IslandPath Analysis: Mycobacterium tuberculosis H37Ra



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 65.43   STD DEV: 3.37
Mycobacterium tuberculosis H37Ra, complete genome - 1..4419977
4034 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
849	 63.83	0	922497..922919	-	140	148660606	-	MRA_0838	-	putative deaminase
850	 63.13	0	923276..924181	+	301	148660607	-	MRA_0839	-	hypothetical protein
851	 60.42	-1	924200..925015	-	271	148660608	-	MRA_0840	-	hypothetical protein
852	 72.22	+2	926257..926670	+	137	148660609	-	MRA_0841	-	PE-PGRS family protein
853	 81.33	+2	926667..928916	+	749	148660610	-	MRA_0841A	-	PE-PGRS family protein
854	 77.05	+2	929143..931791	-	882	148660611	-	MRA_0842	-	PE-PGRS family protein
855	 61.86	-1	932259..932903	+	214	148660612	lpqQ	MRA_0843	-	putative lipoprotein LpqQ
856	 68.20	0	933585..934238	-	217	148660613	-	MRA_0844	-	hypothetical protein
857	 65.21	0	934309..935337	-	342	148660614	-	MRA_0845	-	hypothetical protein
858	 68.09	0	936026..936796	+	256	148660615	lpqR	MRA_0846	-	D-alanyl-D-alanine dipeptidase
859	 65.93	0	936883..937695	+	270	148660616	-	MRA_0847	-	hypothetical protein
860	 60.98	-1	937763..938623	-	286	148660617	pip	MRA_0848	-	proline iminopeptidase
861	 66.67	0	938899..939141	+	80	148660618	-	MRA_0849	-	putative transmembrane protein
862	 67.05	0	939418..940710	+	430	148660619	-	MRA_0850	-	hypothetical protein
863	 64.58	0	940694..941698	+	334	148660620	-	MRA_0851	-	dehydrogenase E1 component
864	 67.74	0	941762..942412	-	216	148660621	narL	MRA_0852	-	putative nitrate/nitrite response transcriptional regulatory protein NarL
865	 62.75	0	942496..943773	+	425	148660622	-	MRA_0853	-	putative two component sensor kinase
866	 64.82	0	943986..945500	-	504	148660623	-	MRA_0854	-	putative copper-binding protein
867	 69.47	+1	945649..946041	+	130	148660624	lpqS	MRA_0855	-	putative lipoprotein LpqS
868	 65.59	0	946244..947362	+	372	148660625	cysK2	MRA_0856	-	putative cysteine synthase A CysK2
869	 63.81	0	947362..948621	+	419	148660626	-	MRA_0857	-	putative integral membrane transport protein
870	 61.56	-1	948618..948950	+	110	148660627	-	MRA_0858	-	putative transposase
871	 66.06	0	948947..949774	-	275	148660628	-	MRA_0859	-	short chain dehydrogenase
872	 61.65	-1	949865..950701	+	278	148660629	fadD16	MRA_0860	-	fatty-acid-CoA ligase FadD16
873	 66.01	0	950742..952424	-	560	148660630	pdc	MRA_0861	-	putative indolepyruvate decarboxylase
874	 59.23	-1	952489..952932	+	147	148660631	-	MRA_0862	-	hypothetical protein
875	 66.76	0	952938..954017	+	359	148660632	far	MRA_0863	-	fatty-acid-CoA racemase Far
876	 61.23	-1	954131..954535	+	134	148660633	-	MRA_0864	-	hypothetical protein
877	 61.60	-1	954563..955036	+	157	148660634	-	MRA_0865	-	hypothetical protein
878	 67.92	0	955033..956226	-	397	148660635	-	MRA_0866	-	aminotransferase
879	 67.08	0	956383..957594	+	403	148660636	fadA	MRA_0867	-	acetyl-CoA acetyltransferase
880	 65.79	0	957599..959761	+	720	148660637	fadB	MRA_0868	-	fatty oxidation complex subunit alpha
