IslandPathversion 1.0

IslandPath Analysis: Mycobacterium tuberculosis H37Ra



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 65.43 STD DEV: 3.37
Mycobacterium tuberculosis H37Ra, complete genome - 1..4419977
4034 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2226	 63.84	0	2440061..2440945	-	294	148661983	-	MRA_2182	-	IS6110 transposase
2227	 65.75	0	2440996..2441322	-	108	148661984	-	MRA_2183	-	IS6110 hypothetical protein
2228	 62.22	0	2441467..2441871	-	134	148661985	-	MRA_2184	-	putative transmembrane protein
2229	 67.15	0	2442137..2442757	+	206	148661986	-	MRA_2185	-	hypothetical protein
2230	 64.91	0	2442853..2443536	+	227	148661987	lppM	MRA_2186	-	putative lipoprotein LppM
2231	 63.36	0	2443533..2444438	-	301	148661988	-	MRA_2187	-	hypothetical protein
2232	 67.61	0	2444749..2445807	+	352	148661989	idsA2	MRA_2188	-	putative geranylgeranyl pyrophosphate synthetase IdsA2
2233	 64.73	0	2445811..2447361	+	516	148661990	-	MRA_2189	-	putative integral membrane protein
2234	 66.67	0	2447348..2447788	-	146	148661991	-	MRA_2190	-	hypothetical protein
2235	 65.00	0	2447843..2449042	+	399	148661992	pknL	MRA_2191	-	serine/threonine protein kinase
2236	 65.02	0	2449184..2449849	-	221	148661993	-	MRA_2192	-	putative transposase
2237	 64.22	0	2450234..2451622	-	462	148661994	aroG	MRA_2193	-	putative phospho-2-dehydro-3-deoxyheptonate aldolase
2238	 65.48	0	2451713..2452219	-	168	148661995	-	MRA_2194	-	hypothetical protein
2239	 64.64	0	2452229..2453116	-	295	148661996	-	MRA_2195	-	putative integral membrane protein
2240	 65.89	0	2453204..2454487	+	427	148661997	-	MRA_2196	-	putative integral membrane protein
2241	 60.08	-1	2454488..2455231	-	247	148661998	-	MRA_2197	-	1-acylglycerol-3-phosphate O-acyltransferase
2242	 67.17	0	2455317..2455712	-	131	148661999	-	MRA_2198	-	hypothetical protein
2243	 67.11	0	2455709..2456848	-	379	148662000	-	MRA_2199	-	hypothetical protein
2244	 57.01	-2	2456968..2457402	-	144	148662001	-	MRA_2200	-	hypothetical protein
2245	 62.31	0	2457507..2457896	-	129	148662002	-	MRA_2201	-	hypothetical protein
2246	 63.62	0	2458062..2459864	+	600	148662003	fadD15	MRA_2202	-	long-chain-fatty-acid--CoA ligase
2247	 68.31	0	2459895..2461052	-	385	148662004	-	MRA_2203	-	glycosyl transferase
2248	 68.60	0	2461149..2461922	-	257	148662005	-	MRA_2204	-	hypothetical protein
2249	 66.41	0	2462017..2463174	-	385	148662006	-	MRA_2205	-	hypothetical protein
2250	 69.05	+1	2463360..2463611	-	83	148662007	-	MRA_2206	-	hypothetical protein
2251	 69.66	+1	2463721..2465658	+	645	148662008	-	MRA_2207	-	hypothetical protein
2252	 69.63	+1	2465533..2466645	-	370	148662009	trpD	MRA_2208	-	anthranilate phosphoribosyltransferase
2253	 58.66	-2	2466803..2467414	+	203	148662010	ctaE	MRA_2209	-	cytochrome c oxidase subunit III
2254	 64.53	0	2467455..2468297	+	280	148662011	qcrC	MRA_2210	-	cytochrome c family protein
2255	 62.25	0	2468294..2469583	+	429	148662012	qcrA	MRA_2211	-	putative iron-sulfur protein
2256	 62.48	0	2469580..2471229	+	549	148662013	qcrB	MRA_2212	-	ubiquinol-cytochrome C reductase QcrB
2257	 66.98	0	2471406..2472050	-	214	148662014	-	MRA_2213	-	putative transmembrane protein
