IslandPathversion 1.0

IslandPath Analysis: Mycobacterium tuberculosis H37Ra



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 65.43 STD DEV: 3.37
Mycobacterium tuberculosis H37Ra, complete genome - 1..4419977
4034 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
213	 65.29	0	245846..248680	-	944	148659970	mmpL3	MRA_0214	-	putative transmembrane transport protein MmpL3
214	 64.61	0	248746..249474	-	242	148659971	-	MRA_0215	-	hypothetical protein
215	 64.77	0	249477..250268	-	263	148659972	trmB	MRA_0216	-	tRNA (guanine-N(7))-methyltransferase
216	 70.17	+1	250400..251485	+	361	148659973	-	MRA_0217	-	hypothetical protein
217	 69.44	+1	251482..252960	+	492	148659974	-	MRA_0218	-	hypothetical protein
218	 64.09	0	253144..254964	+	606	148659975	pckA	MRA_0219	-	phosphoenolpyruvate carboxykinase
219	 65.64	0	255031..256002	-	323	148659976	nadR	MRA_0220	-	putative transcriptional regulatory protein NadR
220	 61.87	-1	255999..257312	-	437	148659977	-	MRA_0221	-	putative methyltransferase
221	 63.38	0	257426..259039	+	537	148659978	fadD4	MRA_0222	-	acyl-CoA synthetase
222	 65.08	0	259145..260218	-	357	148659979	fadE3	MRA_0223	-	acyl-CoA dehydrogenase FadE3
223	 66.07	0	260275..261288	+	337	148659980	-	MRA_0224	-	hypothetical protein
224	 67.22	0	261285..262193	-	302	148659981	lipW	MRA_0225	-	putative esterase LipW
225	 67.12	0	262286..263614	+	442	148659982	-	MRA_0226	-	putative transmembrane protein
226	 66.48	0	263616..264164	+	182	148659983	-	MRA_0227	-	putative transmembrane protein
227	 65.68	0	264174..265385	+	403	148659984	lipC	MRA_0228	-	esterase LipC
228	 62.70	0	265429..266838	+	469	148659985	-	MRA_0229	-	hypothetical protein
229	 65.15	0	266869..267657	+	262	148659986	echA1	MRA_0230	-	enoyl-CoA hydratase
230	 64.07	0	267663..269126	-	487	148659987	-	MRA_0231	-	aldehyde dehydrogenase
231	 66.93	0	269225..269989	-	254	148659988	-	MRA_0232	-	putative methyltransferase
232	 66.32	0	270025..271179	+	384	148659989	-	MRA_0233	-	glycosyltransferase
233	 69.50	+1	271196..272926	-	576	148659990	-	MRA_0234	-	putative transmembrane protein
234	 65.32	0	272936..274201	-	421	148659991	-	MRA_0235	-	hypothetical protein
235	 69.20	+1	274417..275640	+	407	148659992	-	MRA_0236	-	putative integral membrane acyltransferase
236	 61.97	-1	275668..276348	-	226	148659993	-	MRA_0237	-	hypothetical protein
237	 65.85	0	276345..277325	-	326	148659994	php	MRA_0238	-	phosphotriesterase
238	 63.56	0	277420..279126	+	568	148659995	fadE4	MRA_0239	-	acyl-CoA dehydrogenase FadE4
239	 67.10	0	279261..279950	+	229	148659996	-	MRA_0240	-	TetR/AcrR-family transcriptional regulator
240	 64.87	0	279947..280891	+	314	148659997	nrdB	MRA_0241	-	ribonucleotide-diphosphate reductase subunit beta
241	 66.80	0	280967..282502	-	511	148659998	gabD1	MRA_0242	-	succinic semialdehyde dehydrogenase
242	 62.73	0	282528..283976	-	482	148659999	-	MRA_0243	-	putative transmembrane protein
243	 71.45	+1	284011..288213	-	1400	148660000	-	MRA_0244	-	putative transmembrane protein
