IslandPathversion 1.0

IslandPath Analysis: Mycobacterium tuberculosis H37Ra



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 65.43 STD DEV: 3.37
Mycobacterium tuberculosis H37Ra, complete genome - 1..4419977
4034 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2319	 66.15	0	2538884..2539078	-	64	148662076	-	MRA_2275	-	hypothetical protein
2320	 63.47	0	2538998..2539216	+	72	148662077	-	MRA_2276	-	hypothetical protein
2321	 67.23	0	2539245..2539778	-	177	148662078	-	MRA_2277	-	hypothetical protein
2322	 68.50	0	2539908..2540726	-	272	148662079	-	MRA_2278	-	hypothetical protein
2323	 64.69	0	2540740..2541801	-	353	148662080	-	MRA_2279	-	putative transcriptional regulatory protein
2324	 66.57	0	2542149..2543234	+	361	148662081	adhE2	MRA_2280	-	zinc-dependent alcohol dehydrogenase AdhE2
2325	 66.67	0	2543234..2543869	+	211	148662082	-	MRA_2281	-	hypothetical protein
2326	 64.54	0	2543946..2544368	-	140	148662083	-	MRA_2281A	-	hypothetical protein
2327	 69.44	+1	2544374..2545456	-	360	148662084	-	MRA_2282	-	apolipoprotein N-acyltransferase
2328	 66.77	0	2545545..2546498	+	317	148662085	-	MRA_2283	-	short chain dehydrogenase
2329	 69.08	+1	2546476..2548254	-	592	148662086	-	MRA_2284	-	hypothetical protein
2330	 67.56	0	2548604..2549833	+	409	148662087	-	MRA_2285	-	putative integral membrane protein
2331	 63.01	0	2550008..2551294	+	428	148662088	cyp124	MRA_2286	-	putative cytochrome p450 124 CYP124
2332	 56.90	-2	2551548..2552714	-	388	148662089	-	MRA_2287	-	hypothetical protein
2333	 64.42	0	2552711..2554180	-	489	148662090	cyp128	MRA_2288	-	putative cytochrome p450 128 CYP128
2334	 61.26	-1	2554193..2554525	-	110	148662091	-	MRA_2288A	-	hypothetical protein
2335	 63.64	0	2554602..2555129	+	175	148662092	lppN	MRA_2289	-	putative lipoprotein LppN
2336	 60.00	-1	2555236..2555535	+	99	148662093	-	MRA_2290	-	hypothetical protein
2337	 68.29	0	2555641..2556009	+	122	148662094	-	MRA_2291	-	putative transmembrane protein
2338	 66.67	0	2556006..2556335	+	109	148662095	-	MRA_2292	-	putative transmembrane protein
2339	 61.32	-1	2556392..2556709	-	105	148662096	-	MRA_2293	-	hypothetical protein
2340	 61.49	-1	2556787..2557656	+	289	148662097	-	MRA_2294	-	hypothetical protein
2341	 62.22	0	2557653..2558843	+	396	148662098	cyp121	MRA_2295	-	cytochrome p450 121 cyp121
2342	 61.92	-1	2559028..2559933	-	301	148662099	-	MRA_2296	-	putative glycerolphosphodiesterase
2343	 65.75	0	2559969..2560295	+	108	148662100	-	MRA_2297	-	IS6110 hypothetical protein
2344	 63.84	0	2560346..2561230	+	294	148662101	-	MRA_2298	-	IS6110 transposase
2345	 63.91	0	2561464..2562843	+	459	148662102	-	MRA_2299	-	putative dehydrogenase
2346	 62.09	0	2563077..2564735	+	552	148662103	pitB	MRA_2300	-	putative phosphate-transport permease PitB
2347	 65.39	0	2564842..2565780	-	312	148662104	-	MRA_2301	-	LysR family transcriptional regulator
2348	 66.67	0	2565845..2566039	+	64	148662105	-	MRA_2301A	-	hypothetical protein
2349	 65.59	0	2566049..2567344	+	431	148662106	lipM	MRA_2302	-	esterase LipM
