IslandPathversion 1.0

IslandPath Analysis: Mycobacterium tuberculosis H37Ra



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 65.43 STD DEV: 3.37
Mycobacterium tuberculosis H37Ra, complete genome - 1..4419977
4034 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
629	 66.67	0	710666..711658	+	330	148660386	-	MRA_0623	-	hypothetical protein
630	 68.31	0	711655..711897	+	80	148660387	-	MRA_0624	-	putative integral membrane protein
631	 65.17	0	711894..712160	-	88	148660388	-	MRA_0625	-	hypothetical protein
632	 64.93	0	712316..712717	+	133	148660389	-	MRA_0626	-	hypothetical protein
633	 70.26	+1	712846..713541	+	231	148660390	galTa	MRA_0627	-	putative galactose-1-phosphate uridylyltransferase GalTa
634	 64.23	0	713538..714029	+	163	148660391	galTb	MRA_0628	-	putative galactose-1-phosphate uridylyltransferase GalTb
635	 72.53	+2	714026..715117	+	363	148660392	galK	MRA_0629	-	galactokinase
636	 69.67	+1	715512..716576	+	354	148660393	-	MRA_0630	-	hypothetical protein
637	 63.92	0	716680..717627	+	315	148660394	-	MRA_0631	-	hypothetical protein
638	 69.02	+1	717720..717974	+	84	148660395	-	MRA_0632	-	hypothetical protein
639	 64.39	0	717974..718369	+	131	148660396	-	MRA_0633	-	hypothetical protein
640	 69.64	+1	718463..719203	-	246	148660397	-	MRA_0634	-	putative transmembrane protein
641	 70.11	+1	719335..719595	+	86	148660398	-	MRA_0635	-	hypothetical protein
642	 68.87	+1	719592..719999	+	135	148660399	-	MRA_0636	-	hypothetical protein
643	 72.22	+2	720071..721222	-	383	148660400	-	MRA_0637	-	hypothetical protein
644	 69.97	+1	721315..723042	-	575	148660401	recD	MRA_0638	-	putative exonuclease V alpha chain
645	 70.17	+1	723039..726323	-	1094	148660402	recB	MRA_0639	-	exodeoxyribonuclease V subunit beta
646	 71.55	+1	726323..729616	-	1097	148660403	recC	MRA_0640	-	exodeoxyribonuclease V subunit gamma
647	 63.65	0	729893..730588	-	231	148660404	echA3	MRA_0641	-	enoyl-CoA hydratase
648	 66.07	0	730637..731476	-	279	148660405	-	MRA_0642	-	hypothetical protein
649	 61.62	-1	731630..732343	-	237	148660406	-	MRA_0643	-	putative glyoxalase II
650	 61.11	-1	732423..732674	+	83	148660407	-	MRA_0644	-	hypothetical protein
651	 58.93	-1	733022..733189	+	55	148660408	rpmG	MRA_0645	-	50S ribosomal protein L33
652	 59.26	-1	733240..733698	+	152	148660409	-	MRA_0646	-	(3R)-hydroxyacyl-ACP dehydratase subunit HadA
653	 62.47	0	733698..734126	+	142	148660410	-	MRA_0647	-	(3R)-hydroxyacyl-ACP dehydratase subunit HadB
654	 60.71	-1	734212..734631	+	139	148660411	-	MRA_0648	-	(3R)-hydroxyacyl-ACP dehydratase subunit HadC
655	 64.61	0	735043..735528	+	161	148660412	secE	MRA_0649	-	preprotein translocase subunit SecE
656	 63.88	0	735560..736276	+	238	148660413	nusG	MRA_0650	-	transcription antitermination protein NusG
657	 63.17	0	736328..736756	+	142	148660414	rplK	MRA_0651	-	50S ribosomal protein L11
658	 64.69	0	736823..737530	+	235	148660415	rplA	MRA_0652	-	50S ribosomal protein L1
659	 60.15	-1	737604..738509	-	301	148660416	mmaA4	MRA_0653	-	methoxy mycolic acid synthase 4
