IslandPathversion 1.0

IslandPath Analysis: Mycobacterium tuberculosis H37Ra



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 65.43 STD DEV: 3.37
Mycobacterium tuberculosis H37Ra, complete genome - 1..4419977
4034 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2267	 72.19	+2	2481313..2482398	+	361	148662024	cobT	MRA_2223	-	nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase
2268	 71.33	+1	2482395..2483144	+	249	148662025	cobS	MRA_2224	-	cobalamin synthase
2269	 66.86	0	2483302..2484840	+	512	148662026	-	MRA_2225	-	putative integral membrane protein
2270	 65.40	0	2484766..2485872	-	368	148662027	ilvE	MRA_2226	-	branched-chain amino acid aminotransferase
2271	 66.84	0	2485944..2487083	-	379	148662028	gcvT	MRA_2227	-	glycine cleavage system aminomethyltransferase T
2272	 67.28	0	2487092..2488228	+	378	148662029	-	MRA_2228	-	hypothetical protein
2273	 67.38	0	2488240..2489787	+	515	148662030	pepB	MRA_2229	-	leucyl aminopeptidase
2274	 66.10	0	2489825..2491603	-	592	148662031	ephD	MRA_2230	-	short chain dehydrogenase
2275	 67.69	0	2491867..2493528	+	553	148662032	dlaT	MRA_2231	-	dihydrolipoamide acetyltransferase
2276	 67.77	0	2493528..2494433	+	301	148662033	-	MRA_2232	-	hypothetical protein
2277	 68.69	0	2494486..2495178	+	230	148662034	lipB	MRA_2233	-	lipoyltransferase
2278	 67.52	0	2495175..2496110	+	311	148662035	lipA	MRA_2234	-	lipoyl synthase
2279	 66.93	0	2496137..2496889	+	250	148662036	-	MRA_2235	-	putative transmembrane protein
2280	 68.09	0	2496896..2497318	-	140	148662037	-	MRA_2236	-	hypothetical protein
2281	 61.24	-1	2497517..2498953	+	478	148662038	glnA1	MRA_2237	-	glutamine synthetase
2282	 68.51	0	2499271..2502255	-	994	148662039	glnE	MRA_2238	-	putative glutamate-ammonia-ligase adenylyltransferase
2283	 63.83	0	2502304..2503644	-	446	148662040	glnA2	MRA_2239	-	glutamine synthetase
2284	 67.11	0	2503739..2505301	-	520	148662041	-	MRA_2240	-	proteinase
2285	 65.71	0	2505363..2506925	-	520	148662042	-	MRA_2241	-	putative exported protease
2286	 68.92	+1	2507127..2507348	-	73	148662043	-	MRA_2242	-	hypothetical protein
2287	 67.26	0	2507644..2508489	+	281	148662044	panB	MRA_2243	-	3-methyl-2-oxobutanoate hydroxymethyltransferase
2288	 67.25	0	2508734..2510275	+	513	148662045	-	MRA_2244	-	hypothetical protein
2289	 65.96	0	2510768..2511052	+	94	148662046	-	MRA_2245	-	hypothetical protein
2290	 60.73	-1	2511238..2511540	-	100	148662047	-	MRA_2246	-	hypothetical protein
2291	 65.94	0	2511546..2512640	-	364	148662048	-	MRA_2247	-	bifunctional RNase H/acid phosphatase
2292	 65.45	0	2512637..2513374	-	245	148662049	-	MRA_2248	-	hypothetical protein
2293	 68.33	0	2513371..2514510	-	379	148662050	-	MRA_2249	-	hypothetical protein
2294	 67.31	0	2514507..2515601	-	364	148662051	cobC	MRA_2250	-	hypothetical protein
2295	 63.44	0	2515616..2515987	-	123	148662052	-	MRA_2251	-	hypothetical protein
2296	 68.04	0	2516180..2517055	+	291	148662053	-	MRA_2252	-	hypothetical protein
2297	 66.06	0	2517048..2517539	+	163	148662054	ptpA	MRA_2253	-	protein tyrosine phosphatase
