IslandPathversion 1.0

IslandPath Analysis: Mycobacterium tuberculosis H37Ra



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 65.43 STD DEV: 3.37
Mycobacterium tuberculosis H37Ra, complete genome - 1..4419977
4034 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
3588	 64.93	0	3909170..3909859	-	229	148663345	-	MRA_3521	-	hypothetical protein
3589	 65.90	0	3910001..3910783	-	260	148663346	-	MRA_3522	-	hypothetical protein
3590	 66.82	0	3910827..3911489	-	220	148663347	-	MRA_3523	-	hypothetical protein
3591	 65.76	0	3911755..3913293	+	512	148663348	cpsA	MRA_3524	-	hypothetical protein
3592	 64.66	0	3913299..3914243	-	314	148663349	-	MRA_3525	-	short chain dehydrogenase
3593	 64.44	0	3914449..3914898	+	149	148663350	-	MRA_3526	-	hypothetical protein
3594	 64.87	0	3914851..3915684	-	277	148663351	lipF	MRA_3527	-	esterase LipF
3595	 71.30	+1	3916344..3916667	+	107	148663352	-	MRA_3528	-	hypothetical protein
3596	 60.00	-1	3916749..3916913	+	54	148663353	-	MRA_3529	-	hypothetical protein
3597	 65.60	0	3916913..3918415	+	500	148663354	otsA	MRA_3530	-	putative alpha, alpha-trehalose-phosphate synthase
3598	 62.35	0	3918567..3919145	+	192	148663355	-	MRA_3531	-	hypothetical protein
3599	 60.87	-1	3919142..3919624	-	160	148663356	-	MRA_3532	-	Mce associated protein
3600	 67.08	0	3919624..3920352	-	242	148663357	-	MRA_3533	-	Mce associated alanine and valine rich protein
3601	 67.91	0	3920352..3922046	-	564	148663358	mce4F	MRA_3534	-	MCE-family protein Mce4F
3602	 62.25	0	3922057..3923211	-	384	148663359	lprN	MRA_3535	-	MCE family lipoprotein LprN
3603	 66.22	0	3923208..3924563	-	451	148663360	mce4D	MRA_3536	-	MCE-family protein Mce4D
3604	 64.06	0	3924560..3925633	-	357	148663361	mce4C	MRA_3537	-	MCE-family protein Mce4C
3605	 64.29	0	3925623..3926675	-	350	148663362	mce4B	MRA_3538	-	MCE-family protein Mce4B
3606	 61.35	-1	3926675..3927877	-	400	148663363	mce4A	MRA_3539	-	MCE-family protein Mce4A
3607	 62.99	0	3927897..3928739	-	280	148663364	yrbE4B	MRA_3540	-	integral membrane protein YrbE4b
3608	 62.88	0	3928774..3929538	-	254	148663365	yrbE4A	MRA_3541	-	integral membrane protein YrbE4a
3609	 67.40	0	3929764..3930717	-	317	148663366	fabG	MRA_3542	-	3-ketoacyl-(acyl-carrier-protein) reductase
3610	 62.50	0	3930742..3930933	-	63	148663367	fdxD	MRA_3543	-	putative ferredoxin FdxD
3611	 65.84	0	3931148..3932350	+	400	148663368	fadE26	MRA_3544	-	acyl-CoA dehydrogenase FadE26
3612	 68.36	0	3932375..3933496	+	373	148663369	fadE27	MRA_3545	-	acyl-CoA dehydrogenase FadE27
3613	 66.40	0	3933567..3935075	+	502	148663370	fadD17	MRA_3546	-	acyl-CoA synthetase
3614	 78.39	+2	3935246..3939391	+	1381	148663371	-	MRA_3547	-	PE-PGRS family protein
3615	 80.49	+2	3939682..3944319	+	1545	148663372	-	MRA_3548	-	PE-PGRS family protein
3616	 68.35	0	3946368..3947915	-	515	148663373	ilvX	MRA_3549	-	hypothetical protein
3617	 64.16	0	3947912..3948748	-	278	148663374	-	MRA_3550	-	hypothetical protein
3618	 76.97	+2	3949108..3951261	+	717	148663375	-	MRA_3551	-	PE-PGRS family protein
3619	 65.14	0	3954592..3955248	-	218	148663376	fadD18	MRA_3552	-	fatty-acid-CoA ligase FadD18
