IslandPath Analysis: Mycobacterium tuberculosis H37Ra



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 65.43   STD DEV: 3.37
Mycobacterium tuberculosis H37Ra, complete genome - 1..4419977
4034 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
16	 63.26	0	16948..18828	-	626	148659773	pknB	MRA_0016	-	serine/threonine protein kinase
17	 67.67	0	18825..20120	-	431	148659774	pknA	MRA_0017	-	serine/threonine protein kinase
18	 64.50	0	20117..21592	-	491	148659775	pbpA	MRA_0018	-	putative penicillin-binding protein PbpA
19	 62.13	0	21589..22998	-	469	148659776	rodA	MRA_0019	-	cell division protein FtsA
20	 67.57	0	22995..24539	-	514	148659777	ppp	MRA_0020	-	putative serine/threonine phosphatase Ppp
21	 63.03	0	24628..25095	-	155	148659778	-	MRA_0021	-	hypothetical protein
22	 66.35	0	25219..26802	-	527	148659779	-	MRA_0022	-	hypothetical protein
23	 66.05	0	27271..28239	-	322	148659780	-	MRA_0023	-	2-nitropropane dioxygenase
24	 67.96	0	28351..28659	+	102	148659781	-	MRA_0024	-	hypothetical protein
25	 68.33	0	28381..28800	-	139	148659782	whiB5	MRA_0025	-	putative transcriptional regulatory protein whib-like WhiB5
26	 67.32	0	28953..29723	+	256	148659783	-	MRA_0026	-	putative transcriptional regulatory protein
27	 69.03	+1	29720..30565	+	281	148659784	-	MRA_0027	-	NLP/P60 family protein
28	 65.29	0	30603..30965	+	120	148659785	-	MRA_0028	-	hypothetical protein
29	 65.11	0	31080..32426	+	448	148659786	-	MRA_0029	-	hypothetical protein
30	 62.89	0	32547..32864	+	105	148659787	-	MRA_0030	-	hypothetical protein
31	 63.73	0	32872..33177	+	101	148659788	-	MRA_0031	-	hypothetical protein
32	 66.12	0	33415..34512	+	365	148659789	-	MRA_0032	-	hypothetical protein
33	 65.45	0	34582..34911	+	109	148659790	-	MRA_0033	-	hypothetical protein
34	 66.67	0	34940..35152	+	70	148659791	-	MRA_0034	-	putative remnant of a transposase
35	 62.05	-1	35653..37968	+	771	148659792	bioF2	MRA_0035	-	8-amino-7-oxononanoate synthase
36	 56.82	-2	37965..38228	+	87	148659793	acpA	MRA_0036	-	acyl carrier protein AcpA
37	 65.66	0	38225..38620	+	131	148659794	-	MRA_0037	-	hypothetical protein
38	 63.59	0	38617..40305	+	562	148659795	fadD34	MRA_0038	-	fatty-acid-CoA ligase FadD34
39	 68.73	0	40414..41187	-	257	148659796	-	MRA_0039	-	hypothetical protein
40	 67.65	0	41235..42560	-	441	148659797	-	MRA_0040	-	putative integral membrane protein
41	 65.35	0	42662..43270	+	202	148659798	-	MRA_0041	-	hypothetical protein
42	 71.84	+1	43362..43709	-	115	148659799	-	MRA_0042	-	putative transmembrane protein
43	 67.52	0	43791..44723	-	310	148659800	mtc28	MRA_0043	-	proline rich secreted protein Mtc28
44	 62.96	0	44920..47829	+	969	148659801	leuS	MRA_0044	-	leucyl-tRNA synthetase
45	 63.80	0	47939..48565	-	208	148659802	-	MRA_0045	-	MarR family transcriptional regulator
46	 63.67	0	48724..49458	-	244	148659803	-	MRA_0046	-	GntR family transcriptional regulator
