IslandPathversion 1.0

IslandPath Analysis: Mycobacterium tuberculosis H37Ra



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 65.43 STD DEV: 3.37
Mycobacterium tuberculosis H37Ra, complete genome - 1..4419977
4034 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2708	 65.99	0	2963290..2964471	-	393	148662465	-	MRA_2653	-	putative alanine and leucine rich transmembrane protein
2709	 61.81	-1	2964530..2964961	-	143	148662466	-	MRA_2654	-	hypothetical protein
2710	 62.08	0	2965475..2966716	-	413	148662467	-	MRA_2655	-	hypothetical protein
2711	 63.64	0	2967026..2967388	+	120	148662468	-	MRA_2656	-	hypothetical protein
2712	 64.09	0	2967735..2968859	+	374	148662469	-	MRA_2657	-	hypothetical protein
2713	 65.00	0	2968861..2969400	+	179	148662470	-	MRA_2658	-	hypothetical protein
2714	 65.67	0	2969540..2970838	+	432	148662471	-	MRA_2659	-	hypothetical protein
2715	 60.64	-1	2970877..2971158	-	93	148662472	-	MRA_2660	-	hypothetical protein
2716	 60.91	-1	2971303..2971788	-	161	148662473	-	MRA_2661	-	hypothetical protein
2717	 64.71	0	2971815..2972069	-	84	148662474	-	MRA_2662	-	hypothetical protein
2718	 74.79	+2	2972073..2974373	-	766	148662475	-	MRA_2663	-	PE-PGRS family protein
2719	 64.20	0	2974438..2974680	+	80	148662476	-	MRA_2664	-	hypothetical protein
2720	 63.42	0	2974681..2975358	+	225	148662477	-	MRA_2665	-	hypothetical protein
2721	 67.58	0	2975554..2976210	+	218	148662478	dedA	MRA_2666	-	DedA family protein
2722	 68.23	0	2976373..2976819	+	148	148662479	-	MRA_2667	-	hypothetical protein
2723	 66.07	0	2976994..2977326	-	110	148662480	-	MRA_2668	-	hypothetical protein
2724	 68.06	0	2977446..2977805	-	119	148662481	-	MRA_2669	-	transcription regulator ArsR
2725	 63.83	0	2977907..2978365	+	152	148662482	cadI	MRA_2670	-	cadmium inducible protein CadI
2726	 67.72	0	2978501..2978881	+	126	148662483	-	MRA_2671	-	transcription regulator ArsR
2727	 65.93	0	2978878..2980374	+	498	148662484	arsC	MRA_2672	-	arsenical resistance protein/arsenate reductase
2728	 62.65	0	2980378..2980800	+	140	148662485	-	MRA_2673	-	hypothetical protein
2729	 71.99	+1	2982091..2982522	+	143	148662486	-	MRA_2674	-	hypothetical protein
2730	 67.47	0	2982519..2983517	+	332	148662487	-	MRA_2675	-	phage integrase family protein
2731	 63.41	0	2983627..2983995	+	122	148662488	-	MRA_2676	-	hypothetical protein
2732	 65.75	0	2984128..2984454	+	108	148662489	-	MRA_2677	-	IS6110 hypothetical protein
2733	 63.84	0	2984505..2985389	+	294	148662490	-	MRA_2678	-	IS6110 transposase
2734	 63.77	0	2985386..2985592	+	68	148662491	-	MRA_2679	-	hypothetical protein
2735	 67.57	0	2985763..2987202	-	479	148662492	-	MRA_2680	-	putative phiRv2 prophage protein
2736	 65.92	0	2987210..2987743	-	177	148662493	-	MRA_2681	-	putative phage prohead protease
2737	 66.51	0	2987896..2988522	-	208	148662494	-	MRA_2682	-	putative phiRv2 prophage protein
2738	 65.43	0	2988554..2988877	-	107	148662495	-	MRA_2683	-	putative phiRv2 prophage protein
2739	 77.64	+2	2988957..2989202	-	81	148662496	-	MRA_2684	-	putative phiRv2 prophage protein
2740	 66.74	0	2989199..2990626	-	475	148662497	-	MRA_2685	-	putative phiRv2 prophage protein
