IslandPathversion 1.0

IslandPath Analysis: Mycobacterium tuberculosis H37Ra



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 65.43 STD DEV: 3.37
Mycobacterium tuberculosis H37Ra, complete genome - 1..4419977
4034 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2196	 65.74	0	2407232..2408308	+	358	148661953	lppL	MRA_2152	-	putative lipoprotein LppL
2197	 68.72	0	2408622..2409695	+	357	148661954	pyrD	MRA_2153	-	dihydroorotate dehydrogenase 2
2198	 65.54	0	2409700..2410230	-	176	148661955	-	MRA_2154	-	hypothetical protein
2199	 65.11	0	2410278..2411624	-	448	148661956	-	MRA_2155	-	hypothetical protein
2200	 57.86	-2	2412095..2412412	-	105	148661957	-	MRA_2156	-	hypothetical protein
2201	 60.65	-1	2412409..2412624	-	71	148661958	-	MRA_2157	-	hypothetical protein
2202	 67.42	0	2412879..2413937	+	352	148661959	-	MRA_2158	-	hypothetical protein
2203	 65.55	0	2414067..2414423	-	118	148661960	-	MRA_2159	-	putative transmembrane protein
2204	 64.75	0	2414518..2415300	-	260	148661961	wag31	MRA_2160	-	hypothetical protein
2205	 59.11	-1	2415568..2415858	-	96	148661962	-	MRA_2161	-	putative transmembrane protein
2206	 64.88	0	2416020..2416745	-	241	148661963	-	MRA_2162	-	hypothetical protein
2207	 63.58	0	2416742..2417518	-	258	148661964	-	MRA_2163	-	hypothetical protein
2208	 68.53	0	2417524..2418276	-	250	148661965	yfiH	MRA_2164	-	hypothetical protein
2209	 66.32	0	2418287..2419426	-	379	148661966	ftsZ	MRA_2165	-	cell division protein FtsZ
2210	 68.15	0	2419599..2420543	-	314	148661967	ftsQ	MRA_2166	-	cell division protein FtsQ
2211	 67.61	0	2420540..2422024	-	494	148661968	murC	MRA_2167	-	UDP-N-acetylmuramate--L-alanine ligase
2212	 74.05	+2	2422021..2423253	-	410	148661969	murG	MRA_2168	-	N-acetylglucosaminyl transferase
2213	 67.49	0	2423250..2424824	-	524	148661970	ftsW	MRA_2169	-	cell division protein FtsW
2214	 70.50	+1	2424836..2426296	-	486	148661971	murD	MRA_2170	-	UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
2215	 65.46	0	2426298..2427377	-	359	148661972	mraY	MRA_2171	-	phospho-N-acetylmuramoyl-pentapeptide-transferase
2216	 71.56	+1	2427374..2428906	-	510	148661973	murF	MRA_2172	-	UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate-D-alanyl-D-alanyl ligase MurF
2217	 73.07	+2	2428903..2430510	-	535	148661974	murE	MRA_2173	-	UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
2218	 73.04	+2	2430533..2431567	-	344	148661975	-	MRA_2174	-	hypothetical protein
2219	 71.64	+1	2431564..2431905	-	113	148661976	-	MRA_2175	-	hypothetical protein
2220	 72.90	+2	2432173..2433039	-	288	148661977	-	MRA_2176	-	hypothetical protein
2221	 76.80	+2	2433142..2434740	-	532	148661978	-	MRA_2177	-	PE-PGRS family protein
2222	 65.88	0	2434950..2436989	-	679	148661979	pbpB	MRA_2178	-	penicillin-binding membrane protein PbpB
2223	 71.95	+1	2436986..2438140	-	384	148661980	-	MRA_2179	-	hypothetical protein
2224	 65.16	0	2438137..2439327	-	396	148661981	mraW	MRA_2180	-	S-adenosyl-methyltransferase MraW
