IslandPathversion 1.0

IslandPath Analysis: Mycobacterium tuberculosis H37Ra



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 65.43 STD DEV: 3.37
Mycobacterium tuberculosis H37Ra, complete genome - 1..4419977
4034 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2411	 70.85	+1	2627571..2628812	-	413	148662168	-	MRA_2360	-	PE-PGRS family protein
2412	 64.52	0	2629501..2629920	+	139	148662169	lppQ	MRA_2361	-	putative lipoprotein LppQ
2413	 65.89	0	2630176..2630433	+	85	148662170	-	MRA_2362	-	hypothetical protein
2414	 66.93	0	2630437..2632356	-	639	148662171	dnaG	MRA_2363	-	DNA primase
2415	 66.98	0	2632361..2633656	-	431	148662172	dgt	MRA_2364	-	deoxyguanosinetriphosphate triphosphohydrolase-like protein
2416	 67.83	0	2633725..2635707	+	660	148662173	-	MRA_2365	-	putative transmembrane protein
2417	 63.16	0	2635792..2636076	-	94	148662174	esxO	MRA_2366	-	putative esat-6 like protein EsxO
2418	 62.96	0	2636127..2636423	-	98	148662175	esxP	MRA_2367	-	putative esat-6 like protein EsxP
2419	 67.58	0	2636558..2636884	-	108	148662176	-	MRA_2368	-	hypothetical protein
2420	 61.89	-1	2637076..2638602	-	508	148662177	plcC	MRA_2369	-	phospholipase C 3 PlcC
2421	 62.70	0	2638685..2640223	-	512	148662178	plcB	MRA_2370	-	membrane-associated phospholipase C 2
2422	 62.90	0	2640441..2641979	-	512	148662179	plcA	MRA_2371	-	membrane-associated phospholipase C 1
2423	 63.60	0	2642469..2642696	+	75	148662180	-	MRA_2372	-	hypothetical protein
2424	 69.39	+1	2642827..2644002	-	391	148662181	-	MRA_2373	-	PPE family protein
2425	 60.70	-1	2644204..2644488	-	94	148662182	-	MRA_2374	-	putative esat-6 like protein
2426	 57.41	-2	2644503..2644826	-	107	148662183	-	MRA_2375	-	putative esat-6 like protein
2427	 69.39	+1	2644891..2646066	-	391	148662184	-	MRA_2376	-	PPE family protein
2428	 57.28	-2	2646496..2647560	-	354	148662185	-	MRA_2377	-	PPE family protein
2429	 65.75	0	2647596..2647922	+	108	148662186	-	MRA_2378	-	IS6110 hypothetical protein
2430	 63.84	0	2647973..2648857	+	294	148662187	-	MRA_2379	-	IS6110 transposase
2431	 61.63	-1	2649656..2651503	-	615	148662188	-	MRA_2380	-	PPE family protein
2432	 61.21	-1	2651641..2653032	-	463	148662189	glyS	MRA_2381	-	glycyl-tRNA synthetase
2433	 66.18	0	2653214..2653621	+	135	148662190	-	MRA_2382	-	transcription regulator ArsR
2434	 62.60	0	2653618..2654010	+	130	148662191	furB	MRA_2383	-	ferric uptake regulation protein FurB
2435	 64.34	0	2654118..2654546	-	142	148662192	-	MRA_2384	-	hypothetical protein
2436	 64.42	0	2654546..2655436	-	296	148662193	-	MRA_2385	-	undecaprenyl diphosphate synthase
2437	 68.80	0	2655429..2656226	-	265	148662194	recO	MRA_2386	-	DNA repair protein RecO
2438	 67.97	0	2656288..2657742	+	484	148662195	amiA2	MRA_2387	-	amidase
2439	 63.23	0	2657739..2658641	-	300	148662196	era	MRA_2388	-	GTP-binding protein Era
2440	 71.35	+1	2658715..2659056	-	113	148662197	-	MRA_2389	-	hypothetical protein
2441	 64.98	0	2659028..2660335	-	435	148662198	-	MRA_2390	-	putative transmembrane protein