660	 59.18	-1	738574..739455	-	293	148660417	mmaA3	MRA_0654	-	methoxy mycolic acid synthase 3
661	 62.73	0	739603..740466	-	287	148660418	mmaA2	MRA_0655	-	methoxy mycolic acid synthase 2
662	 59.93	-1	740633..741493	-	286	148660419	mmaA1	MRA_0656	-	methoxy mycolic acid synthase 1
663	 67.88	0	741540..742445	-	301	148660420	lipG	MRA_0657	-	hypothetical protein
664	 65.85	0	742457..743923	-	488	148660421	-	MRA_0658	-	hypothetical protein
665	 71.98	+1	744025..747672	+	1215	148660422	-	MRA_0659	-	alpha-mannosidase
666	 77.04	+2	747669..748343	+	224	148660423	fabD2	MRA_0660	-	putative malonyl CoA acyl carrier protein transacylase FabD2
667	 75.14	+2	748343..749251	+	302	148660424	-	MRA_0661	-	putative glucokinase
668	 67.04	0	749582..750118	+	178	148660425	rplJ	MRA_0662	-	50S ribosomal protein L10
669	 67.43	0	750155..750547	+	130	148660426	rplL	MRA_0663	-	50S ribosomal protein L7/L12
670	 67.10	0	750540..751235	-	231	148660427	-	MRA_0664	-	putative transcriptional repressor
671	 66.80	0	751306..752811	+	501	148660428	-	MRA_0665	-	putative dioxygenase
672	 63.06	0	752823..753902	+	359	148660429	mkl	MRA_0666	-	ribonucleotide ABC transporter ATP-binding protein Mkl
673	 65.62	0	754290..754673	-	127	148660430	-	MRA_0667	-	hypothetical protein
674	 64.74	0	754768..754923	-	51	148660431	-	MRA_0667A	-	hypothetical protein
675	 65.41	0	754999..755715	-	238	148660432	-	MRA_0668	-	putative integral membrane protein
676	 63.43	0	755991..756299	-	102	148660433	-	MRA_0669	-	hypothetical protein
677	 71.54	+1	756286..756531	-	81	148660434	-	MRA_0670	-	hypothetical protein
678	 68.26	0	756641..757078	-	145	148660435	-	MRA_0671	-	hypothetical protein
679	 68.29	0	757075..757443	-	122	148660436	-	MRA_0672	-	hypothetical protein
680	 64.26	0	757443..759806	+	787	148660437	atsD	MRA_0673	-	putative arylsulfatase
681	 65.57	0	759838..760110	+	90	148660438	-	MRA_0673A	-	hypothetical protein
682	 64.90	0	760107..760445	+	112	148660439	-	MRA_0674	-	hypothetical protein
683	 63.22	0	760442..760615	+	57	148660440	-	MRA_0675	-	hypothetical protein
684	 64.34	0	761113..764631	+	1172	148660441	rpoB	MRA_0676	-	DNA-directed RNA polymerase subunit beta
685	 65.17	0	764676..768626	+	1316	148660442	rpoC	MRA_0677	-	DNA-directed RNA polymerase subunit beta'
686	 65.08	0	768623..769126	-	167	148660443	-	MRA_0678	-	hypothetical protein
687	 65.20	0	768990..770903	-	637	148660444	-	MRA_0679	-	putative hydrolase
688	 66.14	0	771098..771856	+	252	148660445	end	MRA_0680	-	endonuclease IV
689	 66.07	0	771888..772730	+	280	148660446	lpqP	MRA_0681	-	putative lipoprotein LpqP
690	 66.91	0	772790..774418	+	542	148660447	fadE8	MRA_0682	-	acyl-CoA dehydrogenase FadE8
691	 67.31	0	774429..775367	+	312	148660448	echA4	MRA_0683	-	enoyl-CoA hydratase
692	 66.80	0	775370..776092	+	240	148660449	-	MRA_0684	-	hypothetical protein
693	 69.70	+1	776089..776880	+	263	148660450	echA5	MRA_0685	-	enoyl-CoA hydratase
694	 63.49	0	776892..779786	-	964	148660451	mmpL5	MRA_0686	-	transmembrane transport protein MmpL5