2225	 62.27	0	2439329..2439760	-	143	148661982	-	MRA_2181	-	cell division protein MraZ
2226	 63.84	0	2440061..2440945	-	294	148661983	-	MRA_2182	-	IS6110 transposase
2227	 65.75	0	2440996..2441322	-	108	148661984	-	MRA_2183	-	IS6110 hypothetical protein
2228	 62.22	0	2441467..2441871	-	134	148661985	-	MRA_2184	-	putative transmembrane protein
2229	 67.15	0	2442137..2442757	+	206	148661986	-	MRA_2185	-	hypothetical protein
2230	 64.91	0	2442853..2443536	+	227	148661987	lppM	MRA_2186	-	putative lipoprotein LppM
2231	 63.36	0	2443533..2444438	-	301	148661988	-	MRA_2187	-	hypothetical protein
2232	 67.61	0	2444749..2445807	+	352	148661989	idsA2	MRA_2188	-	putative geranylgeranyl pyrophosphate synthetase IdsA2
2233	 64.73	0	2445811..2447361	+	516	148661990	-	MRA_2189	-	putative integral membrane protein
2234	 66.67	0	2447348..2447788	-	146	148661991	-	MRA_2190	-	hypothetical protein
2235	 65.00	0	2447843..2449042	+	399	148661992	pknL	MRA_2191	-	serine/threonine protein kinase
2236	 65.02	0	2449184..2449849	-	221	148661993	-	MRA_2192	-	putative transposase
2237	 64.22	0	2450234..2451622	-	462	148661994	aroG	MRA_2193	-	putative phospho-2-dehydro-3-deoxyheptonate aldolase
2238	 65.48	0	2451713..2452219	-	168	148661995	-	MRA_2194	-	hypothetical protein
2239	 64.64	0	2452229..2453116	-	295	148661996	-	MRA_2195	-	putative integral membrane protein
2240	 65.89	0	2453204..2454487	+	427	148661997	-	MRA_2196	-	putative integral membrane protein
2241	 60.08	-1	2454488..2455231	-	247	148661998	-	MRA_2197	-	1-acylglycerol-3-phosphate O-acyltransferase
2242	 67.17	0	2455317..2455712	-	131	148661999	-	MRA_2198	-	hypothetical protein
2243	 67.11	0	2455709..2456848	-	379	148662000	-	MRA_2199	-	hypothetical protein
2244	 57.01	-2	2456968..2457402	-	144	148662001	-	MRA_2200	-	hypothetical protein
2245	 62.31	0	2457507..2457896	-	129	148662002	-	MRA_2201	-	hypothetical protein
2246	 63.62	0	2458062..2459864	+	600	148662003	fadD15	MRA_2202	-	long-chain-fatty-acid--CoA ligase
2247	 68.31	0	2459895..2461052	-	385	148662004	-	MRA_2203	-	glycosyl transferase
2248	 68.60	0	2461149..2461922	-	257	148662005	-	MRA_2204	-	hypothetical protein
2249	 66.41	0	2462017..2463174	-	385	148662006	-	MRA_2205	-	hypothetical protein
2250	 69.05	+1	2463360..2463611	-	83	148662007	-	MRA_2206	-	hypothetical protein
2251	 69.66	+1	2463721..2465658	+	645	148662008	-	MRA_2207	-	hypothetical protein
2252	 69.63	+1	2465533..2466645	-	370	148662009	trpD	MRA_2208	-	anthranilate phosphoribosyltransferase
2253	 58.66	-2	2466803..2467414	+	203	148662010	ctaE	MRA_2209	-	cytochrome c oxidase subunit III
2254	 64.53	0	2467455..2468297	+	280	148662011	qcrC	MRA_2210	-	cytochrome c family protein
2255	 62.25	0	2468294..2469583	+	429	148662012	qcrA	MRA_2211	-	putative iron-sulfur protein
2256	 62.48	0	2469580..2471229	+	549	148662013	qcrB	MRA_2212	-	ubiquinol-cytochrome C reductase QcrB
2257	 66.98	0	2471406..2472050	-	214	148662014	-	MRA_2213	-	putative transmembrane protein
2258	 66.56	0	2472050..2472949	-	299	148662015	mmpS3	MRA_2214	-	putative membrane protein MmpS3
