IslandPathversion 1.0

IslandPath Analysis: Mycobacterium tuberculosis H37Ra



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 65.43 STD DEV: 3.37
Mycobacterium tuberculosis H37Ra, complete genome - 1..4419977
4034 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
3729	 67.50	0	4070974..4071696	+	240	148663486	lpqG	MRA_3659	-	putative lipoprotein LpqG
3730	 64.67	0	4071701..4072351	-	216	148663487	hpt	MRA_3660	-	hypoxanthine-guanine phosphoribosyltransferase
3731	 70.88	+1	4072348..4073319	-	323	148663488	mesJ	MRA_3661	-	putative cell cycle protein MesJ
3732	 66.48	0	4073298..4074350	-	350	148663489	-	MRA_3662	-	hypothetical protein
3733	 68.47	0	4074347..4075732	-	461	148663490	-	MRA_3663	-	D-alanyl-D-alanine carboxypeptidase
3734	 63.80	0	4075870..4076358	+	162	148663491	ppa	MRA_3664	-	inorganic pyrophosphatase
3735	 62.11	0	4076404..4077501	-	365	148663492	-	MRA_3665	-	putative integral membrane protein
3736	 67.52	0	4077622..4078917	+	431	148663493	-	MRA_3666	-	putative integral membrane protein
3737	 63.09	0	4078961..4079686	+	241	148663494	-	MRA_3667	-	glycosyl transferase
3738	 62.03	-1	4079683..4080027	+	114	148663495	-	MRA_3668	-	hypothetical protein
3739	 64.84	0	4080238..4081113	+	291	148663496	-	MRA_3669	-	hypothetical protein
3740	 64.87	0	4081114..4082058	-	314	148663497	galE1	MRA_3670	-	NAD-dependent epimerase/dehydratase family protein
3741	 66.84	0	4082081..4083856	+	591	148663498	-	MRA_3671	-	hypothetical protein
3742	 66.38	0	4084199..4084546	+	115	148663499	-	MRA_3672	-	ISMt3-like transposase A1
3743	 65.27	0	4084931..4085431	+	166	148663500	-	MRA_3673	-	ISMt3-like transposase A2
3744	 65.19	0	4085431..4086177	+	248	148663501	-	MRA_3674	-	transposase
3745	 67.72	0	4086331..4086897	-	188	148663502	-	MRA_3675	-	hypothetical protein
3746	 64.55	0	4086967..4088196	-	409	148663503	-	MRA_3676	-	IS1245-like transposase
3747	 63.21	0	4088372..4089007	-	211	148663504	fic	MRA_3677	-	putative cell filamentation protein Fic
3748	 65.13	0	4089018..4089212	-	64	148663505	-	MRA_3677A	-	hypothetical protein
3749	 66.67	0	4089607..4089798	+	63	148663506	-	MRA_3678	-	hypothetical protein
3750	 69.73	+1	4089963..4091168	-	401	148663507	-	MRA_3679	-	DNA polymerase III subunit delta'
3751	 65.88	0	4091254..4092903	+	549	148663508	-	MRA_3680	-	putative adenylate cyclase
3752	 65.85	0	4092900..4095704	-	934	148663509	topA	MRA_3681	-	DNA topoisomerase I
3753	 70.29	+1	4096057..4096635	-	192	148663510	-	MRA_3682	-	hypothetical protein
3754	 59.80	-1	4096775..4096978	-	67	148663511	cspA	MRA_3683	-	putative cold shock protein A
3755	 68.44	0	4097228..4099543	+	771	148663512	-	MRA_3684	-	DeaD/DeaH box family ATP-dependent RNA helicase
3756	 70.88	+1	4099680..4099964	+	94	148663513	-	MRA_3685	-	PE family protein
3757	 63.78	0	4100288..4101325	+	345	148663514	-	MRA_3686	-	hypothetical protein
3758	 66.26	0	4101840..4102085	-	81	148663515	-	MRA_3687	-	hypothetical protein
3759	 76.54	+2	4102246..4102974	+	242	148663516	-	MRA_3688	-	PE-PGRS family protein
3760	 73.46	+2	4103107..4103430	-	107	148663517	-	MRA_3689	-	hypothetical protein