2258	 66.56	0	2472050..2472949	-	299	148662015	mmpS3	MRA_2214	-	putative membrane protein MmpS3
2259	 62.38	0	2473135..2473554	-	139	148662016	-	MRA_2215	-	putative integral membrane protein
2260	 59.62	-1	2473562..2474653	-	363	148662017	ctaC	MRA_2216	-	cytochrome c oxidase subunit II
2261	 66.11	0	2474899..2476857	+	652	148662018	asnB	MRA_2217	-	putative asparagine synthetase
2262	 63.79	0	2476955..2477929	-	324	148662019	cbhK	MRA_2218	-	carbohydrate kinase CbhK
2263	 66.38	0	2478133..2478825	+	230	148662020	-	MRA_2219	-	hypothetical protein
2264	 62.46	0	2478833..2479189	-	118	148662021	-	MRA_2220	-	hypothetical protein
2265	 68.69	0	2479289..2480575	-	428	148662022	-	MRA_2221	-	hypothetical protein
2266	 66.53	0	2480524..2481234	+	236	148662023	-	MRA_2222	-	putative transmembrane protein
2267	 72.19	+2	2481313..2482398	+	361	148662024	cobT	MRA_2223	-	nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase
2268	 71.33	+1	2482395..2483144	+	249	148662025	cobS	MRA_2224	-	cobalamin synthase
2269	 66.86	0	2483302..2484840	+	512	148662026	-	MRA_2225	-	putative integral membrane protein
2270	 65.40	0	2484766..2485872	-	368	148662027	ilvE	MRA_2226	-	branched-chain amino acid aminotransferase
2271	 66.84	0	2485944..2487083	-	379	148662028	gcvT	MRA_2227	-	glycine cleavage system aminomethyltransferase T
2272	 67.28	0	2487092..2488228	+	378	148662029	-	MRA_2228	-	hypothetical protein
2273	 67.38	0	2488240..2489787	+	515	148662030	pepB	MRA_2229	-	leucyl aminopeptidase
2274	 66.10	0	2489825..2491603	-	592	148662031	ephD	MRA_2230	-	short chain dehydrogenase
2275	 67.69	0	2491867..2493528	+	553	148662032	dlaT	MRA_2231	-	dihydrolipoamide acetyltransferase
2276	 67.77	0	2493528..2494433	+	301	148662033	-	MRA_2232	-	hypothetical protein
2277	 68.69	0	2494486..2495178	+	230	148662034	lipB	MRA_2233	-	lipoyltransferase
2278	 67.52	0	2495175..2496110	+	311	148662035	lipA	MRA_2234	-	lipoyl synthase
2279	 66.93	0	2496137..2496889	+	250	148662036	-	MRA_2235	-	putative transmembrane protein
2280	 68.09	0	2496896..2497318	-	140	148662037	-	MRA_2236	-	hypothetical protein
2281	 61.24	-1	2497517..2498953	+	478	148662038	glnA1	MRA_2237	-	glutamine synthetase
2282	 68.51	0	2499271..2502255	-	994	148662039	glnE	MRA_2238	-	putative glutamate-ammonia-ligase adenylyltransferase
2283	 63.83	0	2502304..2503644	-	446	148662040	glnA2	MRA_2239	-	glutamine synthetase
2284	 67.11	0	2503739..2505301	-	520	148662041	-	MRA_2240	-	proteinase
2285	 65.71	0	2505363..2506925	-	520	148662042	-	MRA_2241	-	putative exported protease
2286	 68.92	+1	2507127..2507348	-	73	148662043	-	MRA_2242	-	hypothetical protein
2287	 67.26	0	2507644..2508489	+	281	148662044	panB	MRA_2243	-	3-methyl-2-oxobutanoate hydroxymethyltransferase
2288	 67.25	0	2508734..2510275	+	513	148662045	-	MRA_2244	-	hypothetical protein
2289	 65.96	0	2510768..2511052	+	94	148662046	-	MRA_2245	-	hypothetical protein
2290	 60.73	-1	2511238..2511540	-	100	148662047	-	MRA_2246	-	hypothetical protein
2291	 65.94	0	2511546..2512640	-	364	148662048	-	MRA_2247	-	bifunctional RNase H/acid phosphatase