3620	 80.89	+2	3955294..3958929	+	1211	148663377	-	MRA_3553	-	PE-PGRS family protein
3621	 64.36	0	3959490..3961136	-	548	148663378	fadD19	MRA_3554	-	acyl-CoA synthetase
3622	 66.79	0	3961210..3962001	+	263	148663379	echA19	MRA_3555	-	enoyl-CoA hydratase
3623	 67.02	0	3962097..3962936	+	279	148663380	-	MRA_3556	-	hypothetical protein
3624	 64.41	0	3962991..3964187	-	398	148663381	cyp142	MRA_3557	-	putative cytochrome p450 monooxygenase 142 CYP142
3625	 65.40	0	3964216..3964926	+	236	148663382	-	MRA_3558	-	hypothetical protein
3626	 67.43	0	3964991..3966034	-	347	148663383	-	MRA_3559	-	N5,N10-methylenetetrahydromethanopterin reductase-related protein
3627	 66.12	0	3966187..3967098	+	303	148663384	-	MRA_3560	-	hypothetical protein
3628	 65.63	0	3967114..3968178	+	354	148663385	ltp4	MRA_3561	-	lipid-transfer protein
3629	 65.49	0	3968195..3969379	+	394	148663386	ltp3	MRA_3562	-	acetyl-CoA acetyltransferase
3630	 62.02	-1	3969421..3970452	+	343	148663387	-	MRA_3563	-	hypothetical protein
3631	 66.67	0	3970466..3970990	-	174	148663388	-	MRA_3564	-	putative siderophore binding protein
3632	 60.72	-1	3971105..3972265	+	386	148663389	-	MRA_3565	-	putative oxidoreductase
3633	 64.89	0	3972271..3972720	+	149	148663390	-	MRA_3566	-	hypothetical protein
3634	 48.60	-2	3973145..3973858	-	237	148663391	-	MRA_3567	-	hypothetical protein
3635	 62.51	0	3974550..3975704	-	384	148663392	-	MRA_3568	-	hypothetical protein
3636	 62.58	0	3975704..3976486	-	260	148663393	-	MRA_3569	-	short chain dehydrogenase
3637	 64.18	0	3976483..3977610	-	375	148663394	-	MRA_3570	-	hypothetical protein
3638	 66.50	0	3978009..3979229	+	406	148663395	-	MRA_3571	-	PPE family protein
3639	 65.81	0	3979371..3981119	-	582	148663396	-	MRA_3572	-	PPE family protein
3640	 66.38	0	3981218..3982258	-	346	148663397	bphI	MRA_3573	-	4-hydroxy-2-ketovalerate aldolase
3641	 66.78	0	3982255..3983166	-	303	148663398	mhpF	MRA_3574	-	acetaldehyde dehydrogenase
3642	 66.41	0	3983177..3983962	-	261	148663399	mhpD	MRA_3575	-	2-keto-4-pentenoate hydratase
3643	 64.72	0	3984035..3985726	+	563	148663400	-	MRA_3576	-	3-ketosteroid-delta-1-dehydrogenase
3644	 66.32	0	3985728..3986588	+	286	148663401	-	MRA_3577	-	MaoC-like dehydratase
3645	 65.76	0	3986725..3988164	+	479	148663402	-	MRA_3578	-	PPE family protein
3646	 65.89	0	3988165..3989325	-	386	148663403	ltp2	MRA_3579	-	lipid-transfer protein
3647	 61.28	-1	3989325..3989714	-	129	148663404	-	MRA_3580	-	hypothetical protein
3648	 64.21	0	3989711..3990646	-	311	148663405	-	MRA_3581	-	hypothetical protein
3649	 64.86	0	3990643..3991806	-	387	148663406	fadE29	MRA_3582	-	acyl-CoA dehydrogenase FadE29
3650	 66.67	0	3991791..3992810	-	339	148663407	fadE28	MRA_3583	-	acyl-CoA dehydrogenase FadE28
3651	 62.06	0	3992810..3994111	-	433	148663408	cyp125	MRA_3584	-	putative cytochrome p450 125 CYP125
3652	 69.39	+1	3994223..3995398	+	391	148663409	fadA5	MRA_3585	-	acetyl-CoA acetyltransferase
3653	 60.96	-1	3995510..3995965	+	151	148663410	-	MRA_3586	-	hypothetical protein
3654	 68.63	0	3996048..3996962	-	304	148663411	-	MRA_3587	-	short chain dehydrogenase