2350	 65.62	0	2567377..2568714	+	445	148662107	-	MRA_2303	-	hypothetical protein
2351	 62.77	0	2568781..2569473	-	230	148662108	-	MRA_2304	-	hypothetical protein
2352	 65.87	0	2569607..2571235	+	542	148662109	yjcE	MRA_2305	-	Na+/H+ exchanger
2353	 64.29	0	2571232..2571609	+	125	148662110	-	MRA_2305A	-	hypothetical protein
2354	 57.47	-2	2571579..2572361	+	260	148662111	cdh	MRA_2306	-	CDP-diacylglycerol pyrophosphatase
2355	 63.57	0	2572503..2573018	+	171	148662112	lppO	MRA_2307	-	putative lipoprotein LppO
2356	 65.85	0	2573078..2573932	+	284	148662113	sseB	MRA_2308	-	putative thiosulfate sulfurtransferase SseB
2357	 67.56	0	2573933..2574157	-	74	148662114	-	MRA_2309	-	hypothetical protein
2358	 63.56	0	2574196..2574936	-	246	148662115	-	MRA_2310	-	hypothetical protein
2359	 64.79	0	2575231..2576454	+	407	148662116	-	MRA_2311	-	putative aminotransferase
2360	 64.48	0	2576676..2577314	+	212	148662117	-	MRA_2312	-	hypothetical protein
2361	 66.33	0	2577408..2578310	+	300	148662118	-	MRA_2313	-	haloalkane dehalogenase
2362	 64.02	0	2578342..2578794	+	150	148662119	-	MRA_2314	-	hypothetical protein
2363	 66.26	0	2578986..2579957	+	323	148662120	-	MRA_2315	-	putative oxidoreductase
2364	 62.04	-1	2579963..2581906	-	647	148662121	htpG	MRA_2316	-	heat shock protein 90
2365	 64.84	0	2581980..2582912	-	310	148662122	-	MRA_2317	-	hypothetical protein
2366	 65.80	0	2582919..2583611	+	230	148662123	cut2	MRA_2318	-	putative cutinase Cut2
2367	 66.26	0	2583717..2583959	+	80	148662124	-	MRA_2318A	-	hypothetical protein
2368	 62.34	0	2584000..2584923	-	307	148662125	-	MRA_2319	-	putative antibiotic-resistance protein
2369	 66.67	0	2584920..2585129	-	69	148662126	-	MRA_2320	-	hypothetical protein
2370	 67.44	0	2585713..2587002	+	429	148662127	-	MRA_2321	-	hypothetical protein
2371	 68.28	0	2587392..2587826	+	144	148662128	-	MRA_2322	-	hypothetical protein
2372	 67.61	0	2587755..2588600	-	281	148662129	-	MRA_2323	-	hypothetical protein
2373	 56.77	-2	2589132..2589323	-	63	148662130	-	MRA_2324	-	hypothetical protein
2374	 54.86	-2	2589408..2589839	-	143	148662131	-	MRA_2325	-	hypothetical protein
2375	 65.83	0	2589942..2590181	-	79	148662132	-	MRA_2326	-	hypothetical protein
2376	 62.76	0	2590323..2591039	+	238	148662133	-	MRA_2327	-	hypothetical protein
2377	 67.78	0	2591112..2591381	+	89	148662134	-	MRA_2328	-	hypothetical protein
2378	 63.82	0	2591747..2592202	-	151	148662135	-	MRA_2329	-	putative integrase
2379	 57.64	-2	2592949..2593236	+	95	148662136	-	MRA_2329A	-	hypothetical protein
2380	 70.14	+1	2593339..2593683	+	114	148662137	-	MRA_2330	-	putative excisionase
2381	 66.86	0	2593788..2594312	+	174	148662138	-	MRA_2331	-	hypothetical protein
2382	 60.74	-1	2594390..2594659	+	89	148662139	-	MRA_2332	-	hypothetical protein
2383	 64.68	0	2594956..2595810	-	284	148662140	-	MRA_2333	-	hypothetical protein
2384	 66.81	0	2595821..2597194	-	457	148662141	-	MRA_2334	-	hypothetical protein
2385	 65.09	0	2597191..2598708	-	505	148662142	-	MRA_2335	-	hypothetical protein
2386	 65.86	0	2598742..2599614	+	290	148662143	uspA	MRA_2336	-	sugar ABC transporter permease protein UspA
