IslandPathversion 1.0

IslandPath Analysis: Mycobacterium tuberculosis H37Ra



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 65.43 STD DEV: 3.37
Mycobacterium tuberculosis H37Ra, complete genome - 1..4419977
4034 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2890	 68.15	0	3124835..3125239	+	134	148662647	-	MRA_2829	-	hypothetical protein
2891	 61.46	-1	3125236..3125427	+	63	148662648	-	MRA_2830	-	hypothetical protein
2892	 64.33	0	3125626..3126780	+	384	148662649	-	MRA_2831	-	hypothetical protein
2893	 50.00	-2	3127014..3127271	+	85	148662650	-	MRA_2832	-	hypothetical protein
2894	 61.86	-1	3127376..3127687	+	103	148662651	-	MRA_2833	-	hypothetical protein
2895	 62.58	0	3127709..3128026	-	105	148662652	-	MRA_2834	-	putative transposase
2896	 72.41	+2	3128107..3128715	+	202	148662653	-	MRA_2835	-	hypothetical protein
2897	 68.16	0	3128786..3130195	+	469	148662654	-	MRA_2836	-	putative transposase
2898	 67.53	0	3130192..3131004	+	270	148662655	-	MRA_2837	-	hypothetical protein
2899	 63.84	0	3132534..3133418	-	294	148662656	-	MRA_2838	-	IS6110 transposase
2900	 65.75	0	3133469..3133795	-	108	148662657	-	MRA_2839	-	IS6110 hypothetical protein
2901	 55.26	-2	3135616..3135957	-	113	148662658	-	MRA_2840	-	hypothetical protein
2902	 60.87	-1	3135958..3136974	-	338	148662659	-	MRA_2841	-	hypothetical protein
2903	 59.62	-1	3136987..3138135	-	382	148662660	-	MRA_2842	-	hypothetical protein
2904	 59.40	-1	3138231..3139358	-	375	148662661	-	MRA_2843	-	hypothetical protein
2905	 63.15	0	3139355..3140263	-	302	148662662	-	MRA_2844	-	hypothetical protein
2906	 61.32	-1	3140244..3140954	-	236	148662663	-	MRA_2845	-	hypothetical protein
2907	 58.67	-2	3140964..3141338	-	124	148662664	-	MRA_2846	-	hypothetical protein
2908	 61.48	-1	3141335..3143764	-	809	148662665	-	MRA_2847	-	hypothetical protein
2909	 62.96	0	3143761..3144705	-	314	148662666	-	MRA_2848	-	hypothetical protein
2910	 70.68	+1	3144883..3145530	-	215	148662667	-	MRA_2849	-	hypothetical protein
2911	 66.78	0	3145701..3146585	-	294	148662668	-	MRA_2850	-	hypothetical protein
2912	 68.81	+1	3146588..3147475	-	295	148662669	-	MRA_2851	-	hypothetical protein
2913	 72.34	+2	3147780..3148325	-	181	148662670	-	MRA_2852	-	hypothetical protein
2914	 69.70	+1	3148322..3149047	-	241	148662671	-	MRA_2853	-	hypothetical protein
2915	 70.53	+1	3149263..3150012	+	249	148662672	echA16	MRA_2854	-	enoyl-CoA hydratase
2916	 68.05	0	3150091..3151173	-	360	148662673	ugpC	MRA_2855	-	sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC
2917	 64.53	0	3151166..3152476	-	436	148662674	ugpB	MRA_2856	-	sn-glycerol-3-phosphate ABC transporter substrate-binding protein UspB
2918	 62.32	0	3152479..3153306	-	275	148662675	ugpE	MRA_2857	-	sn-glycerol-3-phosphate ABC transporter permease protein UgpE
2919	 62.61	0	3153303..3154214	-	303	148662676	ugpA	MRA_2858	-	sn-glycerol-3-phosphate ABC transporter permease protein UgpA
2920	 68.86	+1	3154301..3155620	-	439	148662677	dinF	MRA_2859	-	putative DNA-damage-inducible protein F
2921	 66.27	0	3155627..3156637	-	336	148662678	-	MRA_2860	-	hypothetical protein