2298	 65.69	0	2517539..2518354	+	271	148662055	surF1	MRA_2254	-	putative surfeit locus protein 1
2299	 71.97	+1	2518336..2519277	-	313	148662056	cobD	MRA_2255	-	cobalamin biosynthesis protein
2300	 64.84	0	2519391..2520158	+	255	148662057	-	MRA_2256	-	hypothetical protein
2301	 65.40	0	2520253..2520489	-	78	148662058	-	MRA_2257	-	hypothetical protein
2302	 62.77	0	2520617..2521078	-	153	148662059	ahpE	MRA_2258	-	AhpC/TSA family protein
2303	 63.73	0	2521078..2521554	-	158	148662060	-	MRA_2259	-	hypothetical protein
2304	 67.04	0	2521592..2522389	-	265	148662061	-	MRA_2260	-	hypothetical protein
2305	 64.71	0	2522441..2525146	+	901	148662062	aceE	MRA_2261	-	pyruvate dehydrogenase subunit E1
2306	 67.23	0	2525206..2526450	+	414	148662063	-	MRA_2262	-	hypothetical protein
2307	 69.64	+1	2526689..2527597	+	302	148662064	fabD	MRA_2263	-	malonyl CoA acyl carrier protein transacylase FabD
2308	 60.34	-1	2527673..2528020	+	115	148662065	acpP	MRA_2264	-	acyl carrier protein
2309	 67.07	0	2528017..2529267	+	416	148662066	kasA	MRA_2265	-	3-oxoacyl-(acyl carrier protein) synthase II
2310	 65.53	0	2529298..2530614	+	438	148662067	kasB	MRA_2266	-	3-oxoacyl-(acyl carrier protein) synthase II
2311	 67.72	0	2530645..2532066	+	473	148662068	accD6	MRA_2267	-	propionyl-CoA carboxylase subunit beta AccD6
2312	 66.42	0	2532262..2533077	+	271	148662069	-	MRA_2268	-	hypothetical protein
2313	 67.63	0	2533146..2534696	-	516	148662070	glpD1	MRA_2269	-	glycerol-3-phosphate dehydrogenase Glpd1
2314	 65.79	0	2534690..2535259	-	189	148662071	-	MRA_2270	-	putative transcriptional regulatory protein
2315	 68.24	0	2535307..2536896	+	529	148662072	-	MRA_2271	-	putative flavoprotein
2316	 63.87	0	2536893..2537822	+	309	148662073	-	MRA_2272	-	diacylglycerol kinase
2317	 60.71	-1	2537888..2538391	+	167	148662074	-	MRA_2273	-	putative secreted protein
2318	 64.04	0	2538424..2538879	-	151	148662075	-	MRA_2274	-	putative integral membrane protein
2319	 66.15	0	2538884..2539078	-	64	148662076	-	MRA_2275	-	hypothetical protein
2320	 63.47	0	2538998..2539216	+	72	148662077	-	MRA_2276	-	hypothetical protein
2321	 67.23	0	2539245..2539778	-	177	148662078	-	MRA_2277	-	hypothetical protein
2322	 68.50	0	2539908..2540726	-	272	148662079	-	MRA_2278	-	hypothetical protein
2323	 64.69	0	2540740..2541801	-	353	148662080	-	MRA_2279	-	putative transcriptional regulatory protein
2324	 66.57	0	2542149..2543234	+	361	148662081	adhE2	MRA_2280	-	zinc-dependent alcohol dehydrogenase AdhE2
2325	 66.67	0	2543234..2543869	+	211	148662082	-	MRA_2281	-	hypothetical protein
2326	 64.54	0	2543946..2544368	-	140	148662083	-	MRA_2281A	-	hypothetical protein
2327	 69.44	+1	2544374..2545456	-	360	148662084	-	MRA_2282	-	apolipoprotein N-acyltransferase
2328	 66.77	0	2545545..2546498	+	317	148662085	-	MRA_2283	-	short chain dehydrogenase
2329	 69.08	+1	2546476..2548254	-	592	148662086	-	MRA_2284	-	hypothetical protein
2330	 67.56	0	2548604..2549833	+	409	148662087	-	MRA_2285	-	putative integral membrane protein
2331	 63.01	0	2550008..2551294	+	428	148662088	cyp124	MRA_2286	-	putative cytochrome p450 124 CYP124