881	 64.46	0	959829..961457	-	542	148660638	ercc3	MRA_0869	-	putative ATP-dependent DNA helicase
882	 68.74	0	961648..963918	-	756	148660639	-	MRA_0870	-	hypothetical protein
883	 59.93	-1	963905..964186	+	93	148660640	-	MRA_0870A	-	hypothetical protein
884	 65.08	0	964196..964699	+	167	148660641	moaC	MRA_0871	-	molybdenum cofactor biosynthesis protein C
885	 66.25	0	964696..965178	+	160	148660642	mog	MRA_0872	-	molybdopterin biosynthesis Mog protein
886	 67.14	0	965175..965600	+	141	148660643	moaE2	MRA_0873	-	molybdenum cofactor biosynthesis protein E2
887	 72.96	+2	965618..966841	-	407	148660644	rpfA	MRA_0874	-	putative resuscitation-promoting factor RpfA
888	 65.59	0	967289..967567	-	92	148660645	moaD2	MRA_0875	-	molybdenum cofactor biosynthesis protein D2
889	 69.71	+1	967571..968653	-	360	148660646	moaA	MRA_0876	-	molybdenum cofactor biosynthesis protein A
890	 61.79	-1	968650..969039	-	129	148660647	-	MRA_0877	-	hypothetical protein
891	 67.40	0	969204..969611	+	135	148660648	cspB	MRA_0878	-	cold-shock domain-contain protein
892	 75.07	+2	969730..971550	-	606	148660649	-	MRA_0879	-	PE-PGRS family protein
893	 63.03	0	971811..973763	+	650	148660650	fadE10	MRA_0880	-	acyl-CoA dehydrogenase FadE10
894	 70.46	+1	973852..975012	-	386	148660651	-	MRA_0881	-	hypothetical protein
895	 64.83	0	975112..975600	-	162	148660652	-	MRA_0882	-	hypothetical protein
896	 65.88	0	975597..977243	-	548	148660653	-	MRA_0883	-	hypothetical protein
897	 67.55	0	977381..978169	+	262	148660654	-	MRA_0884	-	hypothetical protein
898	 64.14	0	978164..979510	-	448	148660655	-	MRA_0885	-	PPE family protein
899	 67.75	0	979788..980063	-	91	148660656	-	MRA_0886	-	putative transmembrane protein
900	 66.44	0	980241..980672	+	143	148660657	-	MRA_0887	-	MarR family transcriptional regulator
901	 66.32	0	980669..981535	+	288	148660658	-	MRA_0888	-	putative rRNA methyltransferase
902	 70.18	+1	981532..981816	+	94	148660659	-	MRA_0889	-	putative transmembrane protein
903	 68.64	0	981813..982574	-	253	148660660	-	MRA_0890	-	hypothetical protein
904	 65.78	0	982731..983861	-	376	148660661	serC	MRA_0891	-	phosphoserine aminotransferase
905	 63.44	0	984069..985091	+	340	148660662	-	MRA_0892	-	hypothetical protein
906	 67.77	0	985110..986837	+	575	148660663	fprB	MRA_0893	-	putative ferredoxin/ferredoxin--NADP reductase
907	 64.05	0	986820..987278	-	152	148660664	-	MRA_0894	-	hypothetical protein
908	 59.26	-1	988041..988229	-	62	148660665	-	MRA_0895	-	hypothetical protein
909	 63.20	0	988540..990012	+	490	148660666	-	MRA_0896	-	hypothetical protein
910	 68.63	0	990047..991168	-	373	148660667	citA	MRA_0897	-	citrate synthase 2
911	 64.74	0	991255..993903	-	882	148660668	-	MRA_0898	-	LuxR family transcriptional regulator
912	 60.02	-1	993905..994762	-	285	148660669	-	MRA_0899	-	putative transcriptional regulatory protein
913	 58.74	-1	995160..996647	+	495	148660670	-	MRA_0900	-	putative monooxygenase
914	 60.63	-1	996625..997602	-	325	148660671	-	MRA_0901	-	hypothetical protein