47	 66.54	0	49591..50385	-	264	148659804	-	MRA_0047	-	putative oxidoreductase
48	 67.11	0	50401..51297	-	298	148659805	-	MRA_0048	-	putative hydrolase
49	 63.95	0	51379..52482	-	367	148659806	ino1	MRA_0049	-	1L-myo-inositol-1-phosphate synthase
50	 66.48	0	52543..53085	-	180	148659807	-	MRA_0050	-	hypothetical protein
51	 65.86	0	53186..54055	-	289	148659808	-	MRA_0051	-	hypothetical protein
52	 66.67	0	54189..54602	+	137	148659809	-	MRA_0052	-	hypothetical protein
53	 63.28	0	55021..57057	+	678	148659810	ponA1	MRA_0053	-	bifunctional penicillin-binding protein 1A/1B PonA1
54	 64.53	0	57054..58736	+	560	148659811	-	MRA_0054	-	putative transmembrane protein
55	 65.96	0	58768..59331	+	187	148659812	-	MRA_0055	-	hypothetical protein
56	 60.14	-1	59550..59840	+	96	148659813	rpsF	MRA_0056	-	30S ribosomal protein S6
57	 66.67	0	59944..60438	+	164	148659814	ssb	MRA_0057	-	single-strand DNA-binding protein
58	 64.71	0	60480..60734	+	84	148659815	rpsR	MRA_0058	-	30S ribosomal protein S18
59	 62.09	0	60767..61225	+	152	148659816	rplI	MRA_0059	-	50S ribosomal protein L9
60	 60.73	-1	61254..61775	+	173	148659817	-	MRA_0059A	-	hypothetical protein
61	 62.82	0	61754..64378	+	874	148659818	dnaB	MRA_0060	-	replicative DNA helicase
62	 61.90	-1	64558..65250	+	230	148659819	-	MRA_0061	-	hypothetical protein
63	 60.06	-1	65267..66325	+	352	148659820	-	MRA_0062	-	hypothetical protein
64	 61.74	-1	66349..66774	+	141	148659821	-	MRA_0063	-	hypothetical protein
65	 68.24	0	66910..68052	+	380	148659822	celA1	MRA_0064	-	cellulase
66	 67.22	0	68281..69720	+	479	148659823	-	MRA_0065	-	putative oxidoreductase
67	 63.64	0	69978..72917	+	979	148659824	-	MRA_0066	-	hypothetical protein
68	 62.44	0	73179..73580	+	133	148659825	-	MRA_0067	-	hypothetical protein
69	 61.80	-1	73632..75869	-	745	148659826	icd2	MRA_0068	-	isocitrate dehydrogenase (NADP) Icd2
70	 65.09	0	75987..76556	-	189	148659827	-	MRA_0069	-	TetR family transcriptional regulator
71	 65.79	0	76659..77570	+	303	148659828	-	MRA_0070	-	short chain dehydrogenase
72	 65.08	0	77595..78980	-	461	148659829	sdaA	MRA_0071	-	L-serine dehydratase
73	 66.12	0	78977..80254	-	425	148659830	glyA2	MRA_0072	-	serine hydroxymethyltransferase
74	 64.69	0	80844..81551	+	235	148659831	-	MRA_0073	-	putative maturase
75	 61.71	-1	81982..83031	+	349	148659832	-	MRA_0074	-	putative glutamine-transport transmembrane protein ABC transporter
76	 62.64	0	83034..84026	+	330	148659833	glnQ1	MRA_0075	-	glutamine-transport ATP-binding protein ABC transporter GlnQ
77	 66.02	0	84106..85341	+	411	148659834	-	MRA_0076	-	hypothetical protein
78	 64.11	0	85354..86526	+	390	148659835	-	MRA_0077	-	putative aminotransferase
79	 62.31	0	86541..86930	-	129	148659836	-	MRA_0078	-	hypothetical protein
80	 66.19	0	86994..87824	-	276	148659837	-	MRA_0079	-	putative oxidoreductase
81	 67.99	0	87886..88491	+	201	148659838	-	MRA_0080	-	putative transcriptional regulatory protein