3655	 66.67	0	3996985..3997764	-	259	148663412	-	MRA_3588	-	short chain dehydrogenase
3656	 68.15	0	3997819..3998562	+	247	148663413	echA20	MRA_3589	-	enoyl-CoA hydratase
3657	 67.35	0	3998562..3999440	+	292	148663414	-	MRA_3590	-	putative CoA-transferase subunit alpha
3658	 66.00	0	3999437..4000189	+	250	148663415	-	MRA_3591	-	putative CoA-transferase subunit beta
3659	 68.73	0	4000287..4001354	+	355	148663416	-	MRA_3592	-	putative oxidoreductase
3660	 66.28	0	4001351..4003408	+	685	148663417	fdxB	MRA_3593	-	electron transfer protein FdxB
3661	 67.47	0	4003496..4004365	-	289	148663418	-	MRA_3594	-	hypothetical protein
3662	 66.67	0	4004470..4005630	-	386	148663419	fadA6	MRA_3595	-	acetyl-CoA acetyltransferase
3663	 62.35	0	4005695..4006297	-	200	148663420	-	MRA_3596	-	TetR family transcriptional regulator
3664	 64.86	0	4006646..4008304	+	552	148663421	-	MRA_3597	-	PPE family protein
3665	 69.20	+1	4008313..4009101	-	262	148663422	-	MRA_3598	-	short chain dehydrogenase
3666	 68.22	0	4009098..4010255	-	385	148663423	fadE30	MRA_3599	-	acyl-CoA dehydrogenase FadE30
3667	 69.69	+1	4010303..4011826	+	507	148663424	fadD3	MRA_3600	-	acyl-CoA synthetase
3668	 66.93	0	4011827..4012960	+	377	148663425	fadE31	MRA_3601	-	acyl-CoA dehydrogenase FadE31
3669	 69.69	+1	4012957..4013916	+	319	148663426	fadE32	MRA_3602	-	acyl-CoA dehydrogenase FadE32
3670	 69.07	+1	4013913..4014869	+	318	148663427	fadE33	MRA_3603	-	acyl-CoA dehydrogenase FadE33
3671	 66.50	0	4014866..4016032	+	388	148663428	aspB	MRA_3604	-	aspartate aminotransferase
3672	 64.91	0	4015997..4016848	-	283	148663429	nat	MRA_3605	-	arylamine N-acetyltransferase
3673	 64.79	0	4016833..4017099	-	88	148663430	-	MRA_3605A	-	hypothetical protein
3674	 63.65	0	4017385..4017948	-	187	148663431	-	MRA_3606	-	putative oxidoreductase
3675	 65.12	0	4017963..4018865	-	300	148663432	bphC	MRA_3607	-	extradiol ring-cleavage dioxygenase
3676	 64.38	0	4018862..4019737	-	291	148663433	bphD	MRA_3608	-	2-hydroxy-6-phenylhexa-2,4-dienoic acid hydrolase
3677	 65.40	0	4019752..4020936	-	394	148663434	-	MRA_3609	-	putative hydroxylase
3678	 66.85	0	4021083..4022159	+	358	148663435	hmp	MRA_3610	-	hemoglobine-related protein Hmp
3679	 64.60	0	4022177..4022707	+	176	148663436	-	MRA_3611	-	hypothetical protein
3680	 68.96	+1	4022743..4024878	-	711	148663437	fadE34	MRA_3612	-	acyl-CoA dehydrogenase FadE34
3681	 65.67	0	4025150..4025749	+	199	148663438	-	MRA_3613	-	TetR family transcriptional regulator
3682	 67.69	0	4025755..4026834	-	359	148663439	-	MRA_3614	-	LacI family transcriptional regulator
3683	 61.20	-1	4027024..4027737	+	237	148663440	lppH	MRA_3615	-	putative lipoprotein LppH
3684	 67.24	0	4027928..4028794	+	288	148663441	-	MRA_3616	-	hypothetical protein
3685	 69.73	+1	4028808..4030049	+	413	148663442	arsB2	MRA_3617	-	putative arsenical pump integral membrane protein ArsB2
3686	 68.83	+1	4030091..4031059	-	322	148663443	-	MRA_3618	-	putative tRNA/rRNA methyltransferase
3687	 65.89	0	4031060..4032469	-	469	148663444	cysS	MRA_3619	-	cysteinyl-tRNA synthetase
65.43	MEAN

3.37	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.