3761	 65.19	0	4103447..4103989	-	180	148663518	-	MRA_3690	-	hypothetical protein
3762	 72.39	+2	4103986..4104666	-	226	148663519	-	MRA_3691	-	putative alanine rich membrane protein
3763	 70.54	+1	4104585..4105385	-	266	148663520	-	MRA_3692	-	putative transmembrane protein
3764	 68.65	0	4105382..4106440	-	352	148663521	-	MRA_3693	-	putative secretory protein
3765	 70.66	+1	4106542..4107594	-	350	148663522	-	MRA_3694	-	hypothetical protein
3766	 65.97	0	4108093..4108956	+	287	148663523	-	MRA_3695	-	hypothetical protein
3767	 72.50	+2	4109711..4110481	-	256	148663524	-	MRA_3696	-	hypothetical protein
3768	 66.91	0	4110478..4112124	-	548	148663525	dppD	MRA_3697	-	peptide ABC transporter ATP-binding protein
3769	 64.04	0	4112121..4112921	-	266	148663526	dppC	MRA_3698	-	peptide ABC transporter permease protein
3770	 63.75	0	4112977..4113903	-	308	148663527	dppB	MRA_3699	-	peptide ABC transporter permease protein
3771	 64.94	0	4113905..4115530	-	541	148663528	dppA	MRA_3700	-	peptide ABC transporter permease protein
3772	 66.67	0	4115616..4115972	+	118	148663529	-	MRA_3701	-	peptide ABC transporter substrate-binding protein
3773	 65.34	0	4116238..4118193	+	651	148663530	acs	MRA_3702	-	acetyl-CoA synthetase
3774	 66.67	0	4118229..4118927	-	232	148663531	-	MRA_3703	-	putative protease
3775	 61.08	-1	4119273..4119791	+	172	148663532	-	MRA_3704	-	putative transmembrane protein
3776	 67.99	0	4119792..4120775	+	327	148663533	ephE	MRA_3705	-	putative epoxide hydrolase EphE
3777	 66.25	0	4120768..4121961	-	397	148663534	-	MRA_3706	-	membrane-associated serine protease
3778	 68.61	0	4121967..4122788	-	273	148663535	-	MRA_3707	-	hypothetical protein
3779	 69.74	+1	4122920..4123603	-	227	148663536	-	MRA_3708	-	thioredoxin-related protein
3780	 64.91	0	4123603..4124340	-	245	148663537	nth	MRA_3709	-	ultraviolet N-glycosylase/AP lyase
3781	 62.43	0	4124448..4124825	+	125	148663538	-	MRA_3710	-	hypothetical protein
3782	 64.74	0	4124924..4125598	+	224	148663539	-	MRA_3711	-	Crp/Fnr family transcriptional regulator
3783	 65.03	0	4125704..4126498	-	264	148663540	-	MRA_3712	-	putative hydrolase
3784	 67.11	0	4126505..4126960	-	151	148663541	-	MRA_3713	-	hypothetical protein
3785	 63.93	0	4127222..4128244	+	340	148663542	-	MRA_3714	-	putative anion transporter ATPase
3786	 64.17	0	4128241..4129401	+	386	148663543	-	MRA_3715	-	putative anion transporter ATPase
3787	 62.46	0	4129644..4130000	-	118	148663544	whiB4	MRA_3716	-	WhiB-related protein
3788	 65.31	0	4130362..4132794	+	810	148663545	ponA2	MRA_3717	-	bifunctional membrane-associated penicillin-binding protein 1A/1B PonA2
3789	 67.08	0	4132863..4133822	+	319	148663546	-	MRA_3718	-	hypothetical protein
3790	 65.61	0	4133885..4134925	+	346	148663547	-	MRA_3719	-	cysteine synthase/cystathionine beta-synthase family protein
3791	 65.97	0	4135741..4137171	-	476	148663548	cyp137	MRA_3720	-	putative cytochrome p450 137 CYP137
3792	 67.57	0	4137197..4137529	-	110	148663549	-	MRA_3721	-	hypothetical protein
3793	 58.27	-2	4137769..4138137	-	122	148663550	rsfB	MRA_3722	-	anti-anti-sigma factor RsfB
