IslandPathversion 1.0

IslandPath Analysis: Mycobacterium tuberculosis H37Ra



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 65.43 STD DEV: 3.37
Mycobacterium tuberculosis H37Ra, complete genome - 1..4419977
4034 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
185	 63.81	0	210298..211032	+	244	148659942	-	MRA_0186	-	putative Mce associated membrane protein
186	 64.23	0	211063..212172	-	369	148659943	lprO	MRA_0187	-	putative lipoprotein LprO
187	 63.94	0	212252..213610	-	452	148659944	-	MRA_0188	-	putative transmembrane protein
188	 63.13	0	213637..214371	-	244	148659945	-	MRA_0189	-	hypothetical protein
189	 65.77	0	214388..215500	-	370	148659946	sigG	MRA_0190	-	RNA polymerase factor sigma-70
190	 66.55	0	215448..216287	+	279	148659947	-	MRA_0191	-	putative lysophospholipase
191	 69.60	+1	216329..217078	+	249	148659948	-	MRA_0192	-	hypothetical protein
192	 66.86	0	217075..217584	+	169	148659949	-	MRA_0193	-	hypothetical protein
193	 65.90	0	217629..219704	+	691	148659950	bglS	MRA_0194	-	putative beta-glucosidase
194	 67.12	0	220065..220727	+	220	148659951	-	MRA_0195	-	O-methyltransferase
195	 62.27	0	220846..221277	+	143	148659952	-	MRA_0196	-	putative transmembrane protein
196	 65.86	0	221356..223083	-	575	148659953	ilvD	MRA_0197	-	dihydroxy-acid dehydratase
197	 64.26	0	223231..223521	+	96	148659954	-	MRA_0198	-	hypothetical protein
198	 67.87	0	223649..224890	+	413	148659955	-	MRA_0199	-	putative integral membrane protein
199	 66.30	0	224924..226024	+	366	148659956	-	MRA_0200	-	hypothetical protein
200	 61.58	-1	226084..227931	-	615	148659957	-	MRA_0201	-	hypothetical protein
201	 66.81	0	228238..231822	+	1194	148659958	-	MRA_0202	-	drugs ABC transporter ATP-binding protein
202	 63.21	0	232259..232894	+	211	148659959	-	MRA_0203	-	LuxR family transcriptional regulator
203	 67.86	0	233007..233591	+	194	148659960	-	MRA_0204	-	putative transcriptional regulatory protein
204	 66.44	0	233591..235837	+	748	148659961	-	MRA_0205	-	putative oxidoreductase
205	 63.65	0	235878..237869	-	663	148659962	-	MRA_0206	-	putative zinc metalloprotease
206	 64.24	0	237912..238571	+	219	148659963	-	MRA_0207	-	hypothetical protein
207	 67.10	0	238568..239257	+	229	148659964	-	MRA_0208	-	putative transmembrane protein
208	 67.26	0	239254..239757	-	167	148659965	-	MRA_0209	-	hypothetical protein
209	 65.91	0	239754..242654	-	966	148659966	mmpL11	MRA_0210	-	membrane protein MmpL11
210	 67.15	0	242876..243286	+	136	148659967	-	MRA_0211	-	hypothetical protein
211	 66.98	0	243338..244621	-	427	148659968	-	MRA_0212	-	putative transmembrane protein
212	 65.13	0	244746..245849	+	367	148659969	-	MRA_0213	-	putative transmembrane protein
213	 65.29	0	245846..248680	-	944	148659970	mmpL3	MRA_0214	-	putative transmembrane transport protein MmpL3
214	 64.61	0	248746..249474	-	242	148659971	-	MRA_0215	-	hypothetical protein
215	 64.77	0	249477..250268	-	263	148659972	trmB	MRA_0216	-	tRNA (guanine-N(7))-methyltransferase
216	 70.17	+1	250400..251485	+	361	148659973	-	MRA_0217	-	hypothetical protein