244	 64.94	0	288260..288433	-	57	148660001	-	MRA_0245	-	small secreted protein
245	 68.64	0	288548..289714	+	388	148660002	lpqI	MRA_0246	-	putative lipoprotein LpqI
246	 63.74	0	289790..290404	+	204	148660003	-	MRA_0247	-	TetR family transcriptional regulator
247	 65.38	0	290466..290699	+	77	148660004	-	MRA_0248	-	hypothetical protein
248	 62.79	0	290707..291144	+	145	148660005	-	MRA_0249	-	hypothetical protein
249	 66.31	0	291174..292016	-	280	148660006	-	MRA_0250	-	hypothetical protein
250	 67.99	0	292027..293391	-	454	148660007	fabG	MRA_0251	-	3-ketoacyl-(acyl-carrier-protein) reductase
251	 67.88	0	293533..294855	+	440	148660008	fadA2	MRA_0252	-	acetyl-CoA acetyltransferase
252	 64.27	0	295160..296995	-	611	148660009	fadE5	MRA_0253	-	acyl-CoA dehydrogenase FadE5
253	 64.21	0	297367..297855	+	162	148660010	-	MRA_0254	-	putative oxidoreductase
254	 60.34	-1	298171..299481	+	436	148660011	-	MRA_0255	-	putative integral membrane protein
255	 58.63	-2	299478..300224	-	248	148660012	-	MRA_0256	-	fumarate reductase iron-sulfur subunit
256	 63.83	0	300225..302165	-	646	148660013	sdhA	MRA_0257	-	succinate dehydrogenase flavoprotein subunit
257	 58.39	-2	302196..303017	-	273	148660014	-	MRA_0258	-	putative succinate dehydrogenase
258	 61.90	-1	303097..303390	-	97	148660015	-	MRA_0259	-	hypothetical protein
259	 66.67	0	303535..304014	-	159	148660016	hsp	MRA_0260	-	heat shock protein Hsp
260	 65.61	0	304228..306789	+	853	148660017	nirB	MRA_0261	-	NAD(P)H-dependent nitrite reductase large subunit
261	 64.71	0	306815..307171	+	118	148660018	nirD	MRA_0262	-	putative nitrite reductase
262	 67.24	0	307187..307711	-	174	148660019	cobU	MRA_0263	-	cobinamide kinase/cobinamide phosphate guanylyltransferase
263	 69.49	+1	307736..309220	-	494	148660020	cobQ1	MRA_0264	-	cobyric acid synthase
264	 66.73	0	309239..310801	-	520	148660021	-	MRA_0265	-	PPE family protein
265	 62.13	0	311061..311435	+	124	148660022	-	MRA_0265A	-	hypothetical protein
266	 62.94	0	311656..312111	-	151	148660023	-	MRA_0266	-	hypothetical protein
267	 66.13	0	312136..312879	-	247	148660024	-	MRA_0267	-	hypothetical protein
268	 64.83	0	312876..314021	-	381	148660025	-	MRA_0268	-	bifunctional uroporphyrinogen-III synthetase/response regulator domain-containing protein
269	 63.90	0	314121..315530	-	469	148660026	narK3	MRA_0269	-	integral membrane nitrite extrusion protein NarK3
270	 68.13	0	315671..316216	-	181	148660027	aac	MRA_0270	-	aminoglycoside 2-N-acetyltransferase
271	 68.33	0	316226..317128	-	300	148660028	-	MRA_0271	-	hypothetical protein
272	 69.04	+1	317145..317777	-	210	148660029	-	MRA_0272	-	hypothetical protein
273	 66.26	0	317873..318865	-	330	148660030	-	MRA_0273	-	iron ABC transporter substrate-binding protein
274	 68.71	0	318887..322516	-	1209	148660031	oplA	MRA_0274	-	putative 5-oxoprolinase OplA
275	 65.45	0	322693..324084	+	463	148660032	narU	MRA_0275	-	integral membrane nitrite extrusion protein NarU
276	 61.96	-1	324126..324635	-	169	148660033	-	MRA_0276	-	hypothetical protein
