IslandPath Analysis: Mycobacterium tuberculosis H37Ra



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 65.43   STD DEV: 3.37
Mycobacterium tuberculosis H37Ra, complete genome - 1..4419977
4034 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
563	 65.62	0	642406..644121	-	571	148660320	fadD8	MRA_0558	-	acyl-CoA synthetase
564	 67.35	0	644199..645803	+	534	148660321	-	MRA_0559	-	hypothetical protein
565	 70.23	+1	645800..646780	+	326	148660322	menC	MRA_0560	-	O-succinylbenzoate synthase
566	 64.64	0	646777..647565	+	262	148660323	bpoC	MRA_0561	-	putative bromoperoxidase
567	 69.73	+1	647608..649272	+	554	148660324	menD	MRA_0562	-	2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylic acid synthase/2-oxoglutarate decarboxylase
568	 60.47	-1	649269..649784	+	171	148660325	-	MRA_0563	-	putative transmembrane protein
569	 66.93	0	649846..650982	+	378	148660326	pimB	MRA_0564	-	mannosyltransferase PimB
570	 66.81	0	650999..651703	+	234	148660327	ubiE	MRA_0565	-	ubiquinone/menaquinone biosynthesis methyltransferase
571	 62.54	0	651717..652055	-	112	148660328	-	MRA_0566	-	hypothetical protein
572	 64.88	0	652089..652814	-	241	148660329	-	MRA_0567	-	putative benzoquinone methyltransferase
573	 68.79	0	652839..654065	-	408	148660330	-	MRA_0568	-	putative oxidoreductase
574	 67.76	0	654081..655088	+	335	148660331	grcC1	MRA_0569	-	putative polyprenyl-diphosphate synthase GrcC1
575	 66.20	0	655189..656049	+	286	148660332	htpX	MRA_0570	-	heat shock protein HtpX
576	 65.69	0	656234..657259	-	341	148660333	gpsA1	MRA_0571	-	NAD(P)H-dependent glycerol-3-phosphate dehydrogenase
577	 62.56	0	657320..658780	-	486	148660334	-	MRA_0572	-	putative monooxygenase
578	 62.20	0	658858..659349	-	163	148660335	-	MRA_0573	-	nucleotide-binding protein
579	 63.73	0	659631..660650	+	339	148660336	-	MRA_0574	-	tetracenpmycin polyketide synthesis 8-o-methyltransferase
580	 68.43	0	660760..662178	+	472	148660337	cyp135B1	MRA_0575	-	putative cytochrome p450 135B1 Cyp135B1
581	 63.30	0	662313..662579	+	88	148660338	-	MRA_0576	-	hypothetical protein
582	 67.39	0	662605..664683	+	692	148660339	nrdZ	MRA_0577	-	putative ribonucleoside-diphosphate reductase subunit alpha
583	 66.52	0	664797..666128	-	443	148660340	-	MRA_0578	-	hypothetical protein
584	 59.36	-1	666352..666693	-	113	148660341	-	MRA_0579	-	hypothetical protein
585	 66.24	0	667161..668552	-	463	148660342	-	MRA_0580	-	nicotinate phosphoribosyltransferase
586	 64.92	0	668562..669704	-	380	148660343	-	MRA_0581	-	hypothetical protein
587	 67.01	0	669889..671055	-	388	148660344	-	MRA_0582	-	hypothetical protein
588	 68.20	0	671158..672462	+	434	148660345	-	MRA_0583	-	transcription regulator ArsR
589	 64.76	0	672476..673261	+	261	148660346	-	MRA_0584	-	hypothetical protein
590	 77.89	+2	673306..677226	-	1306	148660347	-	MRA_0585	-	PE-PGRS family protein
591	 65.35	0	677548..678306	+	252	148660348	-	MRA_0586	-	hypothetical protein
592	 64.43	0	678435..678926	-	163	148660349	-	MRA_0587	-	hypothetical protein
593	 70.83	+1	679020..679235	+	71	148660350	-	MRA_0588	-	hypothetical protein
