IslandPathversion 1.0

IslandPath Analysis: Mycobacterium tuberculosis H37Ra



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 65.43 STD DEV: 3.37
Mycobacterium tuberculosis H37Ra, complete genome - 1..4419977
4034 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
3935	 57.49	-2	4300085..4301620	-	511	148663692	papA1	MRA_3864	-	putative polyketide synthase associated protein PapA1
3936	 65.51	0	4301671..4308051	-	2126	148663693	pks2	MRA_3865	-	polyketide synthase Pks2
3937	 57.55	-2	4308258..4310012	+	584	148663694	fadD23	MRA_3866	-	acyl-CoA synthetase
3938	 66.01	0	4310009..4311235	-	408	148663695	-	MRA_3867	-	IS1537 transposase
3939	 63.24	0	4311232..4311843	-	203	148663696	-	MRA_3868	-	IS1537 resolvase
3940	 64.25	0	4311844..4313454	-	536	148663697	-	MRA_3869	-	putative oxidoreductase
3941	 64.60	0	4313502..4314131	-	209	148663698	-	MRA_3870	-	TetR family transcriptional regulator
3942	 62.32	0	4314203..4314685	+	160	148663699	-	MRA_3871	-	hypothetical protein
3943	 65.45	0	4314682..4315257	-	191	148663700	-	MRA_3872	-	hypothetical protein
3944	 65.53	0	4315313..4316104	+	263	148663701	-	MRA_3873	-	AraC family transcription regulator
3945	 67.78	0	4316101..4317360	-	419	148663702	serS	MRA_3874	-	seryl-tRNA synthetase
3946	 69.85	+1	4317493..4318842	+	449	148663703	-	MRA_3875	-	hypothetical protein
3947	 64.01	0	4318847..4319260	+	137	148663704	-	MRA_3876	-	hypothetical protein
3948	 67.10	0	4319455..4320153	-	232	148663705	-	MRA_3877	-	putative phosphoglycerate mutase
3949	 68.94	+1	4320150..4321115	-	321	148663706	pheA	MRA_3878	-	prephenate dehydratase
3950	 66.92	0	4321211..4321987	+	258	148663707	-	MRA_3879	-	hypothetical protein
3951	 64.25	0	4322013..4322426	+	137	148663708	-	MRA_3880	-	putative transcriptional regulatory protein
3952	 59.52	-1	4322624..4323169	+	181	148663709	bfrB	MRA_3881	-	ferritin family protein
3953	 66.55	0	4323184..4324008	-	274	148663710	glpQ1	MRA_3882	-	putative glycerophosphoryl diester phosphodiesterase
3954	 67.06	0	4324014..4325042	-	342	148663711	-	MRA_3883	-	putative transmembrane protein
3955	 65.65	0	4327221..4327712	+	163	148663712	-	MRA_3884	-	putative transposase
3956	 68.61	0	4327727..4328086	+	119	148663713	-	MRA_3885	-	hypothetical protein
3957	 59.29	-1	4329150..4329773	+	207	148663714	sodA	MRA_3886	-	superoxide dismutase
3958	 61.61	-1	4329984..4330517	+	177	148663715	-	MRA_3887	-	hypothetical protein
3959	 67.11	0	4330772..4331680	+	302	148663716	-	MRA_3888	-	putative transmembrane protein
3960	 64.91	0	4331945..4332343	+	132	148663717	-	MRA_3889	-	hypothetical protein
3961	 68.49	0	4332461..4333117	+	218	148663718	-	MRA_3890	-	hypothetical protein
3962	 70.18	+1	4333129..4333413	+	94	148663719	-	MRA_3891	-	hypothetical protein
3963	 65.19	0	4333520..4333924	+	134	148663720	hns	MRA_3892	-	putative histone-like protein Hns
3964	 64.98	0	4333941..4334414	+	157	148663721	menG	MRA_3893	-	ribonuclease activity regulator protein RraA
3965	 62.11	0	4334450..4335919	-	489	148663722	ethA	MRA_3894	-	monooxygenase EthA