2387	 62.06	0	2599601..2600425	+	274	148662144	uspB	MRA_2337	-	sugar ABC transporter permease protein UspB
2388	 65.00	0	2600422..2601744	+	440	148662145	uspC	MRA_2338	-	sugar ABC transporter substrate-binding protein UspC
2389	 66.67	0	2601752..2602630	-	292	148662146	-	MRA_2339	-	hypothetical protein
2390	 64.43	0	2602627..2604057	-	476	148662147	rocE	MRA_2340	-	cationic amino acid transport integral membrane protein RocE
2391	 64.65	0	2604058..2604603	-	181	148662148	rocD2	MRA_2341	-	putative ornithine aminotransferase RocD2
2392	 64.86	0	2604603..2605268	-	221	148662149	rocD1	MRA_2342	-	putative ornithine aminotransferase RocD1
2393	 62.82	0	2605265..2606173	-	302	148662150	-	MRA_2343	-	hypothetical protein
2394	 65.55	0	2606238..2606684	+	148	148662151	-	MRA_2344	-	transcription regulator AsnC
2395	 66.55	0	2606913..2607761	-	282	148662152	-	MRA_2345	-	hypothetical protein
2396	 68.05	0	2607758..2609851	-	697	148662153	-	MRA_2346	-	cobalt ABC transporter ATP-binding protein
2397	 71.34	+1	2609892..2610383	+	163	148662154	-	MRA_2347	-	hypothetical protein
2398	 64.49	0	2610635..2611783	+	382	148662155	-	MRA_2348	-	PE family protein
2399	 61.76	-1	2611818..2613365	-	515	148662156	narK1	MRA_2349	-	nitrite extrusion protein 1 NarK1
2400	 62.31	0	2613599..2614126	-	175	148662157	lppP	MRA_2350	-	putative lipoprotein LppP
2401	 63.31	0	2614201..2614587	+	128	148662158	-	MRA_2351	-	hypothetical protein
2402	 62.83	0	2614644..2614982	+	112	148662159	-	MRA_2351A	-	hypothetical protein
2403	 63.45	0	2615012..2616658	+	548	148662160	mez	MRA_2352	-	malate dehydrogenase
2404	 65.24	0	2616612..2618225	-	537	148662161	-	MRA_2353	-	putative integral membrane transport protein
2405	 65.38	0	2618700..2619632	+	310	148662162	cysK1	MRA_2354	-	cysteine synthase
2406	 69.28	+1	2619636..2620325	+	229	148662163	cysE	MRA_2355	-	putative serine acetyltransferase CysE
2407	 56.24	-2	2620741..2621709	+	322	148662164	-	MRA_2356	-	hypothetical protein
2408	 64.08	0	2621773..2622891	-	372	148662165	-	MRA_2357	-	hypothetical protein
2409	 55.28	-2	2623011..2623967	-	318	148662166	moeW	MRA_2358	-	hypothetical protein
2410	 58.36	-2	2624597..2627485	+	962	148662167	mmpL9	MRA_2359	-	transmembrane transport protein MmpL9
2411	 70.85	+1	2627571..2628812	-	413	148662168	-	MRA_2360	-	PE-PGRS family protein
2412	 64.52	0	2629501..2629920	+	139	148662169	lppQ	MRA_2361	-	putative lipoprotein LppQ
2413	 65.89	0	2630176..2630433	+	85	148662170	-	MRA_2362	-	hypothetical protein
2414	 66.93	0	2630437..2632356	-	639	148662171	dnaG	MRA_2363	-	DNA primase
2415	 66.98	0	2632361..2633656	-	431	148662172	dgt	MRA_2364	-	deoxyguanosinetriphosphate triphosphohydrolase-like protein
2416	 67.83	0	2633725..2635707	+	660	148662173	-	MRA_2365	-	putative transmembrane protein
2417	 63.16	0	2635792..2636076	-	94	148662174	esxO	MRA_2366	-	putative esat-6 like protein EsxO
2418	 62.96	0	2636127..2636423	-	98	148662175	esxP	MRA_2367	-	putative esat-6 like protein EsxP
65.43	MEAN

3.37	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.