IslandPathversion 1.0

IslandPath Analysis: Mycobacterium tuberculosis H37Ra



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 65.43 STD DEV: 3.37
Mycobacterium tuberculosis H37Ra, complete genome - 1..4419977
4034 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2932	 68.05	0	3168140..3169513	-	457	148662689	cobB	MRA_2871	-	cobyrinic acid a,c-diamide synthase
2933	 65.22	0	3169513..3170136	-	207	148662690	cobO	MRA_2872	-	cob(I)yrinic acid a,c-diamide adenosyltransferase
2934	 70.48	+1	3170157..3172046	-	629	148662691	-	MRA_2873	-	putative magnesium chelatase
2935	 65.61	0	3172043..3172513	-	156	148662692	-	MRA_2874	-	hypothetical protein
2936	 63.70	0	3172572..3174053	-	493	148662693	mqo	MRA_2875	-	malate:quinone oxidoreductase
2937	 73.71	+2	3174263..3176107	+	614	148662694	-	MRA_2876	-	PE-PGRS family protein
2938	 64.94	0	3176144..3177184	+	346	148662695	-	MRA_2877	-	hypothetical protein
2939	 62.68	0	3177197..3178576	+	459	148662696	mtr	MRA_2878	-	mycothione/glutathione reductase
2940	 63.36	0	3178676..3179794	+	372	148662697	nicT	MRA_2879	-	HoxN/HupN/NixA family nickel transporter
2941	 64.26	0	3179860..3180192	+	110	148662698	-	MRA_2880	-	hypothetical protein
2942	 64.35	0	3180204..3180419	+	71	148662699	-	MRA_2881	-	hypothetical protein
2943	 63.71	0	3180575..3181351	-	258	148662700	-	MRA_2882	-	short chain dehydrogenase
2944	 66.30	0	3181348..3182715	-	455	148662701	aldC	MRA_2883	-	aldehyde dehydrogenase AldC
2945	 68.61	0	3182712..3183638	-	308	148662702	-	MRA_2884	-	putative amidotransferase
2946	 64.34	0	3183619..3184992	-	457	148662703	glnA4	MRA_2885	-	putative glutamine synthetase
2947	 63.29	0	3185152..3186009	-	285	148662704	mapB	MRA_2886	-	methionine aminopeptidase
2948	 67.52	0	3186051..3186635	-	194	148662705	-	MRA_2887	-	hypothetical protein
2949	 63.52	0	3186984..3187364	+	126	148662706	-	MRA_2888	-	hypothetical protein
2950	 66.72	0	3187446..3189257	-	603	148662707	-	MRA_2889	-	putative penicillin-binding lipoprotein
2951	 63.12	0	3189529..3189810	+	93	148662708	-	MRA_2890	-	hypothetical protein
2952	 66.67	0	3189814..3190077	+	87	148662709	-	MRA_2891	-	hypothetical protein
2953	 67.84	0	3190450..3191304	-	284	148662710	-	MRA_2892	-	hypothetical protein
2954	 65.21	0	3191360..3192523	-	387	148662711	ispG	MRA_2893	-	4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase
2955	 64.77	0	3192540..3193754	-	404	148662712	-	MRA_2894	-	putative transmembrane protein
2956	 67.95	0	3193762..3195003	-	413	148662713	dxr	MRA_2895	-	1-deoxy-D-xylulose 5-phosphate reductoisomerase
2957	 65.50	0	3195130..3195387	+	85	148662714	-	MRA_2895A	-	hypothetical protein
2958	 63.74	0	3195374..3195817	+	147	148662715	-	MRA_2896	-	hypothetical protein
2959	 63.50	0	3195897..3196559	+	220	148662716	mpt83	MRA_2897	-	cell surface lipoprotein Mpt83
2960	 67.71	0	3196655..3196846	+	63	148662717	-	MRA_2898	-	hypothetical protein
2961	 62.36	0	3196839..3198926	+	695	148662718	dipZ	MRA_2899	-	putative integral membrane c-type cytochrome biogenesis protein DipZ
2962	 64.26	0	3199022..3199603	+	193	148662719	mpt70	MRA_2900	-	antigen Mpt70
2963	 64.13	0	3199655..3199969	+	104	148662720	-	MRA_2901	-	putative transmembrane protein
