IslandPath Analysis: Mycobacterium tuberculosis H37Ra



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 65.43   STD DEV: 3.37
Mycobacterium tuberculosis H37Ra, complete genome - 1..4419977
4034 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
693	 69.70	+1	776089..776880	+	263	148660450	echA5	MRA_0685	-	enoyl-CoA hydratase
694	 63.49	0	776892..779786	-	964	148660451	mmpL5	MRA_0686	-	transmembrane transport protein MmpL5
695	 61.54	-1	779783..780211	-	142	148660452	-	MRA_0687	-	hypothetical protein
696	 65.26	0	780296..780793	+	165	148660453	-	MRA_0687A	-	hypothetical protein
697	 64.46	0	780849..781346	-	165	148660454	-	MRA_0688	-	putative threonine rich protein
698	 63.20	0	781348..781722	-	124	148660455	-	MRA_0689	-	putative transmembrane protein
699	 65.31	0	782027..782617	+	196	148660456	-	MRA_0690	-	TetR family transcriptional regulator
700	 62.67	0	782866..783240	+	124	148660457	rpsL	MRA_0691	-	30S ribosomal protein S12
701	 63.48	0	783240..783710	+	156	148660458	rpsG	MRA_0692	-	30S ribosomal protein S7
702	 62.35	0	783791..785896	+	701	148660459	fusA1	MRA_0693	-	elongation factor G
703	 64.15	0	786127..787317	+	396	148660460	tuf	MRA_0694	-	elongation factor Tu
704	 61.03	-1	787455..788252	+	265	148660461	-	MRA_0695	-	hypothetical protein
705	 64.13	0	788405..789232	+	275	148660462	fabG	MRA_0696	-	3-ketoacyl-(acyl-carrier-protein) reductase
706	 64.86	0	789246..790466	+	406	148660463	-	MRA_0697	-	ferredoxin reductase
707	 73.33	+2	790463..790717	-	84	148660464	-	MRA_0698	-	hypothetical protein
708	 67.24	0	791330..792379	-	349	148660465	-	MRA_0699	-	hypothetical protein
709	 60.47	-1	792376..792972	-	198	148660466	-	MRA_0700	-	putative transcriptional regulatory protein
710	 63.94	0	793137..793466	+	109	148660467	-	MRA_0700A	-	hypothetical protein
711	 65.99	0	793463..794638	+	391	148660468	pqqE	MRA_0701	-	coenzyme PQQ synthesis protein E
712	 65.32	0	794641..795831	+	396	148660469	lldD1	MRA_0702	-	FMN-dependent alpha-hydroxy acid dehydrogenase family protein
713	 68.78	0	796021..796776	+	251	148660470	-	MRA_0703	-	hypothetical protein
714	 66.38	0	796825..798237	+	470	148660471	-	MRA_0704	-	glycosyl transferase
715	 63.61	0	798239..799678	+	479	148660472	-	MRA_0705	-	putative dehydrogenase
716	 64.38	0	800139..800750	+	203	148660473	-	MRA_0706	-	hypothetical protein
717	 67.12	0	800935..801156	+	73	148660474	-	MRA_0707	-	hypothetical protein
718	 60.78	-1	801793..802098	+	101	148660475	rpsJ	MRA_0708	-	30S ribosomal protein S10
719	 64.07	0	802115..802768	+	217	148660476	rplC	MRA_0709	-	50S ribosomal protein L3
720	 67.41	0	802768..803439	+	223	148660477	rplD	MRA_0710	-	50S ribosomal protein L4
721	 62.05	-1	803439..803741	+	100	148660478	rplW	MRA_0711	-	50S ribosomal protein L23
722	 65.12	0	803834..804676	+	280	148660479	rplB	MRA_0712	-	50S ribosomal protein L2
723	 58.16	-2	804717..804998	+	93	148660480	rpsS	MRA_0713	-	30S ribosomal protein S19
724	 68.52	0	804995..805588	+	197	148660481	rplV	MRA_0714	-	50S ribosomal protein L22