3966	 65.28	0	4335995..4336645	+	216	148663723	ethR	MRA_3895	-	TetR family transcriptional regulator
3967	 67.06	0	4336847..4337854	-	335	148663724	-	MRA_3896	-	hypothetical protein
3968	 60.61	-1	4337863..4338060	-	65	148663725	-	MRA_3897	-	hypothetical protein
3969	 65.17	0	4338485..4339951	-	488	148663726	gltD	MRA_3898	-	glutamate synthase subunit beta
3970	 64.01	0	4339944..4344527	-	1527	148663727	gltB	MRA_3899	-	glutamate synthase large subunit
3971	 67.01	0	4345223..4346395	+	390	148663728	-	MRA_3900	-	hypothetical protein
3972	 65.81	0	4346617..4346967	-	116	148663729	whiB6	MRA_3901	-	putative transcriptional regulatory protein whib-like WhiB6
3973	 65.73	0	4347295..4348473	+	392	148663730	-	MRA_3902	-	hypothetical protein
3974	 62.03	-1	4348716..4349924	+	402	148663731	-	MRA_3903	-	hypothetical protein
3975	 57.37	-2	4350012..4350323	+	103	148663732	-	MRA_3904	-	hypothetical protein
3976	 66.67	0	4350326..4351177	+	283	148663733	-	MRA_3905	-	hypothetical protein
3977	 63.77	0	4351216..4351767	+	183	148663734	-	MRA_3906	-	hypothetical protein
3978	 64.40	0	4351760..4353481	+	573	148663735	-	MRA_3907	-	hypothetical protein
3979	 64.52	0	4353485..4354927	+	480	148663736	-	MRA_3908	-	hypothetical protein
3980	 63.10	0	4354927..4357170	+	747	148663737	-	MRA_3909	-	putative transmembrane protein
3981	 63.12	0	4357273..4359048	+	591	148663738	-	MRA_3910	-	hypothetical protein
3982	 65.33	0	4359191..4359490	+	99	148663739	-	MRA_3911	-	PPE family protein
3983	 67.48	0	4359521..4360627	+	368	148663740	-	MRA_3912	-	PPE family protein
3984	 63.37	0	4360720..4361022	+	100	148663741	esxB	MRA_3913	-	antigen EsxB
3985	 61.11	-1	4361055..4361342	+	95	148663742	esxA	MRA_3914	-	early secretory antigenic target EsxA
3986	 66.27	0	4361456..4363456	+	666	148663743	-	MRA_3915	-	hypothetical protein
3987	 64.58	0	4363453..4364988	+	511	148663744	-	MRA_3916	-	putative transmembrane protein
3988	 66.79	0	4365139..4365981	+	280	148663745	-	MRA_3917	-	hypothetical protein
3989	 67.49	0	4366039..4368228	-	729	148663746	-	MRA_3918	-	hypothetical protein
3990	 64.37	0	4368645..4368992	-	115	148663747	-	MRA_3919	-	hypothetical protein
3991	 65.08	0	4368989..4370371	-	460	148663748	-	MRA_3920	-	hypothetical protein
3992	 66.23	0	4370478..4371866	-	462	148663749	-	MRA_3921	-	hypothetical protein
3993	 68.83	+1	4371863..4373203	-	446	148663750	mycP1	MRA_3922	-	membrane-anchored mycosin Mycp1
3994	 62.69	0	4373425..4375284	-	619	148663751	-	MRA_3923	-	putative CbxX/CfqX family protein
3995	 65.80	0	4375354..4376967	-	537	148663752	-	MRA_3924	-	hypothetical protein
3996	 67.94	0	4376964..4378616	-	550	148663753	mycP2	MRA_3925	-	putative alanine and proline rich membrane-anchored mycosin MycP2
3997	 64.90	0	4378601..4380130	-	509	148663754	-	MRA_3926	-	putative transmembrane protein
3998	 60.04	-1	4380127..4381152	-	341	148663755	-	MRA_3927	-	hypothetical protein
3999	 67.15	0	4381246..4382076	-	276	148663756	-	MRA_3928	-	hypothetical protein
4000	 60.76	-1	4382172..4382459	-	95	148663757	esxC	MRA_3929	-	esat-6 like protein EsxC
