IslandPathversion 1.0

IslandPath Analysis: Mycobacterium tuberculosis H37Ra



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 65.43 STD DEV: 3.37
Mycobacterium tuberculosis H37Ra, complete genome - 1..4419977
4034 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
604	 65.21	0	690369..691814	+	481	148660361	mce2C	MRA_0599	-	MCE-family protein Mce2C
605	 62.93	0	691811..693337	+	508	148660362	mce2D	MRA_0600	-	MCE-family protein Mce2D
606	 63.52	0	693334..694542	+	402	148660363	lprL	MRA_0601	-	MCE family lipoprotein LprL
607	 63.96	0	694547..696097	+	516	148660364	mce2F	MRA_0602	-	MCE-family protein Mce2F
608	 64.12	0	696149..696541	-	130	148660365	-	MRA_0603	-	hypothetical protein
609	 64.34	0	696538..696795	-	85	148660366	-	MRA_0604	-	hypothetical protein
610	 67.15	0	696978..698213	-	411	148660367	-	MRA_0605	-	hypothetical protein
611	 65.94	0	698464..698877	-	137	148660368	-	MRA_0606	-	hypothetical protein
612	 61.60	-1	698874..699110	-	78	148660369	-	MRA_0607	-	hypothetical protein
613	 68.84	+1	699214..699720	-	168	148660370	-	MRA_0608	-	two component sensor kinase
614	 69.64	+1	699834..700304	-	156	148660371	-	MRA_0608A	-	putative two component sensor kinase
615	 69.16	+1	700348..701109	-	253	148660372	tcrA	MRA_0609	-	putative two component DNA binding transcriptional regulatory protein TcrA
616	 74.68	+2	701166..701477	+	103	148660373	-	MRA_0610	-	hypothetical protein
617	 69.61	+1	701549..702499	+	316	148660374	lpqO	MRA_0611	-	putative lipoprotein LpqO
618	 63.88	0	702716..703324	+	202	148660375	-	MRA_0612	-	IS1536 resolvase
619	 66.53	0	703326..704069	+	247	148660376	-	MRA_0613	-	truncated IS1536 transposase
620	 65.37	0	704123..704509	+	128	148660377	-	MRA_0614	-	hypothetical protein
621	 63.82	0	704554..704799	+	81	148660378	-	MRA_0615	-	hypothetical protein
622	 64.93	0	704796..705197	+	133	148660379	-	MRA_0616	-	hypothetical protein
623	 65.35	0	705140..705367	+	75	148660380	-	MRA_0617	-	hypothetical protein
624	 64.76	0	705650..706069	+	139	148660381	-	MRA_0618	-	hypothetical protein
625	 69.08	+1	706062..707219	-	385	148660382	-	MRA_0619	-	hypothetical protein
626	 63.80	0	707271..707654	-	127	148660383	-	MRA_0620	-	hypothetical protein
627	 71.12	+1	707634..708239	+	201	148660384	-	MRA_0621	-	hypothetical protein
628	 71.30	+1	708258..710825	-	855	148660385	-	MRA_0622	-	hypothetical protein
629	 66.67	0	710666..711658	+	330	148660386	-	MRA_0623	-	hypothetical protein
630	 68.31	0	711655..711897	+	80	148660387	-	MRA_0624	-	putative integral membrane protein
631	 65.17	0	711894..712160	-	88	148660388	-	MRA_0625	-	hypothetical protein
632	 64.93	0	712316..712717	+	133	148660389	-	MRA_0626	-	hypothetical protein
633	 70.26	+1	712846..713541	+	231	148660390	galTa	MRA_0627	-	putative galactose-1-phosphate uridylyltransferase GalTa
634	 64.23	0	713538..714029	+	163	148660391	galTb	MRA_0628	-	putative galactose-1-phosphate uridylyltransferase GalTb
635	 72.53	+2	714026..715117	+	363	148660392	galK	MRA_0629	-	galactokinase