594	 66.08	0	679037..679885	-	282	148660351	-	MRA_0589	-	hypothetical protein
595	 63.90	0	679699..680385	-	228	148660352	lpqN	MRA_0590	-	putative lipoprotein LpqN
596	 64.65	0	680539..683172	+	877	148660353	-	MRA_0591	-	hypothetical protein
597	 64.74	0	683195..685582	-	795	148660354	-	MRA_0592	-	putative integral membrane protein
598	 62.79	0	685720..686442	+	240	148660355	-	MRA_0593	-	GntR family transcriptional regulator
599	 64.54	0	686439..687236	+	265	148660356	yrbE2A	MRA_0594	-	integral membrane protein YrbE2a
600	 64.19	0	687238..688125	+	295	148660357	yrbE2B	MRA_0595	-	integral membrane protein YrbE2b
601	 60.58	-1	688131..689345	+	404	148660358	mce2A	MRA_0596	-	MCE-family protein Mce2A
602	 62.92	0	689342..690169	+	275	148660359	mce2B	MRA_0597	-	MCE-family protein Mce2B
603	 60.00	-1	690118..690372	+	84	148660360	-	MRA_0598	-	MCE family-like protein
604	 65.21	0	690369..691814	+	481	148660361	mce2C	MRA_0599	-	MCE-family protein Mce2C
605	 62.93	0	691811..693337	+	508	148660362	mce2D	MRA_0600	-	MCE-family protein Mce2D
606	 63.52	0	693334..694542	+	402	148660363	lprL	MRA_0601	-	MCE family lipoprotein LprL
607	 63.96	0	694547..696097	+	516	148660364	mce2F	MRA_0602	-	MCE-family protein Mce2F
608	 64.12	0	696149..696541	-	130	148660365	-	MRA_0603	-	hypothetical protein
609	 64.34	0	696538..696795	-	85	148660366	-	MRA_0604	-	hypothetical protein
610	 67.15	0	696978..698213	-	411	148660367	-	MRA_0605	-	hypothetical protein
611	 65.94	0	698464..698877	-	137	148660368	-	MRA_0606	-	hypothetical protein
612	 61.60	-1	698874..699110	-	78	148660369	-	MRA_0607	-	hypothetical protein
613	 68.84	+1	699214..699720	-	168	148660370	-	MRA_0608	-	two component sensor kinase
614	 69.64	+1	699834..700304	-	156	148660371	-	MRA_0608A	-	putative two component sensor kinase
615	 69.16	+1	700348..701109	-	253	148660372	tcrA	MRA_0609	-	putative two component DNA binding transcriptional regulatory protein TcrA
616	 74.68	+2	701166..701477	+	103	148660373	-	MRA_0610	-	hypothetical protein
617	 69.61	+1	701549..702499	+	316	148660374	lpqO	MRA_0611	-	putative lipoprotein LpqO
618	 63.88	0	702716..703324	+	202	148660375	-	MRA_0612	-	IS1536 resolvase
619	 66.53	0	703326..704069	+	247	148660376	-	MRA_0613	-	truncated IS1536 transposase
620	 65.37	0	704123..704509	+	128	148660377	-	MRA_0614	-	hypothetical protein
621	 63.82	0	704554..704799	+	81	148660378	-	MRA_0615	-	hypothetical protein
622	 64.93	0	704796..705197	+	133	148660379	-	MRA_0616	-	hypothetical protein
623	 65.35	0	705140..705367	+	75	148660380	-	MRA_0617	-	hypothetical protein
624	 64.76	0	705650..706069	+	139	148660381	-	MRA_0618	-	hypothetical protein
625	 69.08	+1	706062..707219	-	385	148660382	-	MRA_0619	-	hypothetical protein
626	 63.80	0	707271..707654	-	127	148660383	-	MRA_0620	-	hypothetical protein
627	 71.12	+1	707634..708239	+	201	148660384	-	MRA_0621	-	hypothetical protein
628	 71.30	+1	708258..710825	-	855	148660385	-	MRA_0622	-	hypothetical protein
629	 66.67	0	710666..711658	+	330	148660386	-	MRA_0623	-	hypothetical protein