915	 60.74	-1	997831..999012	+	393	148660672	-	MRA_0902	-	MarR family transcriptional regulator
916	 67.26	0	999089..1000606	+	505	148660673	-	MRA_0903	-	hypothetical protein
917	 62.42	0	1000779..1002074	+	431	148660674	gltA	MRA_0904	-	type II citrate synthase
918	 68.28	0	1002115..1003722	-	535	148660675	-	MRA_0905	-	putative oxidoreductase
919	 66.29	0	1003748..1004011	-	87	148660676	-	MRA_0905A	-	hypothetical protein
920	 60.75	-1	1004119..1005099	+	326	148660677	ompA	MRA_0906	-	outer membrane protein A
921	 63.40	0	1005112..1005264	+	50	148660678	-	MRA_0907	-	hypothetical protein
922	 67.42	0	1005264..1005791	+	175	148660679	-	MRA_0908	-	hypothetical protein
923	 68.53	0	1005808..1007148	-	446	148660680	prrB	MRA_0909	-	two component sensor histidine kinase PrrB
924	 66.81	0	1007159..1007869	-	236	148660681	prrA	MRA_0910	-	two component response transcriptional regulatory protein PrrA
925	 69.42	+1	1008000..1009487	-	495	148660682	accD3	MRA_0911	-	acetyl-CoA carboxylase carboxyl transferase subunit beta
926	 64.75	0	1009514..1010245	+	243	148660683	echA6	MRA_0912	-	enoyl-CoA hydratase
927	 68.45	0	1010251..1011369	+	372	148660684	-	MRA_0913	-	hypothetical protein
928	 63.65	0	1011354..1013042	+	562	148660685	-	MRA_0914	-	penicillin-binding protein 4
929	 63.53	0	1013039..1015432	+	797	148660686	ctpE	MRA_0915	-	metal cation transporting P-type ATPase CtpE
930	 56.67	-2	1015989..1016168	+	59	148660687	-	MRA_0916	-	hypothetical protein
931	 62.07	0	1016174..1016608	+	144	148660688	-	MRA_0917	-	hypothetical protein
932	 63.44	0	1016706..1017479	+	257	148660689	-	MRA_0918	-	hypothetical protein
933	 67.56	0	1017544..1017993	+	149	148660690	-	MRA_0919	-	putative transmembrane protein
934	 60.90	-1	1018525..1020033	-	502	148660691	-	MRA_0920	-	putative dioxygenase
935	 67.23	0	1020035..1021273	-	412	148660692	-	MRA_0921	-	acetyl-CoA acetyltransferase
936	 69.50	+1	1021366..1022637	-	423	148660693	-	MRA_0922	-	PPE family protein
937	 66.33	0	1022652..1022951	-	99	148660694	-	MRA_0923	-	PE family protein
938	 61.56	-1	1023395..1025176	+	593	148660695	betP	MRA_0924	-	putative glycine betaine transport integral membrane protein BetP
939	 67.83	0	1025173..1025430	+	85	148660696	-	MRA_0925	-	hypothetical protein
940	 66.46	0	1025519..1025995	+	158	148660697	-	MRA_0926	-	hypothetical protein
941	 63.47	0	1025992..1026492	+	166	148660698	-	MRA_0927	-	hypothetical protein
942	 63.48	0	1026805..1028124	-	439	148660699	-	MRA_0928	-	IS2606-like transposase
943	 67.35	0	1028412..1028993	+	193	148660700	-	MRA_0929	-	IS1535 resolvase
944	 67.27	0	1028993..1030645	+	550	148660701	-	MRA_0930	-	IS1535 transposase
945	 68.92	+1	1030821..1031885	-	354	148660702	-	MRA_0931	-	hypothetical protein
946	 65.35	0	1031886..1033172	-	428	148660703	mntH	MRA_0932	-	manganese transport protein MntH
947	 63.14	0	1033204..1033941	-	245	148660704	-	MRA_0933	-	hypothetical protein
948	 64.53	0	1034018..1035094	-	358	148660705	-	MRA_0934	-	hypothetical protein
65.43	MEAN

3.37	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.