725	 67.39	0	805588..806412	+	274	148660482	rpsC	MRA_0715	-	30S ribosomal protein S3
726	 61.39	-1	806416..806832	+	138	148660483	rplP	MRA_0716	-	50S ribosomal protein L16
727	 61.97	-1	806832..807065	+	77	148660484	rpmC	MRA_0717	-	50S ribosomal protein L29
728	 63.02	0	807062..807472	+	136	148660485	rpsQ	MRA_0718	-	30S ribosomal protein S17
729	 63.03	0	807641..810004	+	787	148660486	atsA	MRA_0719	-	putative arylsulfatase AtsA
730	 67.00	0	810052..810951	+	299	148660487	-	MRA_0720	-	hypothetical protein
731	 61.89	-1	811252..812193	+	313	148660488	-	MRA_0721	-	putative transmembrane protein
732	 63.41	0	812679..813047	+	122	148660489	rplN	MRA_0722	-	50S ribosomal protein L14
733	 60.69	-1	813048..813365	+	105	148660490	rplX	MRA_0723	-	50S ribosomal protein L24
734	 63.12	0	813365..813928	+	187	148660491	rplE	MRA_0724	-	50S ribosomal protein L5
735	 65.05	0	813933..814118	+	61	148660492	rpsN	MRA_0725	-	30S ribosomal protein S14
736	 63.16	0	814282..814680	+	132	148660493	rpsH	MRA_0726	-	30S ribosomal protein S8
737	 61.67	-1	814704..815243	+	179	148660494	rplF	MRA_0727	-	50S ribosomal protein L6
738	 68.29	0	815246..815614	+	122	148660495	rplR	MRA_0728	-	50S ribosomal protein L18
739	 67.72	0	815634..816296	+	220	148660496	rpsE	MRA_0729	-	30S ribosomal protein S5
740	 62.12	0	816299..816496	+	65	148660497	rpmD	MRA_0730	-	50S ribosomal protein L30
741	 67.12	0	816496..816936	+	146	148660498	rplO	MRA_0731	-	50S ribosomal protein L15
742	 66.99	0	816969..818840	+	623	148660499	sppA	MRA_0732	-	hypothetical protein
743	 64.02	0	818845..819750	-	301	148660500	-	MRA_0733	-	hypothetical protein
744	 62.68	0	819843..820946	-	367	148660501	-	MRA_0734	-	hypothetical protein
745	 67.73	0	821149..821805	-	218	148660502	fucA	MRA_0735	-	L-fuculose-phosphate aldolase
746	 69.62	+1	821802..822782	-	326	148660503	serA2	MRA_0736	-	2-hydroxyacid dehydrogenase family protein
747	 70.30	+1	822813..824159	+	448	148660504	xylB	MRA_0737	-	D-xylulose kinase
748	 65.43	0	824172..824900	+	242	148660505	-	MRA_0738	-	hypothetical protein
749	 67.08	0	824989..825945	-	318	148660506	-	MRA_0739	-	hypothetical protein
750	 59.65	-1	826106..827431	+	441	148660507	secY	MRA_0740	-	preprotein translocase subunit SecY
751	 63.74	0	827428..827973	+	181	148660508	adk	MRA_0741	-	adenylate kinase
752	 68.41	0	827976..828776	+	266	148660509	mapA	MRA_0742	-	methionine aminopeptidase
753	 66.48	0	828849..829382	+	177	148660510	sigL	MRA_0743	-	RNA polymerase sigma factor SigL
754	 68.26	0	829446..830198	+	250	148660511	-	MRA_0744	-	hypothetical protein
755	 69.01	+1	830253..830465	+	70	148660512	-	MRA_0745	-	hypothetical protein
756	 66.47	0	830513..831010	+	165	148660513	-	MRA_0746	-	putative transcriptional regulatory protein
757	 71.40	+1	831368..831916	+	182	148660514	-	MRA_0747	-	hypothetical protein
758	 64.06	0	832161..832967	+	268	148660515	-	MRA_0748	-	hypothetical protein
759	 63.45	0	833082..833609	+	175	148660516	-	MRA_0749	-	hypothetical protein