695	 61.54	-1	779783..780211	-	142	148660452	-	MRA_0687	-	hypothetical protein
696	 65.26	0	780296..780793	+	165	148660453	-	MRA_0687A	-	hypothetical protein
697	 64.46	0	780849..781346	-	165	148660454	-	MRA_0688	-	putative threonine rich protein
698	 63.20	0	781348..781722	-	124	148660455	-	MRA_0689	-	putative transmembrane protein
699	 65.31	0	782027..782617	+	196	148660456	-	MRA_0690	-	TetR family transcriptional regulator
700	 62.67	0	782866..783240	+	124	148660457	rpsL	MRA_0691	-	30S ribosomal protein S12
701	 63.48	0	783240..783710	+	156	148660458	rpsG	MRA_0692	-	30S ribosomal protein S7
702	 62.35	0	783791..785896	+	701	148660459	fusA1	MRA_0693	-	elongation factor G
703	 64.15	0	786127..787317	+	396	148660460	tuf	MRA_0694	-	elongation factor Tu
704	 61.03	-1	787455..788252	+	265	148660461	-	MRA_0695	-	hypothetical protein
705	 64.13	0	788405..789232	+	275	148660462	fabG	MRA_0696	-	3-ketoacyl-(acyl-carrier-protein) reductase
706	 64.86	0	789246..790466	+	406	148660463	-	MRA_0697	-	ferredoxin reductase
707	 73.33	+2	790463..790717	-	84	148660464	-	MRA_0698	-	hypothetical protein
708	 67.24	0	791330..792379	-	349	148660465	-	MRA_0699	-	hypothetical protein
709	 60.47	-1	792376..792972	-	198	148660466	-	MRA_0700	-	putative transcriptional regulatory protein
710	 63.94	0	793137..793466	+	109	148660467	-	MRA_0700A	-	hypothetical protein
711	 65.99	0	793463..794638	+	391	148660468	pqqE	MRA_0701	-	coenzyme PQQ synthesis protein E
712	 65.32	0	794641..795831	+	396	148660469	lldD1	MRA_0702	-	FMN-dependent alpha-hydroxy acid dehydrogenase family protein
713	 68.78	0	796021..796776	+	251	148660470	-	MRA_0703	-	hypothetical protein
714	 66.38	0	796825..798237	+	470	148660471	-	MRA_0704	-	glycosyl transferase
715	 63.61	0	798239..799678	+	479	148660472	-	MRA_0705	-	putative dehydrogenase
716	 64.38	0	800139..800750	+	203	148660473	-	MRA_0706	-	hypothetical protein
717	 67.12	0	800935..801156	+	73	148660474	-	MRA_0707	-	hypothetical protein
718	 60.78	-1	801793..802098	+	101	148660475	rpsJ	MRA_0708	-	30S ribosomal protein S10
719	 64.07	0	802115..802768	+	217	148660476	rplC	MRA_0709	-	50S ribosomal protein L3
720	 67.41	0	802768..803439	+	223	148660477	rplD	MRA_0710	-	50S ribosomal protein L4
721	 62.05	-1	803439..803741	+	100	148660478	rplW	MRA_0711	-	50S ribosomal protein L23
722	 65.12	0	803834..804676	+	280	148660479	rplB	MRA_0712	-	50S ribosomal protein L2
723	 58.16	-2	804717..804998	+	93	148660480	rpsS	MRA_0713	-	30S ribosomal protein S19
724	 68.52	0	804995..805588	+	197	148660481	rplV	MRA_0714	-	50S ribosomal protein L22
725	 67.39	0	805588..806412	+	274	148660482	rpsC	MRA_0715	-	30S ribosomal protein S3
726	 61.39	-1	806416..806832	+	138	148660483	rplP	MRA_0716	-	50S ribosomal protein L16
727	 61.97	-1	806832..807065	+	77	148660484	rpmC	MRA_0717	-	50S ribosomal protein L29
728	 63.02	0	807062..807472	+	136	148660485	rpsQ	MRA_0718	-	30S ribosomal protein S17
65.43	MEAN

3.37	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.