2922	 68.12	0	3156612..3157163	-	183	148662679	rbfA	MRA_2861	-	ribosome-binding factor A
2923	 69.03	+1	3157163..3159865	-	900	148662680	infB	MRA_2862	-	translation initiation factor IF-2
2924	 64.00	0	3159951..3160250	-	99	148662681	-	MRA_2863	-	hypothetical protein
2925	 65.23	0	3160377..3161420	-	347	148662682	nusA	MRA_2864	-	transcription elongation factor NusA
2926	 65.76	0	3161417..3161968	-	183	148662683	-	MRA_2865	-	hypothetical protein
2927	 69.41	+1	3162163..3162708	+	181	148662684	-	MRA_2866	-	putative alanine rich transmembrane protein
2928	 69.12	+1	3162705..3163193	+	162	148662685	-	MRA_2867	-	hypothetical protein
2929	 65.87	0	3163194..3164942	-	582	148662686	proS	MRA_2868	-	prolyl-tRNA synthetase
2930	 64.91	0	3165031..3166623	-	530	148662687	efpA	MRA_2869	-	efflux protein
2931	 66.26	0	3166646..3167863	-	405	148662688	cysG	MRA_2870	-	uroporphyrinogen III methyltransferase
2932	 68.05	0	3168140..3169513	-	457	148662689	cobB	MRA_2871	-	cobyrinic acid a,c-diamide synthase
2933	 65.22	0	3169513..3170136	-	207	148662690	cobO	MRA_2872	-	cob(I)yrinic acid a,c-diamide adenosyltransferase
2934	 70.48	+1	3170157..3172046	-	629	148662691	-	MRA_2873	-	putative magnesium chelatase
2935	 65.61	0	3172043..3172513	-	156	148662692	-	MRA_2874	-	hypothetical protein
2936	 63.70	0	3172572..3174053	-	493	148662693	mqo	MRA_2875	-	malate:quinone oxidoreductase
2937	 73.71	+2	3174263..3176107	+	614	148662694	-	MRA_2876	-	PE-PGRS family protein
2938	 64.94	0	3176144..3177184	+	346	148662695	-	MRA_2877	-	hypothetical protein
2939	 62.68	0	3177197..3178576	+	459	148662696	mtr	MRA_2878	-	mycothione/glutathione reductase
2940	 63.36	0	3178676..3179794	+	372	148662697	nicT	MRA_2879	-	HoxN/HupN/NixA family nickel transporter
2941	 64.26	0	3179860..3180192	+	110	148662698	-	MRA_2880	-	hypothetical protein
2942	 64.35	0	3180204..3180419	+	71	148662699	-	MRA_2881	-	hypothetical protein
2943	 63.71	0	3180575..3181351	-	258	148662700	-	MRA_2882	-	short chain dehydrogenase
2944	 66.30	0	3181348..3182715	-	455	148662701	aldC	MRA_2883	-	aldehyde dehydrogenase AldC
2945	 68.61	0	3182712..3183638	-	308	148662702	-	MRA_2884	-	putative amidotransferase
2946	 64.34	0	3183619..3184992	-	457	148662703	glnA4	MRA_2885	-	putative glutamine synthetase
2947	 63.29	0	3185152..3186009	-	285	148662704	mapB	MRA_2886	-	methionine aminopeptidase
2948	 67.52	0	3186051..3186635	-	194	148662705	-	MRA_2887	-	hypothetical protein
2949	 63.52	0	3186984..3187364	+	126	148662706	-	MRA_2888	-	hypothetical protein
2950	 66.72	0	3187446..3189257	-	603	148662707	-	MRA_2889	-	putative penicillin-binding lipoprotein
2951	 63.12	0	3189529..3189810	+	93	148662708	-	MRA_2890	-	hypothetical protein
2952	 66.67	0	3189814..3190077	+	87	148662709	-	MRA_2891	-	hypothetical protein
2953	 67.84	0	3190450..3191304	-	284	148662710	-	MRA_2892	-	hypothetical protein
2954	 65.21	0	3191360..3192523	-	387	148662711	ispG	MRA_2893	-	4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase
2955	 64.77	0	3192540..3193754	-	404	148662712	-	MRA_2894	-	putative transmembrane protein
