IslandPath Analysis: Mycobacterium tuberculosis H37Ra



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 65.43   STD DEV: 3.37
Mycobacterium tuberculosis H37Ra, complete genome - 1..4419977
4034 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
749	 67.08	0	824989..825945	-	318	148660506	-	MRA_0739	-	hypothetical protein
750	 59.65	-1	826106..827431	+	441	148660507	secY	MRA_0740	-	preprotein translocase subunit SecY
751	 63.74	0	827428..827973	+	181	148660508	adk	MRA_0741	-	adenylate kinase
752	 68.41	0	827976..828776	+	266	148660509	mapA	MRA_0742	-	methionine aminopeptidase
753	 66.48	0	828849..829382	+	177	148660510	sigL	MRA_0743	-	RNA polymerase sigma factor SigL
754	 68.26	0	829446..830198	+	250	148660511	-	MRA_0744	-	hypothetical protein
755	 69.01	+1	830253..830465	+	70	148660512	-	MRA_0745	-	hypothetical protein
756	 66.47	0	830513..831010	+	165	148660513	-	MRA_0746	-	putative transcriptional regulatory protein
757	 71.40	+1	831368..831916	+	182	148660514	-	MRA_0747	-	hypothetical protein
758	 64.06	0	832161..832967	+	268	148660515	-	MRA_0748	-	hypothetical protein
759	 63.45	0	833082..833609	+	175	148660516	-	MRA_0749	-	hypothetical protein
760	 65.08	0	833840..834154	+	104	148660517	-	MRA_0750	-	putative transposase
761	 76.30	+2	834296..834814	+	172	148660518	-	MRA_0751	-	PE-PGRS family protein
762	 62.72	0	835192..835749	-	185	148660519	-	MRA_0752	-	hypothetical protein
763	 64.89	0	835746..836252	-	168	148660520	-	MRA_0753	-	putative transcriptional regulatory protein
764	 79.21	+2	837007..839358	+	783	148660521	-	MRA_0754	-	PE-PGRS family protein
765	 78.97	+2	839757..842162	+	801	148660522	-	MRA_0755	-	PE-PGRS family protein
766	 67.44	0	842253..842510	+	85	148660523	-	MRA_0756	-	hypothetical protein
767	 64.10	0	842534..842962	+	142	148660524	-	MRA_0757	-	hypothetical protein
768	 60.14	-1	843043..843180	-	45	148660525	-	MRA_0758	-	hypothetical protein
769	 63.70	0	843315..843584	+	89	148660526	-	MRA_0759	-	hypothetical protein
770	 68.81	+1	843653..844537	-	294	148660527	mmsB	MRA_0760	-	3-hydroxyisobutyrate dehydrogenase MmsB
771	 66.84	0	844548..845720	-	390	148660528	fadE9	MRA_0761	-	acyl-CoA dehydrogenase FadE9
772	 67.06	0	845727..847259	-	510	148660529	mmsA	MRA_0762	-	MmsA
773	 68.73	0	847474..849219	+	581	148660530	-	MRA_0763	-	PE-PGRS family protein
774	 58.62	-2	849409..851346	-	645	148660531	-	MRA_0764	-	PPE family protein
775	 58.06	-2	851648..851833	-	61	148660532	-	MRA_0765	-	ISMav2-like transposase
776	 69.15	+1	852047..852772	-	241	148660533	-	MRA_0766	-	hypothetical protein
777	 62.50	0	852914..853657	+	247	148660534	phoP	MRA_0767	-	putative two component system response transcriptional positive regulator PhoP
778	 67.22	0	853702..855159	+	485	148660535	phoR	MRA_0768	-	putative two component system response sensor kinase membrane associated PhoR
779	 61.44	-1	855131..855532	-	133	148660536	-	MRA_0769	-	hypothetical protein
780	 61.19	-1	855573..855992	-	139	148660537	-	MRA_0770	-	hypothetical protein