217	 69.44	+1	251482..252960	+	492	148659974	-	MRA_0218	-	hypothetical protein
218	 64.09	0	253144..254964	+	606	148659975	pckA	MRA_0219	-	phosphoenolpyruvate carboxykinase
219	 65.64	0	255031..256002	-	323	148659976	nadR	MRA_0220	-	putative transcriptional regulatory protein NadR
220	 61.87	-1	255999..257312	-	437	148659977	-	MRA_0221	-	putative methyltransferase
221	 63.38	0	257426..259039	+	537	148659978	fadD4	MRA_0222	-	acyl-CoA synthetase
222	 65.08	0	259145..260218	-	357	148659979	fadE3	MRA_0223	-	acyl-CoA dehydrogenase FadE3
223	 66.07	0	260275..261288	+	337	148659980	-	MRA_0224	-	hypothetical protein
224	 67.22	0	261285..262193	-	302	148659981	lipW	MRA_0225	-	putative esterase LipW
225	 67.12	0	262286..263614	+	442	148659982	-	MRA_0226	-	putative transmembrane protein
226	 66.48	0	263616..264164	+	182	148659983	-	MRA_0227	-	putative transmembrane protein
227	 65.68	0	264174..265385	+	403	148659984	lipC	MRA_0228	-	esterase LipC
228	 62.70	0	265429..266838	+	469	148659985	-	MRA_0229	-	hypothetical protein
229	 65.15	0	266869..267657	+	262	148659986	echA1	MRA_0230	-	enoyl-CoA hydratase
230	 64.07	0	267663..269126	-	487	148659987	-	MRA_0231	-	aldehyde dehydrogenase
231	 66.93	0	269225..269989	-	254	148659988	-	MRA_0232	-	putative methyltransferase
232	 66.32	0	270025..271179	+	384	148659989	-	MRA_0233	-	glycosyltransferase
233	 69.50	+1	271196..272926	-	576	148659990	-	MRA_0234	-	putative transmembrane protein
234	 65.32	0	272936..274201	-	421	148659991	-	MRA_0235	-	hypothetical protein
235	 69.20	+1	274417..275640	+	407	148659992	-	MRA_0236	-	putative integral membrane acyltransferase
236	 61.97	-1	275668..276348	-	226	148659993	-	MRA_0237	-	hypothetical protein
237	 65.85	0	276345..277325	-	326	148659994	php	MRA_0238	-	phosphotriesterase
238	 63.56	0	277420..279126	+	568	148659995	fadE4	MRA_0239	-	acyl-CoA dehydrogenase FadE4
239	 67.10	0	279261..279950	+	229	148659996	-	MRA_0240	-	TetR/AcrR-family transcriptional regulator
240	 64.87	0	279947..280891	+	314	148659997	nrdB	MRA_0241	-	ribonucleotide-diphosphate reductase subunit beta
241	 66.80	0	280967..282502	-	511	148659998	gabD1	MRA_0242	-	succinic semialdehyde dehydrogenase
242	 62.73	0	282528..283976	-	482	148659999	-	MRA_0243	-	putative transmembrane protein
243	 71.45	+1	284011..288213	-	1400	148660000	-	MRA_0244	-	putative transmembrane protein
244	 64.94	0	288260..288433	-	57	148660001	-	MRA_0245	-	small secreted protein
245	 68.64	0	288548..289714	+	388	148660002	lpqI	MRA_0246	-	putative lipoprotein LpqI
246	 63.74	0	289790..290404	+	204	148660003	-	MRA_0247	-	TetR family transcriptional regulator
247	 65.38	0	290466..290699	+	77	148660004	-	MRA_0248	-	hypothetical protein
248	 62.79	0	290707..291144	+	145	148660005	-	MRA_0249	-	hypothetical protein
249	 66.31	0	291174..292016	-	280	148660006	-	MRA_0250	-	hypothetical protein
250	 67.99	0	292027..293391	-	454	148660007	fabG	MRA_0251	-	3-ketoacyl-(acyl-carrier-protein) reductase
251	 67.88	0	293533..294855	+	440	148660008	fadA2	MRA_0252	-	acetyl-CoA acetyltransferase