636	 69.67	+1	715512..716576	+	354	148660393	-	MRA_0630	-	hypothetical protein
637	 63.92	0	716680..717627	+	315	148660394	-	MRA_0631	-	hypothetical protein
638	 69.02	+1	717720..717974	+	84	148660395	-	MRA_0632	-	hypothetical protein
639	 64.39	0	717974..718369	+	131	148660396	-	MRA_0633	-	hypothetical protein
640	 69.64	+1	718463..719203	-	246	148660397	-	MRA_0634	-	putative transmembrane protein
641	 70.11	+1	719335..719595	+	86	148660398	-	MRA_0635	-	hypothetical protein
642	 68.87	+1	719592..719999	+	135	148660399	-	MRA_0636	-	hypothetical protein
643	 72.22	+2	720071..721222	-	383	148660400	-	MRA_0637	-	hypothetical protein
644	 69.97	+1	721315..723042	-	575	148660401	recD	MRA_0638	-	putative exonuclease V alpha chain
645	 70.17	+1	723039..726323	-	1094	148660402	recB	MRA_0639	-	exodeoxyribonuclease V subunit beta
646	 71.55	+1	726323..729616	-	1097	148660403	recC	MRA_0640	-	exodeoxyribonuclease V subunit gamma
647	 63.65	0	729893..730588	-	231	148660404	echA3	MRA_0641	-	enoyl-CoA hydratase
648	 66.07	0	730637..731476	-	279	148660405	-	MRA_0642	-	hypothetical protein
649	 61.62	-1	731630..732343	-	237	148660406	-	MRA_0643	-	putative glyoxalase II
650	 61.11	-1	732423..732674	+	83	148660407	-	MRA_0644	-	hypothetical protein
651	 58.93	-1	733022..733189	+	55	148660408	rpmG	MRA_0645	-	50S ribosomal protein L33
652	 59.26	-1	733240..733698	+	152	148660409	-	MRA_0646	-	(3R)-hydroxyacyl-ACP dehydratase subunit HadA
653	 62.47	0	733698..734126	+	142	148660410	-	MRA_0647	-	(3R)-hydroxyacyl-ACP dehydratase subunit HadB
654	 60.71	-1	734212..734631	+	139	148660411	-	MRA_0648	-	(3R)-hydroxyacyl-ACP dehydratase subunit HadC
655	 64.61	0	735043..735528	+	161	148660412	secE	MRA_0649	-	preprotein translocase subunit SecE
656	 63.88	0	735560..736276	+	238	148660413	nusG	MRA_0650	-	transcription antitermination protein NusG
657	 63.17	0	736328..736756	+	142	148660414	rplK	MRA_0651	-	50S ribosomal protein L11
658	 64.69	0	736823..737530	+	235	148660415	rplA	MRA_0652	-	50S ribosomal protein L1
659	 60.15	-1	737604..738509	-	301	148660416	mmaA4	MRA_0653	-	methoxy mycolic acid synthase 4
660	 59.18	-1	738574..739455	-	293	148660417	mmaA3	MRA_0654	-	methoxy mycolic acid synthase 3
661	 62.73	0	739603..740466	-	287	148660418	mmaA2	MRA_0655	-	methoxy mycolic acid synthase 2
662	 59.93	-1	740633..741493	-	286	148660419	mmaA1	MRA_0656	-	methoxy mycolic acid synthase 1
663	 67.88	0	741540..742445	-	301	148660420	lipG	MRA_0657	-	hypothetical protein
664	 65.85	0	742457..743923	-	488	148660421	-	MRA_0658	-	hypothetical protein
665	 71.98	+1	744025..747672	+	1215	148660422	-	MRA_0659	-	alpha-mannosidase
666	 77.04	+2	747669..748343	+	224	148660423	fabD2	MRA_0660	-	putative malonyl CoA acyl carrier protein transacylase FabD2
667	 75.14	+2	748343..749251	+	302	148660424	-	MRA_0661	-	putative glucokinase
668	 67.04	0	749582..750118	+	178	148660425	rplJ	MRA_0662	-	50S ribosomal protein L10
669	 67.43	0	750155..750547	+	130	148660426	rplL	MRA_0663	-	50S ribosomal protein L7/L12