2741	 71.76	+1	2990628..2991020	-	130	148662498	-	MRA_2686	-	putative phiRv2 prophage protein
2742	 68.20	0	2991017..2991277	-	86	148662499	-	MRA_2687	-	putative phiRv2 prophage protein
2743	 59.50	-1	2991294..2991656	-	120	148662500	-	MRA_2688	-	hypothetical protein
2744	 64.89	0	2991659..2992786	-	375	148662501	-	MRA_2689	-	integrase
2745	 64.96	0	2992931..2993398	-	155	148662502	-	MRA_2690	-	hypothetical protein
2746	 64.10	0	2993450..2993722	+	90	148662503	-	MRA_2690A	-	hypothetical protein
2747	 60.68	-1	2993821..2994054	+	77	148662504	-	MRA_2691	-	hypothetical protein
2748	 67.45	0	2994065..2994319	+	84	148662505	-	MRA_2692	-	hypothetical protein
2749	 70.57	+1	2994667..2994948	+	93	148662506	-	MRA_2693	-	hypothetical protein
2750	 66.92	0	2995039..2995842	+	267	148662507	-	MRA_2694	-	truncated IS1081 transposase
2751	 67.59	0	2995864..2996622	+	252	148662508	clpC2	MRA_2695	-	putative ATP-dependent protease ATP-binding subunit ClpC2
2752	 68.39	0	2996701..2997222	+	173	148662509	-	MRA_2696	-	putative alanine and valine rich exported protein
2753	 64.76	0	2997251..2997721	+	156	148662510	-	MRA_2697	-	hypothetical protein
2754	 64.95	0	2997699..2998808	-	369	148662511	-	MRA_2698	-	hypothetical protein
2755	 67.18	0	2998807..2999583	+	258	148662512	ribD	MRA_2699	-	hypothetical protein
2756	 67.93	0	2999650..3001236	+	528	148662513	-	MRA_2700	-	putative proteinase
2757	 63.29	0	3001259..3002560	+	433	148662514	-	MRA_2701	-	putative integral membrane protein
2758	 63.26	0	3002674..3003084	+	136	148662515	-	MRA_2702	-	hypothetical protein
2759	 67.07	0	3003152..3003904	-	250	148662516	-	MRA_2703	-	hypothetical protein
2760	 66.24	0	3003901..3004596	-	231	148662517	-	MRA_2704	-	hypothetical protein
2761	 72.33	+2	3004602..3005960	-	452	148662518	hemY	MRA_2705	-	protoporphyrinogen oxidase
2762	 69.46	+1	3005957..3007030	-	357	148662519	hemE	MRA_2706	-	uroporphyrinogen decarboxylase
2763	 68.11	0	3007083..3007913	+	276	148662520	echA15	MRA_2707	-	enoyl-CoA hydratase
2764	 69.04	+1	3008073..3008705	+	210	148662521	-	MRA_2708	-	hypothetical protein
2765	 68.64	0	3008707..3010023	+	438	148662522	-	MRA_2709	-	putative ribonuclease D
2766	 67.24	0	3010020..3011936	-	638	148662523	dxs1	MRA_2710	-	1-deoxy-D-xylulose-5-phosphate synthase
2767	 62.65	0	3012080..3012577	+	165	148662524	-	MRA_2711	-	hypothetical protein
2768	 62.87	0	3012582..3013871	+	429	148662525	arsA	MRA_2712	-	putative arsenic-transport integral membrane protein ArsA
2769	 64.10	0	3013951..3015237	+	428	148662526	arsB1	MRA_2713	-	putative arsenic-transport integral membrane protein ArsB1
2770	 63.90	0	3015248..3016006	-	252	148662527	-	MRA_2714	-	antibiotic ABC transporter permease protein
2771	 64.43	0	3016003..3016716	-	237	148662528	-	MRA_2715	-	antibiotic ABC transporter permease protein
2772	 67.22	0	3016713..3017618	-	301	148662529	-	MRA_2716	-	antibiotic ABC transporter ATP-binding protein
2773	 67.90	0	3017813..3019030	-	405	148662530	-	MRA_2717	-	hypothetical protein
2774	 63.53	0	3019204..3021177	-	657	148662531	-	MRA_2718	-	putative alanine,valine and leucine rich integral membrane protein