781	 64.10	0	856005..857132	-	375	148660538	adhB	MRA_0771	-	putative zinc-containing alcohol dehydrogenase NAD dependent AdhB
782	 62.64	0	857231..857776	-	181	148660539	-	MRA_0771A	-	hypothetical protein
783	 64.73	0	857779..857985	-	68	148660540	-	MRA_0772	-	putative ferredoxin
784	 63.27	0	857988..859343	-	451	148660541	cyp51	MRA_0773	-	cytochrome p450 51 cyp51
785	 67.15	0	859343..860170	-	275	148660542	-	MRA_0774	-	short chain dehydrogenase
786	 63.69	0	860170..861378	-	402	148660543	cyp123	MRA_0775	-	putative cytochrome p450 123 CYP123
787	 67.76	0	861375..862016	-	213	148660544	-	MRA_0776	-	hypothetical protein
788	 65.51	0	862218..863687	+	489	148660545	aldA	MRA_0777	-	NAD-dependent aldehyde dehydrogenase AldA
789	 61.71	-1	863718..864464	+	248	148660546	-	MRA_0778	-	short chain dehydrogenase
790	 66.19	0	864604..865449	+	281	148660547	-	MRA_0779	-	putative dehydrogenase/reductase
791	 60.69	-1	865446..865880	+	144	148660548	-	MRA_0780	-	putative 4-carboxymuconolactone decarboxylase
792	 67.06	0	865892..867160	+	422	148660549	purD	MRA_0781	-	phosphoribosylamine--glycine ligase
793	 64.91	0	867157..868695	-	512	148660550	ggtA	MRA_0782	-	putative bifunctional acylase GgtA
794	 68.97	+1	868746..869657	-	303	148660551	-	MRA_0783	-	hypothetical protein
795	 68.27	0	869713..870336	+	207	148660552	-	MRA_0784	-	hypothetical protein
796	 68.59	0	870290..871069	-	259	148660553	-	MRA_0785	-	hypothetical protein
797	 65.61	0	871314..872732	+	472	148660554	purB	MRA_0786	-	adenylosuccinate lyase
798	 63.61	0	872737..873981	+	414	148660555	cyp126	MRA_0787	-	putative cytochrome p450 126 CYP126
799	 70.85	+1	873978..874598	-	206	148660556	-	MRA_0788	-	putative transmembrane protein
800	 63.76	0	874649..875542	+	297	148660557	hemH	MRA_0789	-	phosphoribosylaminoimidazole-succinocarboxamide synthase
801	 59.49	-1	875539..876249	+	236	148660558	ptrBa	MRA_0790	-	putative protease II PtrBa
802	 62.75	0	876038..877696	+	552	148660559	ptrBb	MRA_0791	-	putative protease II PtrBb
803	 63.59	0	878124..879746	-	540	148660560	emrB	MRA_0792	-	multidrug resistance integral membrane efflux protein EmrB
804	 68.27	0	879944..880630	+	228	148660561	-	MRA_0793	-	hypothetical protein
805	 64.20	0	880646..882346	+	566	148660562	-	MRA_0794	-	putative FAD-binding dehydrogenase
806	 63.69	0	882381..883019	-	212	148660563	-	MRA_0795	-	hypothetical protein
807	 67.19	0	882765..883724	+	319	148660564	-	MRA_0796	-	hypothetical protein
808	 60.83	-1	883830..884069	+	79	148660565	purS	MRA_0797	-	phosphoribosylformylglycinamidine synthase subunit PurS
809	 65.93	0	884066..884740	+	224	148660566	purQ	MRA_0798	-	phosphoribosylformylglycinamidine synthase subunit I
810	 64.67	0	884757..885356	-	199	148660567	-	MRA_0799	-	hypothetical protein
811	 64.88	0	885378..886106	-	242	148660568	-	MRA_0800	-	hypothetical protein
812	 64.46	0	886103..887146	-	347	148660569	-	MRA_0801	-	hypothetical protein
813	 64.20	0	887143..887952	-	269	148660570	-	MRA_0802	-	GntR family transcriptional regulator