2964	 67.59	0	3200000..3200863	-	287	148662721	-	MRA_2902	-	putative mercury resistance transport protein
2965	 62.64	0	3200868..3201389	-	173	148662722	mpt53	MRA_2903	-	soluble secreted antigen Mpt53 precursor
2966	 65.82	0	3201575..3202162	-	195	148662723	-	MRA_2904	-	hypothetical protein
2967	 67.39	0	3201843..3202670	-	275	148662724	-	MRA_2905	-	hypothetical protein
2968	 64.39	0	3202693..3203613	-	306	148662725	cdsA	MRA_2906	-	putative phosphatidate cytidylyltransferase
2969	 57.35	-2	3203636..3204193	-	185	148662726	frr	MRA_2907	-	ribosome recycling factor
2970	 65.01	0	3204365..3205150	-	261	148662727	pyrH	MRA_2908	-	uridylate kinase
2971	 63.11	0	3205385..3206143	+	252	148662728	-	MRA_2909	-	putative transcriptional regulatory protein
2972	 65.44	0	3206158..3207540	-	460	148662729	-	MRA_2910	-	IS1539 transposase
2973	 64.41	0	3207537..3208424	-	295	148662730	-	MRA_2911	-	IS1539 resolvase
2974	 66.67	0	3208423..3208842	+	139	148662731	-	MRA_2912	-	putative transcriptional regulatory protein
2975	 66.95	0	3208856..3210277	-	473	148662732	amiC	MRA_2913	-	amidase
2976	 67.03	0	3210284..3211099	-	271	148662733	tsf	MRA_2914	-	elongation factor Ts
2977	 63.77	0	3211111..3211974	-	287	148662734	rpsB	MRA_2915	-	30S ribosomal protein S2
2978	 71.47	+1	3212258..3213007	+	249	148662735	-	MRA_2916	-	hypothetical protein
2979	 67.89	0	3212786..3214012	-	408	148662736	-	MRA_2917	-	PPE family protein
2980	 69.43	+1	3214412..3215389	+	325	148662737	-	MRA_2918	-	putative oxidoreductase
2981	 70.79	+1	3215386..3216282	-	298	148662738	xerC	MRA_2919	-	site-specific tyrosine recombinase XerC
2982	 67.61	0	3216373..3217224	-	283	148662739	viuB	MRA_2920	-	siderophore utilization protein
2983	 71.71	+1	3217257..3218426	-	389	148662740	-	MRA_2921	-	hypothetical protein
2984	 68.98	+1	3218423..3219934	-	503	148662741	-	MRA_2922	-	putative magnesium chelatase
2985	 67.44	0	3219934..3220320	-	128	148662742	-	MRA_2923	-	hypothetical protein
2986	 64.98	0	3220568..3221398	-	276	148662743	fdhD	MRA_2924	-	formate dehydrogenase accessory protein
2987	 65.47	0	3221398..3223737	-	779	148662744	fdhF	MRA_2925	-	putative formate dehydrogenease subunit alpha
2988	 56.21	-2	3223795..3224100	-	101	148662745	-	MRA_2926	-	hypothetical protein
2989	 68.18	0	3224154..3224948	-	264	148662746	rnhB	MRA_2927	-	ribonuclease HII
2990	 65.08	0	3224962..3225846	-	294	148662747	lepB	MRA_2928	-	signal peptidase I
2991	 63.45	0	3225904..3226245	-	113	148662748	rplS	MRA_2929	-	50S ribosomal protein L19
2992	 66.14	0	3226620..3227564	+	314	148662749	lppW	MRA_2930	-	putative alanine rich lipoprotein LppW
2993	 65.80	0	3227657..3228349	-	230	148662750	trmD	MRA_2931	-	tRNA (guanine-N(1)-)-methyltransferase
2994	 62.90	0	3228353..3228883	-	176	148662751	rimM	MRA_2932	-	16S rRNA-processing protein
2995	 63.37	0	3228897..3229139	-	80	148662752	-	MRA_2933	-	hypothetical protein
2996	 65.44	0	3229147..3229635	-	162	148662753	rpsP	MRA_2934	-	30S ribosomal protein S16
2997	 58.56	-2	3229819..3230262	-	147	148662754	-	MRA_2935	-	hypothetical protein
2998	 69.06	+1	3230331..3231206	+	291	148662755	dacB2	MRA_2936	-	putative D-alanyl-D-alanine carboxypeptidase DacB2
2999	 64.46	0	3231266..3231853	-	195	148662756	-	MRA_2937	-	TetR family transcriptional regulator