2775	 65.50	0	3021312..3021995	+	227	148662532	ceoB	MRA_2719	-	trk system potassium uptake protein CeoB
2776	 66.37	0	3021992..3022654	+	220	148662533	ceoC	MRA_2720	-	putative potassium uptake protein
2777	 66.22	0	3022665..3023336	-	223	148662534	-	MRA_2721	-	putative alanine and leucine rich integral membrane protein
2778	 63.69	0	3023367..3023735	-	122	148662535	-	MRA_2722	-	hypothetical protein
2779	 71.75	+1	3023884..3024591	+	235	148662536	-	MRA_2723	-	hypothetical protein
2780	 68.59	0	3024797..3025576	-	259	148662537	-	MRA_2724	-	hypothetical protein
2781	 68.17	0	3025651..3026115	-	154	148662538	dut	MRA_2725	-	deoxyuridine 5'-triphosphate nucleotidohydrolase
2782	 65.84	0	3026141..3026626	+	161	148662539	-	MRA_2726	-	putative alanine rich transmembrane protein
2783	 61.72	-1	3026631..3026933	-	100	148662540	-	MRA_2727	-	hypothetical protein
2784	 67.13	0	3027171..3027821	+	216	148662541	-	MRA_2728	-	putative alanine rich secreted protein
2785	 68.27	0	3027831..3028703	-	290	148662542	suhB	MRA_2729	-	putative extragenic suppressor protein SuhB
2786	 64.29	0	3028826..3029623	+	265	148662543	ppgK	MRA_2730	-	polyphosphate glucokinase
2787	 66.23	0	3029803..3031389	+	528	148662544	sigA	MRA_2731	-	RNA polymerase sigma factor
2788	 65.73	0	3031426..3031854	+	142	148662545	-	MRA_2732	-	hypothetical protein
2789	 65.90	0	3031782..3032171	-	129	148662546	-	MRA_2733	-	hypothetical protein
2790	 63.18	0	3032168..3032425	-	85	148662547	-	MRA_2734	-	hypothetical protein
2791	 62.56	0	3032541..3033515	+	324	148662548	-	MRA_2735	-	putative alanine and leucine rich transmembrane protein
2792	 60.24	-1	3033516..3033764	-	82	148662549	-	MRA_2736	-	hypothetical protein
2793	 66.22	0	3033807..3034253	+	148	148662550	-	MRA_2737	-	putative transmembrane protein
2794	 63.58	0	3034429..3035400	+	323	148662551	sigB	MRA_2738	-	RNA polymerase sigma factor SigB
2795	 66.52	0	3035533..3036225	+	230	148662552	ideR	MRA_2739	-	iron-dependent repressor IdeR
2796	 67.52	0	3036238..3037296	-	352	148662553	-	MRA_2740	-	hypothetical protein
2797	 63.54	0	3037409..3038815	+	468	148662554	sthA	MRA_2741	-	soluble pyridine nucleotide transhydrogenase
2798	 63.18	0	3039033..3040007	+	324	148662555	-	MRA_2742	-	hypothetical protein
2799	 63.74	0	3040066..3041091	+	341	148662556	-	MRA_2743	-	putative hydrolase
2800	 63.76	0	3041140..3041826	+	228	148662557	-	MRA_2744	-	hypothetical protein
2801	 62.42	0	3041835..3042329	-	164	148662558	-	MRA_2745	-	hypothetical protein
2802	 64.52	0	3042381..3042845	-	154	148662559	-	MRA_2746	-	transcriptional regulator NrdR
2803	 70.88	+1	3043008..3043505	-	165	148662560	-	MRA_2747	-	hypothetical protein
2804	 66.67	0	3043813..3044466	+	217	148662561	lexA	MRA_2748	-	LexA repressor
2805	 65.24	0	3044488..3046587	-	699	148662562	-	MRA_2749	-	putative alanine and glycine rich transmembrane protein
2806	 62.25	0	3046603..3046851	+	82	148662563	-	MRA_2749A	-	hypothetical protein
2807	 59.88	-1	3046877..3048070	+	397	148662564	-	MRA_2750	-	putative integral membrane protein
65.43	MEAN

3.37	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.