252	 64.27	0	295160..296995	-	611	148660009	fadE5	MRA_0253	-	acyl-CoA dehydrogenase FadE5
253	 64.21	0	297367..297855	+	162	148660010	-	MRA_0254	-	putative oxidoreductase
254	 60.34	-1	298171..299481	+	436	148660011	-	MRA_0255	-	putative integral membrane protein
255	 58.63	-2	299478..300224	-	248	148660012	-	MRA_0256	-	fumarate reductase iron-sulfur subunit
256	 63.83	0	300225..302165	-	646	148660013	sdhA	MRA_0257	-	succinate dehydrogenase flavoprotein subunit
257	 58.39	-2	302196..303017	-	273	148660014	-	MRA_0258	-	putative succinate dehydrogenase
258	 61.90	-1	303097..303390	-	97	148660015	-	MRA_0259	-	hypothetical protein
259	 66.67	0	303535..304014	-	159	148660016	hsp	MRA_0260	-	heat shock protein Hsp
260	 65.61	0	304228..306789	+	853	148660017	nirB	MRA_0261	-	NAD(P)H-dependent nitrite reductase large subunit
261	 64.71	0	306815..307171	+	118	148660018	nirD	MRA_0262	-	putative nitrite reductase
262	 67.24	0	307187..307711	-	174	148660019	cobU	MRA_0263	-	cobinamide kinase/cobinamide phosphate guanylyltransferase
263	 69.49	+1	307736..309220	-	494	148660020	cobQ1	MRA_0264	-	cobyric acid synthase
264	 66.73	0	309239..310801	-	520	148660021	-	MRA_0265	-	PPE family protein
265	 62.13	0	311061..311435	+	124	148660022	-	MRA_0265A	-	hypothetical protein
266	 62.94	0	311656..312111	-	151	148660023	-	MRA_0266	-	hypothetical protein
267	 66.13	0	312136..312879	-	247	148660024	-	MRA_0267	-	hypothetical protein
268	 64.83	0	312876..314021	-	381	148660025	-	MRA_0268	-	bifunctional uroporphyrinogen-III synthetase/response regulator domain-containing protein
269	 63.90	0	314121..315530	-	469	148660026	narK3	MRA_0269	-	integral membrane nitrite extrusion protein NarK3
270	 68.13	0	315671..316216	-	181	148660027	aac	MRA_0270	-	aminoglycoside 2-N-acetyltransferase
271	 68.33	0	316226..317128	-	300	148660028	-	MRA_0271	-	hypothetical protein
272	 69.04	+1	317145..317777	-	210	148660029	-	MRA_0272	-	hypothetical protein
273	 66.26	0	317873..318865	-	330	148660030	-	MRA_0273	-	iron ABC transporter substrate-binding protein
274	 68.71	0	318887..322516	-	1209	148660031	oplA	MRA_0274	-	putative 5-oxoprolinase OplA
275	 65.45	0	322693..324084	+	463	148660032	narU	MRA_0275	-	integral membrane nitrite extrusion protein NarU
276	 61.96	-1	324126..324635	-	169	148660033	-	MRA_0276	-	hypothetical protein
277	 69.26	+1	324700..325893	-	397	148660034	-	MRA_0277	-	hypothetical protein
278	 64.65	0	325929..327611	+	560	148660035	fadD2	MRA_0278	-	acyl-CoA synthetase
279	 66.71	0	327628..329823	-	731	148660036	fadE6	MRA_0279	-	acyl-CoA dehydrogenase FadE6
280	 65.08	0	329937..331070	-	377	148660037	-	MRA_0280	-	hypothetical protein
281	 61.84	-1	331067..331687	-	206	148660038	-	MRA_0281	-	putative transcriptional regulatory protein
282	 62.20	0	331784..332365	+	193	148660039	-	MRA_0282	-	hypothetical protein
283	 68.04	0	332295..333020	-	241	148660040	-	MRA_0283	-	MarR family transcriptional regulator
284	 66.88	0	333110..334030	+	306	148660041	-	MRA_0284	-	hypothetical protein
65.43	MEAN

3.37	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.