277	 69.26	+1	324700..325893	-	397	148660034	-	MRA_0277	-	hypothetical protein
278	 64.65	0	325929..327611	+	560	148660035	fadD2	MRA_0278	-	acyl-CoA synthetase
279	 66.71	0	327628..329823	-	731	148660036	fadE6	MRA_0279	-	acyl-CoA dehydrogenase FadE6
280	 65.08	0	329937..331070	-	377	148660037	-	MRA_0280	-	hypothetical protein
281	 61.84	-1	331067..331687	-	206	148660038	-	MRA_0281	-	putative transcriptional regulatory protein
282	 62.20	0	331784..332365	+	193	148660039	-	MRA_0282	-	hypothetical protein
283	 68.04	0	332295..333020	-	241	148660040	-	MRA_0283	-	MarR family transcriptional regulator
284	 66.88	0	333110..334030	+	306	148660041	-	MRA_0284	-	hypothetical protein
285	 62.24	0	334070..334498	-	142	148660042	-	MRA_0285	-	hypothetical protein
286	 67.21	0	334522..334704	-	60	148660043	-	MRA_0286	-	hypothetical protein
287	 77.14	+2	334799..337672	-	957	148660044	-	MRA_0287	-	PE-PGRS family protein
288	 77.72	+2	337922..340435	-	837	148660045	-	MRA_0288	-	PE-PGRS family protein
289	 69.34	+1	340726..342336	+	536	148660046	-	MRA_0289	-	PPE family protein
290	 66.89	0	342360..343268	+	302	148660047	-	MRA_0290	-	hypothetical protein
291	 64.82	0	343492..345387	+	631	148660048	-	MRA_0291	-	hypothetical protein
292	 68.03	0	345384..347000	+	538	148660049	-	MRA_0292	-	hypothetical protein
293	 65.72	0	346997..350989	+	1330	148660050	-	MRA_0293	-	hypothetical protein
294	 73.14	+2	350986..351294	+	102	148660051	-	MRA_0294	-	PE family protein
295	 67.80	0	351345..352838	+	497	148660052	-	MRA_0295	-	PPE family protein
296	 65.65	0	352887..353180	+	97	148660053	-	MRA_0296	-	PE family protein
297	 62.54	0	353210..353500	+	96	148660054	esxH	MRA_0297	-	antigen Esxh
298	 66.22	0	353511..354398	+	295	148660055	-	MRA_0298	-	hypothetical protein
299	 68.08	0	354445..355863	+	472	148660056	-	MRA_0299	-	putative transmembrane protein
300	 70.13	+1	355860..357245	+	461	148660057	mycP3	MRA_0300	-	putative membrane-anchored mycosin MycP3
301	 68.67	0	357242..358237	+	331	148660058	-	MRA_0301	-	putative transmembrane protein
302	 63.92	0	358224..359426	-	400	148660059	-	MRA_0302	-	hypothetical protein
303	 65.90	0	359533..360318	+	261	148660060	tam	MRA_0303	-	trans-aconitate methyltransferase
304	 65.92	0	360307..361110	-	267	148660061	-	MRA_0304	-	hypothetical protein
305	 64.66	0	361120..362517	-	465	148660062	-	MRA_0305	-	putative sulfatase
306	 77.03	+2	362696..364471	+	591	148660063	-	MRA_0306	-	PE-PGRS family protein
307	 63.16	0	364614..364841	+	75	148660064	-	MRA_0307	-	hypothetical protein
308	 67.99	0	364838..365140	+	100	148660065	-	MRA_0308	-	hypothetical protein
309	 63.06	0	365188..365409	+	73	148660066	-	MRA_0309	-	hypothetical protein
310	 62.44	0	365406..365831	+	141	148660067	-	MRA_0310	-	hypothetical protein
311	 65.72	0	365967..366599	+	210	148660068	-	MRA_0311	-	TetR/AcrR-family transcriptional regulator
312	 67.33	0	366596..367504	+	302	148660069	-	MRA_0312	-	putative short-chain type dehydrogenase/reductase
65.43	MEAN

3.37	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.