760	 65.08	0	833840..834154	+	104	148660517	-	MRA_0750	-	putative transposase
761	 76.30	+2	834296..834814	+	172	148660518	-	MRA_0751	-	PE-PGRS family protein
762	 62.72	0	835192..835749	-	185	148660519	-	MRA_0752	-	hypothetical protein
763	 64.89	0	835746..836252	-	168	148660520	-	MRA_0753	-	putative transcriptional regulatory protein
764	 79.21	+2	837007..839358	+	783	148660521	-	MRA_0754	-	PE-PGRS family protein
765	 78.97	+2	839757..842162	+	801	148660522	-	MRA_0755	-	PE-PGRS family protein
766	 67.44	0	842253..842510	+	85	148660523	-	MRA_0756	-	hypothetical protein
767	 64.10	0	842534..842962	+	142	148660524	-	MRA_0757	-	hypothetical protein
768	 60.14	-1	843043..843180	-	45	148660525	-	MRA_0758	-	hypothetical protein
769	 63.70	0	843315..843584	+	89	148660526	-	MRA_0759	-	hypothetical protein
770	 68.81	+1	843653..844537	-	294	148660527	mmsB	MRA_0760	-	3-hydroxyisobutyrate dehydrogenase MmsB
771	 66.84	0	844548..845720	-	390	148660528	fadE9	MRA_0761	-	acyl-CoA dehydrogenase FadE9
772	 67.06	0	845727..847259	-	510	148660529	mmsA	MRA_0762	-	MmsA
773	 68.73	0	847474..849219	+	581	148660530	-	MRA_0763	-	PE-PGRS family protein
774	 58.62	-2	849409..851346	-	645	148660531	-	MRA_0764	-	PPE family protein
775	 58.06	-2	851648..851833	-	61	148660532	-	MRA_0765	-	ISMav2-like transposase
776	 69.15	+1	852047..852772	-	241	148660533	-	MRA_0766	-	hypothetical protein
777	 62.50	0	852914..853657	+	247	148660534	phoP	MRA_0767	-	putative two component system response transcriptional positive regulator PhoP
778	 67.22	0	853702..855159	+	485	148660535	phoR	MRA_0768	-	putative two component system response sensor kinase membrane associated PhoR
779	 61.44	-1	855131..855532	-	133	148660536	-	MRA_0769	-	hypothetical protein
780	 61.19	-1	855573..855992	-	139	148660537	-	MRA_0770	-	hypothetical protein
781	 64.10	0	856005..857132	-	375	148660538	adhB	MRA_0771	-	putative zinc-containing alcohol dehydrogenase NAD dependent AdhB
782	 62.64	0	857231..857776	-	181	148660539	-	MRA_0771A	-	hypothetical protein
783	 64.73	0	857779..857985	-	68	148660540	-	MRA_0772	-	putative ferredoxin
784	 63.27	0	857988..859343	-	451	148660541	cyp51	MRA_0773	-	cytochrome p450 51 cyp51
785	 67.15	0	859343..860170	-	275	148660542	-	MRA_0774	-	short chain dehydrogenase
786	 63.69	0	860170..861378	-	402	148660543	cyp123	MRA_0775	-	putative cytochrome p450 123 CYP123
787	 67.76	0	861375..862016	-	213	148660544	-	MRA_0776	-	hypothetical protein
788	 65.51	0	862218..863687	+	489	148660545	aldA	MRA_0777	-	NAD-dependent aldehyde dehydrogenase AldA
789	 61.71	-1	863718..864464	+	248	148660546	-	MRA_0778	-	short chain dehydrogenase
790	 66.19	0	864604..865449	+	281	148660547	-	MRA_0779	-	putative dehydrogenase/reductase
791	 60.69	-1	865446..865880	+	144	148660548	-	MRA_0780	-	putative 4-carboxymuconolactone decarboxylase
792	 67.06	0	865892..867160	+	422	148660549	purD	MRA_0781	-	phosphoribosylamine--glycine ligase
65.43	MEAN

3.37	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.