814	 66.34	0	888025..888330	+	101	148660571	-	MRA_0803	-	hypothetical protein
815	 67.40	0	888443..889942	-	499	148660572	-	MRA_0804	-	putative oxidoreductase
816	 65.75	0	890378..890704	+	108	148660573	-	MRA_0805	-	IS6110 hypothetical protein
817	 63.84	0	890755..891639	+	294	148660574	-	MRA_0806	-	IS6110 transposase
818	 66.39	0	891694..892788	+	364	148660575	-	MRA_0807	-	IS1547 transposase
819	 62.78	0	892778..893575	-	265	148660576	cfp29	MRA_0808	-	antigen Cfp29
820	 62.20	0	893572..894579	-	335	148660577	-	MRA_0809	-	hypothetical protein
821	 69.05	+1	894624..895925	+	433	148660578	pepC	MRA_0810	-	putative aminopeptidase 2
822	 64.37	0	895937..896284	+	115	148660579	-	MRA_0811	-	hypothetical protein
823	 63.62	0	896278..896934	-	218	148660580	-	MRA_0812	-	hypothetical protein
824	 67.68	0	897126..899390	+	754	148660581	purL	MRA_0813	-	phosphoribosylformylglycinamidine synthase II
825	 71.59	+1	899387..900016	+	209	148660582	-	MRA_0814	-	hypothetical protein
826	 63.11	0	900137..901093	+	318	148660583	-	MRA_0815	-	hypothetical protein
827	 60.54	-1	901038..902636	-	532	148660584	cpsY	MRA_0816	-	UDP-glucose-4-epimerase
828	 70.26	+1	902941..903330	+	129	148660585	-	MRA_0817	-	hypothetical protein
829	 67.05	0	903417..905000	+	527	148660586	purF	MRA_0818	-	amidophosphoribosyltransferase
830	 65.02	0	905031..906125	+	364	148660587	purM	MRA_0819	-	phosphoribosylaminoimidazole synthetase
831	 63.93	0	906211..906393	-	60	148660588	-	MRA_0820	-	hypothetical protein
832	 68.02	0	906540..907646	-	368	148660589	-	MRA_0821	-	hypothetical protein
833	 66.44	0	907729..908598	+	289	148660590	-	MRA_0822	-	4-amino-4-deoxychorismate lyase
834	 67.55	0	908644..909324	-	226	148660591	-	MRA_0823	-	hypothetical protein
835	 68.65	0	909487..909789	-	100	148660592	sseC1-1	MRA_0824	-	hypothetical protein
836	 61.75	-1	909791..910624	-	277	148660593	cysA2	MRA_0825	-	thiosulfate sulfurtransferase CysA2
837	 67.61	0	910917..911339	-	140	148660594	thiX	MRA_0826	-	putative thioredoxin ThiX
838	 64.58	0	911336..912148	-	270	148660595	-	MRA_0827	-	hypothetical protein
839	 67.58	0	912278..913045	+	255	148660596	-	MRA_0828	-	transcriptional regulator
840	 68.57	0	913042..913989	+	315	148660597	-	MRA_0829	-	hypothetical protein
841	 61.65	-1	914032..914808	+	258	148660598	phoT	MRA_0830	-	phosphate ABC transporter ATP-binding protein PhoT
842	 62.62	0	914864..915505	-	213	148660599	phoY2	MRA_0831	-	putative phosphate transport system regulatory protein
843	 65.30	0	915563..917617	-	684	148660600	-	MRA_0832	-	hypothetical protein
844	 67.18	0	917783..918952	-	389	148660601	-	MRA_0833	-	NifR3/SMM1 family protein
845	 61.65	-1	919040..920056	-	338	148660602	desA1	MRA_0834	-	fatty acid desaturase
846	 64.64	0	920218..920859	-	213	148660603	-	MRA_0835	-	hypothetical protein
847	 66.19	0	920940..921995	+	351	148660604	-	MRA_0836	-	hypothetical protein
848	 64.38	0	922047..922439	-	130	148660605	-	MRA_0837	-	transcription regulator ArsR
65.43	MEAN

3.37	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.