630	 68.31	0	711655..711897	+	80	148660387	-	MRA_0624	-	putative integral membrane protein
631	 65.17	0	711894..712160	-	88	148660388	-	MRA_0625	-	hypothetical protein
632	 64.93	0	712316..712717	+	133	148660389	-	MRA_0626	-	hypothetical protein
633	 70.26	+1	712846..713541	+	231	148660390	galTa	MRA_0627	-	putative galactose-1-phosphate uridylyltransferase GalTa
634	 64.23	0	713538..714029	+	163	148660391	galTb	MRA_0628	-	putative galactose-1-phosphate uridylyltransferase GalTb
635	 72.53	+2	714026..715117	+	363	148660392	galK	MRA_0629	-	galactokinase
636	 69.67	+1	715512..716576	+	354	148660393	-	MRA_0630	-	hypothetical protein
637	 63.92	0	716680..717627	+	315	148660394	-	MRA_0631	-	hypothetical protein
638	 69.02	+1	717720..717974	+	84	148660395	-	MRA_0632	-	hypothetical protein
639	 64.39	0	717974..718369	+	131	148660396	-	MRA_0633	-	hypothetical protein
640	 69.64	+1	718463..719203	-	246	148660397	-	MRA_0634	-	putative transmembrane protein
641	 70.11	+1	719335..719595	+	86	148660398	-	MRA_0635	-	hypothetical protein
642	 68.87	+1	719592..719999	+	135	148660399	-	MRA_0636	-	hypothetical protein
643	 72.22	+2	720071..721222	-	383	148660400	-	MRA_0637	-	hypothetical protein
644	 69.97	+1	721315..723042	-	575	148660401	recD	MRA_0638	-	putative exonuclease V alpha chain
645	 70.17	+1	723039..726323	-	1094	148660402	recB	MRA_0639	-	exodeoxyribonuclease V subunit beta
646	 71.55	+1	726323..729616	-	1097	148660403	recC	MRA_0640	-	exodeoxyribonuclease V subunit gamma
647	 63.65	0	729893..730588	-	231	148660404	echA3	MRA_0641	-	enoyl-CoA hydratase
648	 66.07	0	730637..731476	-	279	148660405	-	MRA_0642	-	hypothetical protein
649	 61.62	-1	731630..732343	-	237	148660406	-	MRA_0643	-	putative glyoxalase II
650	 61.11	-1	732423..732674	+	83	148660407	-	MRA_0644	-	hypothetical protein
651	 58.93	-1	733022..733189	+	55	148660408	rpmG	MRA_0645	-	50S ribosomal protein L33
652	 59.26	-1	733240..733698	+	152	148660409	-	MRA_0646	-	(3R)-hydroxyacyl-ACP dehydratase subunit HadA
653	 62.47	0	733698..734126	+	142	148660410	-	MRA_0647	-	(3R)-hydroxyacyl-ACP dehydratase subunit HadB
654	 60.71	-1	734212..734631	+	139	148660411	-	MRA_0648	-	(3R)-hydroxyacyl-ACP dehydratase subunit HadC
655	 64.61	0	735043..735528	+	161	148660412	secE	MRA_0649	-	preprotein translocase subunit SecE
656	 63.88	0	735560..736276	+	238	148660413	nusG	MRA_0650	-	transcription antitermination protein NusG
657	 63.17	0	736328..736756	+	142	148660414	rplK	MRA_0651	-	50S ribosomal protein L11
658	 64.69	0	736823..737530	+	235	148660415	rplA	MRA_0652	-	50S ribosomal protein L1
659	 60.15	-1	737604..738509	-	301	148660416	mmaA4	MRA_0653	-	methoxy mycolic acid synthase 4
660	 59.18	-1	738574..739455	-	293	148660417	mmaA3	MRA_0654	-	methoxy mycolic acid synthase 3
661	 62.73	0	739603..740466	-	287	148660418	mmaA2	MRA_0655	-	methoxy mycolic acid synthase 2
662	 59.93	-1	740633..741493	-	286	148660419	mmaA1	MRA_0656	-	methoxy mycolic acid synthase 1
65.43	MEAN

3.37	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.