4001	 60.80	-1	4382495..4382818	-	107	148663758	esxD	MRA_3930	-	putative esat-6 like protein EsxD
4002	 71.00	+1	4382930..4384129	-	399	148663759	-	MRA_3931	-	PPE family protein
4003	 67.09	0	4384208..4384441	-	77	148663760	-	MRA_3932	-	PE family protein
4004	 64.16	0	4384708..4388898	-	1396	148663761	-	MRA_3933	-	hypothetical protein
4005	 69.62	+1	4388899..4390386	-	495	148663762	-	MRA_3934	-	hypothetical protein
4006	 67.99	0	4390389..4391297	-	302	148663763	-	MRA_3935	-	hypothetical protein
4007	 69.98	+1	4391454..4392086	-	210	148663764	-	MRA_3936	-	hypothetical protein
4008	 65.77	0	4392099..4392431	-	110	148663765	-	MRA_3937	-	hypothetical protein
4009	 71.05	+1	4392593..4393825	-	410	148663766	-	MRA_3938	-	hypothetical protein
4010	 63.89	0	4393819..4394754	-	311	148663767	-	MRA_3939	-	hypothetical protein
4011	 64.44	0	4394811..4395260	-	149	148663768	-	MRA_3940	-	hypothetical protein
4012	 51.60	-2	4395811..4396341	-	176	148663769	-	MRA_3941	-	hypothetical protein
4013	 66.16	0	4396338..4398878	-	846	148663770	-	MRA_3942	-	hypothetical protein
4014	 67.03	0	4398883..4399155	-	90	148663771	esxE	MRA_3943	-	putative esat-6 like protein EsxE
4015	 68.27	0	4399166..4399477	-	103	148663772	esxF	MRA_3944	-	putative esat-6 like protein EsxF
4016	 67.84	0	4399543..4400052	-	169	148663773	-	MRA_3945	-	hypothetical protein
4017	 66.53	0	4400077..4401519	-	480	148663774	pcnA	MRA_3946	-	polyA polymerase
4018	 69.21	+1	4401895..4402641	+	248	148663775	-	MRA_3947	-	hypothetical protein
4019	 68.91	+1	4402638..4405046	+	802	148663776	-	MRA_3948	-	hypothetical protein
4020	 67.71	0	4405043..4408597	+	1184	148663777	-	MRA_3949	-	putative transmembrane protein
4021	 70.56	+1	4408632..4409222	+	196	148663778	sigM	MRA_3950	-	RNA polymerase sigma factor SigM
4022	 70.07	+1	4409315..4410079	+	254	148663779	-	MRA_3951	-	hypothetical protein
4023	 66.07	0	4410173..4411180	+	335	148663780	trxB2	MRA_3952	-	thioredoxin reductase TrxB2
4024	 58.97	-1	4411177..4411527	+	116	148663781	trxC	MRA_3953	-	thioredoxin TrxC
4025	 62.74	0	4411637..4412857	+	406	148663782	-	MRA_3954	-	N-acetymuramyl-L-alanine amidase-related protein
4026	 63.54	0	4412878..4413612	-	244	148663783	-	MRA_3955	-	hypothetical protein
4027	 64.06	0	4413902..4414936	-	344	148663784	parB	MRA_3956	-	putative chromosome partitioning protein ParB
4028	 62.55	0	4414933..4415976	-	347	148663785	parA	MRA_3957	-	chromosome partitioning protein ParA
4029	 66.07	0	4415973..4416647	-	224	148663786	gidB	MRA_3958	-	glucose-inhibited division protein B
4030	 64.18	0	4416779..4417342	-	187	148663787	-	MRA_3959	-	putative Jag protein
4031	 60.04	-1	4417414..4418514	-	366	148663788	-	MRA_3960	-	putative inner membrane protein translocase component YidC
4032	 60.06	-1	4418498..4418860	-	120	148663789	-	MRA_3961	-	hypothetical protein
4033	 62.96	0	4418857..4419234	-	125	148663790	rnpA	MRA_3962	-	ribonuclease P
4034	 63.89	0	4419231..4419374	-	47	148663791	rpmH	MRA_3963	-	50S ribosomal protein L34
65.43	MEAN

3.37	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.