2292	 65.45	0	2512637..2513374	-	245	148662049	-	MRA_2248	-	hypothetical protein
2293	 68.33	0	2513371..2514510	-	379	148662050	-	MRA_2249	-	hypothetical protein
2294	 67.31	0	2514507..2515601	-	364	148662051	cobC	MRA_2250	-	hypothetical protein
2295	 63.44	0	2515616..2515987	-	123	148662052	-	MRA_2251	-	hypothetical protein
2296	 68.04	0	2516180..2517055	+	291	148662053	-	MRA_2252	-	hypothetical protein
2297	 66.06	0	2517048..2517539	+	163	148662054	ptpA	MRA_2253	-	protein tyrosine phosphatase
2298	 65.69	0	2517539..2518354	+	271	148662055	surF1	MRA_2254	-	putative surfeit locus protein 1
2299	 71.97	+1	2518336..2519277	-	313	148662056	cobD	MRA_2255	-	cobalamin biosynthesis protein
2300	 64.84	0	2519391..2520158	+	255	148662057	-	MRA_2256	-	hypothetical protein
2301	 65.40	0	2520253..2520489	-	78	148662058	-	MRA_2257	-	hypothetical protein
2302	 62.77	0	2520617..2521078	-	153	148662059	ahpE	MRA_2258	-	AhpC/TSA family protein
2303	 63.73	0	2521078..2521554	-	158	148662060	-	MRA_2259	-	hypothetical protein
2304	 67.04	0	2521592..2522389	-	265	148662061	-	MRA_2260	-	hypothetical protein
2305	 64.71	0	2522441..2525146	+	901	148662062	aceE	MRA_2261	-	pyruvate dehydrogenase subunit E1
2306	 67.23	0	2525206..2526450	+	414	148662063	-	MRA_2262	-	hypothetical protein
2307	 69.64	+1	2526689..2527597	+	302	148662064	fabD	MRA_2263	-	malonyl CoA acyl carrier protein transacylase FabD
2308	 60.34	-1	2527673..2528020	+	115	148662065	acpP	MRA_2264	-	acyl carrier protein
2309	 67.07	0	2528017..2529267	+	416	148662066	kasA	MRA_2265	-	3-oxoacyl-(acyl carrier protein) synthase II
2310	 65.53	0	2529298..2530614	+	438	148662067	kasB	MRA_2266	-	3-oxoacyl-(acyl carrier protein) synthase II
2311	 67.72	0	2530645..2532066	+	473	148662068	accD6	MRA_2267	-	propionyl-CoA carboxylase subunit beta AccD6
2312	 66.42	0	2532262..2533077	+	271	148662069	-	MRA_2268	-	hypothetical protein
2313	 67.63	0	2533146..2534696	-	516	148662070	glpD1	MRA_2269	-	glycerol-3-phosphate dehydrogenase Glpd1
2314	 65.79	0	2534690..2535259	-	189	148662071	-	MRA_2270	-	putative transcriptional regulatory protein
2315	 68.24	0	2535307..2536896	+	529	148662072	-	MRA_2271	-	putative flavoprotein
2316	 63.87	0	2536893..2537822	+	309	148662073	-	MRA_2272	-	diacylglycerol kinase
2317	 60.71	-1	2537888..2538391	+	167	148662074	-	MRA_2273	-	putative secreted protein
2318	 64.04	0	2538424..2538879	-	151	148662075	-	MRA_2274	-	putative integral membrane protein
2319	 66.15	0	2538884..2539078	-	64	148662076	-	MRA_2275	-	hypothetical protein
2320	 63.47	0	2538998..2539216	+	72	148662077	-	MRA_2276	-	hypothetical protein
2321	 67.23	0	2539245..2539778	-	177	148662078	-	MRA_2277	-	hypothetical protein
2322	 68.50	0	2539908..2540726	-	272	148662079	-	MRA_2278	-	hypothetical protein
2323	 64.69	0	2540740..2541801	-	353	148662080	-	MRA_2279	-	putative transcriptional regulatory protein
2324	 66.57	0	2542149..2543234	+	361	148662081	adhE2	MRA_2280	-	zinc-dependent alcohol dehydrogenase AdhE2
2325	 66.67	0	2543234..2543869	+	211	148662082	-	MRA_2281	-	hypothetical protein
65.43	MEAN

3.37	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.