2442	 62.30	0	2660332..2660880	-	182	148662199	-	MRA_2391	-	putative metalloprotease
2443	 64.87	0	2660884..2661942	-	352	148662200	phoH1	MRA_2392	-	putative PhoH-like protein PhoH1
2444	 64.69	0	2661914..2662216	-	100	148662201	-	MRA_2392A	-	hypothetical protein
2445	 66.21	0	2662213..2663526	-	437	148662202	-	MRA_2393	-	hypothetical protein
2446	 69.44	+1	2663619..2663906	+	95	148662203	-	MRA_2394	-	PE-PGRS family protein
2447	 69.46	+1	2664005..2664793	-	262	148662204	-	MRA_2395	-	hypothetical protein
2448	 67.97	0	2664807..2665955	-	382	148662205	dnaJ2	MRA_2396	-	chaperone protein DnaJ2
2449	 64.15	0	2666030..2667061	-	343	148662206	hrcA	MRA_2397	-	heat-inducible transcription repressor
2450	 63.52	0	2667233..2667550	+	105	148662207	-	MRA_2398	-	hypothetical protein
2451	 67.06	0	2667577..2668083	-	168	148662208	cfp2	MRA_2399	-	antigen Cfp2
2452	 63.43	0	2668183..2668398	-	71	148662209	mbtH	MRA_2400	-	protein MbtH
2453	 66.51	0	2668376..2669671	-	431	148662210	mbtG	MRA_2401	-	lysine-N-oxygenase Mbtg
2454	 67.74	0	2669668..2674053	-	1461	148662211	mbtF	MRA_2402	-	peptide synthetase
2455	 66.33	0	2674035..2679083	-	1682	148662212	mbtE	MRA_2403	-	peptide synthetase
2456	 66.93	0	2679223..2682237	-	1004	148662213	mbtD	MRA_2404	-	putative polyketide synthase MbtD
2457	 67.27	0	2682237..2683571	-	444	148662214	mbtC	MRA_2405	-	polyketide synthetase MbtC
2458	 68.86	+1	2683561..2687805	-	1414	148662215	mbtB	MRA_2406	-	dihydroaeruginoic acid synthetase
2459	 69.20	+1	2687904..2689601	+	565	148662216	mbtA	MRA_2407	-	2,3-dihydroxybenzoate-AMP ligase
2460	 66.23	0	2689697..2690617	+	306	148662217	mbtJ	MRA_2408	-	putative acetyl hydrolase MbtJ
2461	 64.15	0	2690621..2691973	-	450	148662218	mbtI	MRA_2409	-	salicylate synthase MbtI
2462	 63.33	0	2692426..2692635	+	69	148662219	-	MRA_2410	-	hypothetical protein
2463	 61.72	-1	2692733..2693986	+	417	148662220	-	MRA_2411	-	hypothetical protein
2464	 69.06	+1	2693983..2695110	-	375	148662221	hemN	MRA_2412	-	coproporphyrinogen III oxidase
2465	 60.86	-1	2695216..2695680	-	154	148662222	rpfD	MRA_2413	-	putative resuscitation-promoting factor RpfD
2466	 62.72	0	2695677..2696234	-	185	148662223	-	MRA_2414	-	hypothetical protein
2467	 64.01	0	2696647..2698338	+	563	148662224	nirA	MRA_2415	-	nitrite reductase
2468	 64.18	0	2698335..2699099	+	254	148662225	cysH	MRA_2416	-	phosphoadenosine phosphosulfate reductase
2469	 69.39	+1	2699096..2699941	+	281	148662226	-	MRA_2417	-	hypothetical protein
2470	 67.13	0	2699978..2701909	+	643	148662227	ggtB	MRA_2418	-	putative gamma-glutamyltranspeptidase precursor GgtB
2471	 63.92	0	2702040..2704043	+	667	148662228	-	MRA_2419	-	putative integral membrane protein
2472	 75.05	+2	2704767..2705852	+	361	148662229	-	MRA_2420	-	PE-PGRS family protein
2473	 66.67	0	2705877..2706932	-	351	148662230	cysA1	MRA_2421	-	sulfate ABC transporter ATP-binding protein CysA1
2474	 62.52	0	2706949..2707767	-	272	148662231	cysW	MRA_2422	-	sulfate ABC transporter permease protein CysW
2475	 64.32	0	2707764..2708615	-	283	148662232	cysT	MRA_2423	-	sulfate ABC transporter permease protein CysT