82	 61.11	-1	88566..89159	-	197	148659839	-	MRA_0081	-	hypothetical protein
83	 62.32	0	89156..89362	-	68	148659840	-	MRA_0082	-	hypothetical protein
84	 68.13	0	89562..90383	+	273	148659841	-	MRA_0083	-	hypothetical protein
85	 68.85	+1	90380..90838	+	152	148659842	-	MRA_0084	-	hypothetical protein
86	 65.51	0	90933..91277	+	114	148659843	-	MRA_0085	-	putative transcriptional regulatory protein
87	 69.79	+1	91282..91761	+	159	148659844	-	MRA_0086	-	putative oxidoreductase
88	 71.19	+1	91758..93680	+	640	148659845	-	MRA_0087	-	putative NADH-ubiquinone oxidoreductase
89	 68.56	0	93686..94636	+	316	148659846	hycD	MRA_0088	-	formate hydrogenlyase HycD
90	 68.93	+1	94647..95309	+	220	148659847	hycP	MRA_0089	-	putative hydrogenase HycP
91	 68.92	+1	95309..96775	+	488	148659848	hycQ	MRA_0090	-	putative hydrogenase HycQ
92	 66.80	0	96772..98250	+	492	148659849	hycE	MRA_0091	-	putative formate hydrogenase HycE
93	 61.78	-1	98285..98959	+	224	148659850	-	MRA_0092	-	hypothetical protein
94	 67.00	0	99116..99709	+	197	148659851	-	MRA_0093	-	putative methyltransferase
95	 65.63	0	99838..100608	+	256	148659852	-	MRA_0094	-	hypothetical protein
96	 65.10	0	101042..101809	+	255	148659853	mtn	MRA_0095	-	putative 5-methylthioadenosine nucleosidase/S-adenosylhomocysteine nucleosidase
97	 67.54	0	101941..104226	+	761	148659854	ctpA	MRA_0096	-	cation transporter p-type ATPase A
98	 67.61	0	104173..105021	-	282	148659855	-	MRA_0097	-	hypothetical protein
99	 67.51	0	105068..106021	-	317	148659856	-	MRA_0098	-	hypothetical protein
100	 61.56	-1	106163..106573	-	136	148659857	-	MRA_0099	-	hypothetical protein
101	 65.09	0	106682..108073	+	463	148659858	-	MRA_0100	-	PPE family protein
102	 58.85	-1	108092..108961	+	289	148659859	-	MRA_0101	-	putative dioxygenase
103	 59.06	-1	108958..109509	+	183	148659860	-	MRA_0102	-	hypothetical protein
104	 62.66	0	109514..111136	+	540	148659861	fadD10	MRA_0103	-	acyl-CoA synthetase
105	 60.34	-1	111141..111377	+	78	148659862	-	MRA_0104	-	hypothetical protein
106	 61.29	-1	111359..111637	+	92	148659863	nrp1	MRA_0105	-	putative peptide synthetase
107	 65.27	0	111665..118897	+	2410	148659864	nrp2	MRA_0106	-	putative peptide synthetase
108	 65.06	0	119072..121057	+	661	148659865	-	MRA_0107	-	putative integral membrane protein
109	 66.09	0	121273..123531	-	752	148659866	ctpB	MRA_0108	-	cation-transporting P-type ATPase B
110	 63.83	0	123675..125189	+	504	148659867	-	MRA_0109	-	hypothetical protein
111	 67.37	0	125338..125622	-	94	148659868	rpmB	MRA_0110	-	50S ribosomal protein L28
112	 66.42	0	125732..126928	+	398	148659869	-	MRA_0111	-	hypothetical protein
113	 68.65	0	127001..131899	-	1632	148659870	ctpI2	MRA_0112	-	cation-transporter ATPase I CtpI
114	 60.95	-1	132253..132462	-	69	148659871	-	MRA_0114	-	hypothetical protein
115	 72.57	+2	132741..134231	+	496	148659872	-	MRA_0115	-	PE-PGRS family protein
65.43	MEAN

3.37	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.