2956	 67.95	0	3193762..3195003	-	413	148662713	dxr	MRA_2895	-	1-deoxy-D-xylulose 5-phosphate reductoisomerase
2957	 65.50	0	3195130..3195387	+	85	148662714	-	MRA_2895A	-	hypothetical protein
2958	 63.74	0	3195374..3195817	+	147	148662715	-	MRA_2896	-	hypothetical protein
2959	 63.50	0	3195897..3196559	+	220	148662716	mpt83	MRA_2897	-	cell surface lipoprotein Mpt83
2960	 67.71	0	3196655..3196846	+	63	148662717	-	MRA_2898	-	hypothetical protein
2961	 62.36	0	3196839..3198926	+	695	148662718	dipZ	MRA_2899	-	putative integral membrane c-type cytochrome biogenesis protein DipZ
2962	 64.26	0	3199022..3199603	+	193	148662719	mpt70	MRA_2900	-	antigen Mpt70
2963	 64.13	0	3199655..3199969	+	104	148662720	-	MRA_2901	-	putative transmembrane protein
2964	 67.59	0	3200000..3200863	-	287	148662721	-	MRA_2902	-	putative mercury resistance transport protein
2965	 62.64	0	3200868..3201389	-	173	148662722	mpt53	MRA_2903	-	soluble secreted antigen Mpt53 precursor
2966	 65.82	0	3201575..3202162	-	195	148662723	-	MRA_2904	-	hypothetical protein
2967	 67.39	0	3201843..3202670	-	275	148662724	-	MRA_2905	-	hypothetical protein
2968	 64.39	0	3202693..3203613	-	306	148662725	cdsA	MRA_2906	-	putative phosphatidate cytidylyltransferase
2969	 57.35	-2	3203636..3204193	-	185	148662726	frr	MRA_2907	-	ribosome recycling factor
2970	 65.01	0	3204365..3205150	-	261	148662727	pyrH	MRA_2908	-	uridylate kinase
2971	 63.11	0	3205385..3206143	+	252	148662728	-	MRA_2909	-	putative transcriptional regulatory protein
2972	 65.44	0	3206158..3207540	-	460	148662729	-	MRA_2910	-	IS1539 transposase
2973	 64.41	0	3207537..3208424	-	295	148662730	-	MRA_2911	-	IS1539 resolvase
2974	 66.67	0	3208423..3208842	+	139	148662731	-	MRA_2912	-	putative transcriptional regulatory protein
2975	 66.95	0	3208856..3210277	-	473	148662732	amiC	MRA_2913	-	amidase
2976	 67.03	0	3210284..3211099	-	271	148662733	tsf	MRA_2914	-	elongation factor Ts
2977	 63.77	0	3211111..3211974	-	287	148662734	rpsB	MRA_2915	-	30S ribosomal protein S2
2978	 71.47	+1	3212258..3213007	+	249	148662735	-	MRA_2916	-	hypothetical protein
2979	 67.89	0	3212786..3214012	-	408	148662736	-	MRA_2917	-	PPE family protein
2980	 69.43	+1	3214412..3215389	+	325	148662737	-	MRA_2918	-	putative oxidoreductase
2981	 70.79	+1	3215386..3216282	-	298	148662738	xerC	MRA_2919	-	site-specific tyrosine recombinase XerC
2982	 67.61	0	3216373..3217224	-	283	148662739	viuB	MRA_2920	-	siderophore utilization protein
2983	 71.71	+1	3217257..3218426	-	389	148662740	-	MRA_2921	-	hypothetical protein
2984	 68.98	+1	3218423..3219934	-	503	148662741	-	MRA_2922	-	putative magnesium chelatase
2985	 67.44	0	3219934..3220320	-	128	148662742	-	MRA_2923	-	hypothetical protein
2986	 64.98	0	3220568..3221398	-	276	148662743	fdhD	MRA_2924	-	formate dehydrogenase accessory protein
2987	 65.47	0	3221398..3223737	-	779	148662744	fdhF	MRA_2925	-	putative formate dehydrogenease subunit alpha
2988	 56.21	-2	3223795..3224100	-	101	148662745	-	MRA_2926	-	hypothetical protein
2989	 68.18	0	3224154..3224948	-	264	148662746	rnhB	MRA_2927	-	ribonuclease HII
65.43	MEAN

3.37	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.