670	 67.10	0	750540..751235	-	231	148660427	-	MRA_0664	-	putative transcriptional repressor
671	 66.80	0	751306..752811	+	501	148660428	-	MRA_0665	-	putative dioxygenase
672	 63.06	0	752823..753902	+	359	148660429	mkl	MRA_0666	-	ribonucleotide ABC transporter ATP-binding protein Mkl
673	 65.62	0	754290..754673	-	127	148660430	-	MRA_0667	-	hypothetical protein
674	 64.74	0	754768..754923	-	51	148660431	-	MRA_0667A	-	hypothetical protein
675	 65.41	0	754999..755715	-	238	148660432	-	MRA_0668	-	putative integral membrane protein
676	 63.43	0	755991..756299	-	102	148660433	-	MRA_0669	-	hypothetical protein
677	 71.54	+1	756286..756531	-	81	148660434	-	MRA_0670	-	hypothetical protein
678	 68.26	0	756641..757078	-	145	148660435	-	MRA_0671	-	hypothetical protein
679	 68.29	0	757075..757443	-	122	148660436	-	MRA_0672	-	hypothetical protein
680	 64.26	0	757443..759806	+	787	148660437	atsD	MRA_0673	-	putative arylsulfatase
681	 65.57	0	759838..760110	+	90	148660438	-	MRA_0673A	-	hypothetical protein
682	 64.90	0	760107..760445	+	112	148660439	-	MRA_0674	-	hypothetical protein
683	 63.22	0	760442..760615	+	57	148660440	-	MRA_0675	-	hypothetical protein
684	 64.34	0	761113..764631	+	1172	148660441	rpoB	MRA_0676	-	DNA-directed RNA polymerase subunit beta
685	 65.17	0	764676..768626	+	1316	148660442	rpoC	MRA_0677	-	DNA-directed RNA polymerase subunit beta'
686	 65.08	0	768623..769126	-	167	148660443	-	MRA_0678	-	hypothetical protein
687	 65.20	0	768990..770903	-	637	148660444	-	MRA_0679	-	putative hydrolase
688	 66.14	0	771098..771856	+	252	148660445	end	MRA_0680	-	endonuclease IV
689	 66.07	0	771888..772730	+	280	148660446	lpqP	MRA_0681	-	putative lipoprotein LpqP
690	 66.91	0	772790..774418	+	542	148660447	fadE8	MRA_0682	-	acyl-CoA dehydrogenase FadE8
691	 67.31	0	774429..775367	+	312	148660448	echA4	MRA_0683	-	enoyl-CoA hydratase
692	 66.80	0	775370..776092	+	240	148660449	-	MRA_0684	-	hypothetical protein
693	 69.70	+1	776089..776880	+	263	148660450	echA5	MRA_0685	-	enoyl-CoA hydratase
694	 63.49	0	776892..779786	-	964	148660451	mmpL5	MRA_0686	-	transmembrane transport protein MmpL5
695	 61.54	-1	779783..780211	-	142	148660452	-	MRA_0687	-	hypothetical protein
696	 65.26	0	780296..780793	+	165	148660453	-	MRA_0687A	-	hypothetical protein
697	 64.46	0	780849..781346	-	165	148660454	-	MRA_0688	-	putative threonine rich protein
698	 63.20	0	781348..781722	-	124	148660455	-	MRA_0689	-	putative transmembrane protein
699	 65.31	0	782027..782617	+	196	148660456	-	MRA_0690	-	TetR family transcriptional regulator
700	 62.67	0	782866..783240	+	124	148660457	rpsL	MRA_0691	-	30S ribosomal protein S12
701	 63.48	0	783240..783710	+	156	148660458	rpsG	MRA_0692	-	30S ribosomal protein S7
702	 62.35	0	783791..785896	+	701	148660459	fusA1	MRA_0693	-	elongation factor G
703	 64.15	0	786127..787317	+	396	148660460	tuf	MRA_0694	-	elongation factor Tu
65.43	MEAN

3.37	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.