2332	 56.90	-2	2551548..2552714	-	388	148662089	-	MRA_2287	-	hypothetical protein
2333	 64.42	0	2552711..2554180	-	489	148662090	cyp128	MRA_2288	-	putative cytochrome p450 128 CYP128
2334	 61.26	-1	2554193..2554525	-	110	148662091	-	MRA_2288A	-	hypothetical protein
2335	 63.64	0	2554602..2555129	+	175	148662092	lppN	MRA_2289	-	putative lipoprotein LppN
2336	 60.00	-1	2555236..2555535	+	99	148662093	-	MRA_2290	-	hypothetical protein
2337	 68.29	0	2555641..2556009	+	122	148662094	-	MRA_2291	-	putative transmembrane protein
2338	 66.67	0	2556006..2556335	+	109	148662095	-	MRA_2292	-	putative transmembrane protein
2339	 61.32	-1	2556392..2556709	-	105	148662096	-	MRA_2293	-	hypothetical protein
2340	 61.49	-1	2556787..2557656	+	289	148662097	-	MRA_2294	-	hypothetical protein
2341	 62.22	0	2557653..2558843	+	396	148662098	cyp121	MRA_2295	-	cytochrome p450 121 cyp121
2342	 61.92	-1	2559028..2559933	-	301	148662099	-	MRA_2296	-	putative glycerolphosphodiesterase
2343	 65.75	0	2559969..2560295	+	108	148662100	-	MRA_2297	-	IS6110 hypothetical protein
2344	 63.84	0	2560346..2561230	+	294	148662101	-	MRA_2298	-	IS6110 transposase
2345	 63.91	0	2561464..2562843	+	459	148662102	-	MRA_2299	-	putative dehydrogenase
2346	 62.09	0	2563077..2564735	+	552	148662103	pitB	MRA_2300	-	putative phosphate-transport permease PitB
2347	 65.39	0	2564842..2565780	-	312	148662104	-	MRA_2301	-	LysR family transcriptional regulator
2348	 66.67	0	2565845..2566039	+	64	148662105	-	MRA_2301A	-	hypothetical protein
2349	 65.59	0	2566049..2567344	+	431	148662106	lipM	MRA_2302	-	esterase LipM
2350	 65.62	0	2567377..2568714	+	445	148662107	-	MRA_2303	-	hypothetical protein
2351	 62.77	0	2568781..2569473	-	230	148662108	-	MRA_2304	-	hypothetical protein
2352	 65.87	0	2569607..2571235	+	542	148662109	yjcE	MRA_2305	-	Na+/H+ exchanger
2353	 64.29	0	2571232..2571609	+	125	148662110	-	MRA_2305A	-	hypothetical protein
2354	 57.47	-2	2571579..2572361	+	260	148662111	cdh	MRA_2306	-	CDP-diacylglycerol pyrophosphatase
2355	 63.57	0	2572503..2573018	+	171	148662112	lppO	MRA_2307	-	putative lipoprotein LppO
2356	 65.85	0	2573078..2573932	+	284	148662113	sseB	MRA_2308	-	putative thiosulfate sulfurtransferase SseB
2357	 67.56	0	2573933..2574157	-	74	148662114	-	MRA_2309	-	hypothetical protein
2358	 63.56	0	2574196..2574936	-	246	148662115	-	MRA_2310	-	hypothetical protein
2359	 64.79	0	2575231..2576454	+	407	148662116	-	MRA_2311	-	putative aminotransferase
2360	 64.48	0	2576676..2577314	+	212	148662117	-	MRA_2312	-	hypothetical protein
2361	 66.33	0	2577408..2578310	+	300	148662118	-	MRA_2313	-	haloalkane dehalogenase
2362	 64.02	0	2578342..2578794	+	150	148662119	-	MRA_2314	-	hypothetical protein
2363	 66.26	0	2578986..2579957	+	323	148662120	-	MRA_2315	-	putative oxidoreductase
2364	 62.04	-1	2579963..2581906	-	647	148662121	htpG	MRA_2316	-	heat shock protein 90
2365	 64.84	0	2581980..2582912	-	310	148662122	-	MRA_2317	-	hypothetical protein
2366	 65.80	0	2582919..2583611	+	230	148662123	cut2	MRA_2318	-	putative cutinase Cut2
65.43	MEAN

3.37	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.