3794	 63.87	0	4138339..4138803	-	154	148663551	-	MRA_3723	-	hypothetical protein
3795	 67.26	0	4138803..4140158	+	451	148663552	-	MRA_3724	-	putative transmembrane protein
3796	 64.22	0	4140185..4140838	+	217	148663553	-	MRA_3725	-	hypothetical protein
3797	 65.57	0	4140964..4141965	+	333	148663554	-	MRA_3726	-	hypothetical protein
3798	 66.48	0	4141962..4143038	+	358	148663555	moxR2	MRA_3727	-	putative methanol dehydrogenase transcriptional regulatory protein MoxR2
3799	 69.46	+1	4143172..4144494	+	440	148663556	-	MRA_3728	-	hypothetical protein
3800	 64.55	0	4144568..4145560	-	330	148663557	-	MRA_3729	-	hypothetical protein
3801	 67.42	0	4145652..4146584	+	310	148663558	-	MRA_3730	-	hypothetical protein
3802	 64.29	0	4146648..4148201	-	517	148663559	glpK	MRA_3731	-	glycerol kinase
3803	 62.33	0	4148251..4148688	-	145	148663560	-	MRA_3732	-	hypothetical protein
3804	 60.89	-1	4148685..4148909	-	74	148663561	-	MRA_3733	-	hypothetical protein
3805	 63.27	0	4148939..4150468	+	509	148663562	-	MRA_3734	-	hypothetical protein
3806	 65.53	0	4150490..4151191	+	233	148663563	-	MRA_3735	-	hypothetical protein
3807	 70.42	+1	4151194..4152366	-	390	148663564	-	MRA_3736	-	pyridoxal-phosphate-dependent transferase
3808	 63.56	0	4152397..4153362	-	321	148663565	-	MRA_3737	-	hypothetical protein
3809	 66.81	0	4153359..4154060	-	233	148663566	-	MRA_3738	-	hypothetical protein
3810	 68.78	0	4154060..4155337	-	425	148663567	-	MRA_3739	-	hypothetical protein
3811	 68.28	0	4155334..4156632	-	432	148663568	gshA	MRA_3740	-	putative glutamate--cysteine ligase
3812	 65.74	0	4156764..4157408	-	214	148663569	-	MRA_3741	-	hypothetical protein
3813	 69.49	+1	4157537..4157926	-	129	148663570	-	MRA_3742	-	hypothetical protein
3814	 67.29	0	4158037..4158357	-	106	148663571	-	MRA_3743	-	hypothetical protein
3815	 68.55	0	4158476..4159486	-	336	148663572	-	MRA_3744	-	hypothetical protein
3816	 68.69	0	4159626..4160663	-	345	148663573	asd	MRA_3745	-	aspartate-semialdehyde dehydrogenase
3817	 66.03	0	4160664..4161929	-	421	148663574	ask	MRA_3746	-	aspartate kinase
3818	 66.10	0	4162186..4164120	+	644	148663575	leuA	MRA_3747	-	2-isopropylmalate synthase
3819	 67.58	0	4164186..4165175	-	329	148663576	dnaQ	MRA_3748	-	DNA polymerase III subunit epsilon
3820	 70.45	+1	4165427..4166668	+	413	148663577	-	MRA_3749	-	putative ligase
3821	 69.40	+1	4166673..4167368	+	231	148663578	cobQ2	MRA_3750	-	cobyric acid synthase
3822	 65.43	0	4167377..4168267	-	296	148663579	-	MRA_3751	-	hypothetical protein
3823	 65.69	0	4168335..4168946	-	203	148663580	recR	MRA_3752	-	recombination protein RecR
3824	 67.91	0	4168958..4169359	-	133	148663581	-	MRA_3753	-	hypothetical protein
3825	 66.39	0	4169494..4170219	+	241	148663582	-	MRA_3754	-	hypothetical protein
3826	 63.51	0	4170261..4170704	-	147	148663583	-	MRA_3755	-	hypothetical protein
3827	 61.92	-1	4170752..4172164	+	470	148663584	-	MRA_3756	-	hypothetical protein
3828	 63.82	0	4172182..4173444	+	420	148663585	-	MRA_3757	-	putative fatty acid synthase
65.43	MEAN

3.37	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.