3000	 64.81	0	3231855..3233690	-	611	148662757	-	MRA_2938	-	putative D-amino acid aminohydrolase
3001	 67.29	0	3233759..3235516	-	585	148662758	pknI	MRA_2939	-	serine/threonine protein kinase
3002	 68.19	0	3235560..3236672	-	370	148662759	-	MRA_2940	-	hypothetical protein
3003	 66.29	0	3236700..3238277	-	525	148662760	ffh	MRA_2941	-	signal recognition particle protein Ffh
3004	 67.52	0	3238355..3240235	+	626	148662761	-	MRA_2942	-	hypothetical protein
3005	 66.67	0	3240246..3242672	-	808	148662762	glnD	MRA_2943	-	PII uridylyl-transferase
3006	 61.06	-1	3242730..3243068	-	112	148662763	glnB	MRA_2944	-	putative nitrogen regulatory protein P-II GlnB
3007	 63.18	0	3243065..3244498	-	477	148662764	amt	MRA_2945	-	ammonium-transport integral membrane protein Amt
3008	 68.48	0	3244863..3246131	-	422	148662765	ftsY	MRA_2946	-	signal recognition particle FtsY
3009	 67.25	0	3246181..3249798	-	1205	148662766	smc	MRA_2947	-	putative chromosome segregation SMC protein
3010	 70.57	+1	3249810..3250091	-	93	148662767	acyP	MRA_2948	-	acylphosphatase
3011	 67.87	0	3250078..3250491	-	137	148662768	-	MRA_2949	-	hypothetical protein
3012	 67.13	0	3250593..3251462	-	289	148662769	fpg	MRA_2950	-	formamidopyrimidine-DNA glycosylase
3013	 66.67	0	3251507..3251698	-	63	148662770	-	MRA_2951	-	hypothetical protein
3014	 64.18	0	3251821..3252543	-	240	148662771	rnc	MRA_2952	-	ribonuclease III
3015	 65.54	0	3252540..3253163	-	207	148662772	-	MRA_2953	-	hypothetical protein
3016	 63.82	0	3253214..3253951	-	245	148662773	-	MRA_2954	-	hypothetical protein
3017	 54.45	-2	3254190..3254975	+	261	148662774	tesA	MRA_2955	-	thioesterase
3018	 63.46	0	3254962..3255273	+	103	148662775	-	MRA_2955A	-	hypothetical protein
3019	 60.90	-1	3255689..3257440	+	583	148662776	fadD26	MRA_2956	-	acyl-CoA synthetase
3020	 65.42	0	3257437..3263067	+	1876	148662777	ppsA	MRA_2957	-	phenolpthiocerol synthesis type-I polyketide synthase PpsA
3021	 65.37	0	3263064..3267680	+	1538	148662778	ppsB	MRA_2958	-	phenolpthiocerol synthesis type-I polyketide synthase PpsB
3022	 66.15	0	3267677..3274243	+	2188	148662779	ppsC	MRA_2959	-	phenolpthiocerol synthesis type-I polyketide synthase PpsC
3023	 66.92	0	3274240..3279723	+	1827	148662780	ppsD	MRA_2960	-	phenolpthiocerol synthesis type-I polyketide synthase PpsD
3024	 65.64	0	3279729..3284195	+	1488	148662781	ppsE	MRA_2961	-	phenolpthiocerol synthesis type-I polyketide synthase PpsD
3025	 62.85	0	3284206..3285201	+	331	148662782	drrA	MRA_2962	-	daunorubicin-dim ABC transporter ATP-binding protein DrrA
3026	 59.43	-1	3285198..3286067	+	289	148662783	drrB	MRA_2963	-	daunorubicin-dim ABC transporter permease protein DrrB
3027	 57.52	-2	3286064..3286894	+	276	148662784	drrC	MRA_2964	-	daunorubicin-dim ABC transporter permease protein DrrC
3028	 60.44	-1	3286941..3288209	+	422	148662785	papA5	MRA_2965	-	acyltransferase PapA5
3029	 66.49	0	3288372..3294707	-	2111	148662786	mas	MRA_2966	-	multifunctional mycocerosic acid synthase membrane-associated Mas
3030	 59.44	-1	3295327..3297069	+	580	148662787	fadD28	MRA_2967	-	acyl-CoA synthetase
3031	 66.02	0	3297062..3299824	+	920	148662788	mmpL7	MRA_2968	-	transmembrane transport protein MmpL7
65.43	MEAN

3.37	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.