2476	 62.93	0	2708612..2709682	-	356	148662233	subI	MRA_2424	-	sulfate ABC transporter substrate-binding protein
2477	 67.16	0	2710010..2710213	-	67	148662234	-	MRA_2425	-	hypothetical protein
2478	 66.04	0	2710497..2712425	+	642	148662235	-	MRA_2426	-	hypothetical protein
2479	 64.55	0	2712503..2713258	-	251	148662236	lppR	MRA_2427	-	putative lipoprotein LppR
2480	 63.91	0	2713255..2715216	-	653	148662237	lepA	MRA_2428	-	GTP-binding protein LepA
2481	 66.67	0	2715237..2715806	+	189	148662238	-	MRA_2429	-	hypothetical protein
2482	 62.47	0	2715977..2716405	-	142	148662239	-	MRA_2430	-	hypothetical protein
2483	 66.06	0	2716665..2717486	+	273	148662240	-	MRA_2431	-	ribonuclease Z
2484	 68.50	0	2717454..2717726	-	90	148662241	-	MRA_2432	-	hypothetical protein
2485	 65.44	0	2717730..2718704	+	324	148662242	-	MRA_2433	-	PE family protein
2486	 63.69	0	2718462..2719301	-	279	148662243	-	MRA_2434	-	hypothetical protein
2487	 63.60	0	2719301..2720278	-	325	148662244	-	MRA_2435	-	hypothetical protein
2488	 64.67	0	2720278..2721933	-	551	148662245	-	MRA_2436	-	hypothetical protein
2489	 63.98	0	2722043..2722303	+	86	148662246	rpsT	MRA_2437	-	30S ribosomal protein S20
2490	 69.51	+1	2722319..2723269	-	316	148662247	-	MRA_2438	-	hypothetical protein
2491	 70.36	+1	2723300..2724844	-	514	148662248	-	MRA_2439	-	hypothetical protein
2492	 68.68	0	2724859..2725752	-	297	148662249	-	MRA_2440	-	hypothetical protein
2493	 66.09	0	2726092..2727300	-	402	148662250	eis	MRA_2442	-	hypothetical protein
2494	 69.16	+1	2727440..2728282	-	280	148662251	-	MRA_2443	-	hypothetical protein
2495	 62.10	0	2728363..2729106	-	247	148662252	-	MRA_2444	-	hypothetical protein
2496	 66.82	0	2729096..2729767	-	223	148662253	-	MRA_2445	-	putative phosphoglycerate mutase
2497	 64.83	0	2729764..2730144	-	126	148662254	-	MRA_2446	-	iojap-related protein
2498	 64.78	0	2730141..2730776	-	211	148662255	nadD	MRA_2447	-	nicotinic acid mononucleotide adenylyltransferase
2499	 67.77	0	2731051..2731323	+	90	148662256	-	MRA_2448	-	hypothetical protein
2500	 63.23	0	2731565..2732611	+	348	148662257	-	MRA_2449	-	hypothetical protein
2501	 65.87	0	2732744..2733745	-	333	148662258	-	MRA_2450	-	putative transposase
2502	 66.53	0	2733834..2735276	-	480	148662259	-	MRA_2451	-	hypothetical protein
2503	 67.12	0	2735276..2736151	-	291	148662260	-	MRA_2452	-	hypothetical protein
2504	 67.79	0	2736198..2737445	-	415	148662261	proA	MRA_2453	-	gamma-glutamyl phosphate reductase
2505	 67.41	0	2737546..2737815	+	89	148662262	-	MRA_2454	-	hypothetical protein
2506	 60.71	-1	2738161..2738748	+	195	148662263	ahpC	MRA_2455	-	hypothetical protein
2507	 60.49	-1	2738774..2739307	+	177	148662264	ahpD	MRA_2456	-	AhpD
2508	 59.83	-1	2739304..2739888	-	194	148662265	-	MRA_2457	-	PPE family protein
2509	 60.33	-1	2739935..2740234	-	99	148662266	-	MRA_2458	-	PE family protein
2510	 64.23	0	2740405..2740815	-	136	148662267	-	MRA_2458A	-	hypothetical protein
65.43	MEAN

3.37	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.