2259	 62.38	0	2473135..2473554	-	139	148662016	-	MRA_2215	-	putative integral membrane protein
2260	 59.62	-1	2473562..2474653	-	363	148662017	ctaC	MRA_2216	-	cytochrome c oxidase subunit II
2261	 66.11	0	2474899..2476857	+	652	148662018	asnB	MRA_2217	-	putative asparagine synthetase
2262	 63.79	0	2476955..2477929	-	324	148662019	cbhK	MRA_2218	-	carbohydrate kinase CbhK
2263	 66.38	0	2478133..2478825	+	230	148662020	-	MRA_2219	-	hypothetical protein
2264	 62.46	0	2478833..2479189	-	118	148662021	-	MRA_2220	-	hypothetical protein
2265	 68.69	0	2479289..2480575	-	428	148662022	-	MRA_2221	-	hypothetical protein
2266	 66.53	0	2480524..2481234	+	236	148662023	-	MRA_2222	-	putative transmembrane protein
2267	 72.19	+2	2481313..2482398	+	361	148662024	cobT	MRA_2223	-	nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase
2268	 71.33	+1	2482395..2483144	+	249	148662025	cobS	MRA_2224	-	cobalamin synthase
2269	 66.86	0	2483302..2484840	+	512	148662026	-	MRA_2225	-	putative integral membrane protein
2270	 65.40	0	2484766..2485872	-	368	148662027	ilvE	MRA_2226	-	branched-chain amino acid aminotransferase
2271	 66.84	0	2485944..2487083	-	379	148662028	gcvT	MRA_2227	-	glycine cleavage system aminomethyltransferase T
2272	 67.28	0	2487092..2488228	+	378	148662029	-	MRA_2228	-	hypothetical protein
2273	 67.38	0	2488240..2489787	+	515	148662030	pepB	MRA_2229	-	leucyl aminopeptidase
2274	 66.10	0	2489825..2491603	-	592	148662031	ephD	MRA_2230	-	short chain dehydrogenase
2275	 67.69	0	2491867..2493528	+	553	148662032	dlaT	MRA_2231	-	dihydrolipoamide acetyltransferase
2276	 67.77	0	2493528..2494433	+	301	148662033	-	MRA_2232	-	hypothetical protein
2277	 68.69	0	2494486..2495178	+	230	148662034	lipB	MRA_2233	-	lipoyltransferase
2278	 67.52	0	2495175..2496110	+	311	148662035	lipA	MRA_2234	-	lipoyl synthase
2279	 66.93	0	2496137..2496889	+	250	148662036	-	MRA_2235	-	putative transmembrane protein
2280	 68.09	0	2496896..2497318	-	140	148662037	-	MRA_2236	-	hypothetical protein
2281	 61.24	-1	2497517..2498953	+	478	148662038	glnA1	MRA_2237	-	glutamine synthetase
2282	 68.51	0	2499271..2502255	-	994	148662039	glnE	MRA_2238	-	putative glutamate-ammonia-ligase adenylyltransferase
2283	 63.83	0	2502304..2503644	-	446	148662040	glnA2	MRA_2239	-	glutamine synthetase
2284	 67.11	0	2503739..2505301	-	520	148662041	-	MRA_2240	-	proteinase
2285	 65.71	0	2505363..2506925	-	520	148662042	-	MRA_2241	-	putative exported protease
2286	 68.92	+1	2507127..2507348	-	73	148662043	-	MRA_2242	-	hypothetical protein
2287	 67.26	0	2507644..2508489	+	281	148662044	panB	MRA_2243	-	3-methyl-2-oxobutanoate hydroxymethyltransferase
2288	 67.25	0	2508734..2510275	+	513	148662045	-	MRA_2244	-	hypothetical protein
2289	 65.96	0	2510768..2511052	+	94	148662046	-	MRA_2245	-	hypothetical protein
2290	 60.73	-1	2511238..2511540	-	100	148662047	-	MRA_2246	-	hypothetical protein
2291	 65.94	0	2511546..2512640	-	364	148662048	-	MRA_2247	-	bifunctional RNase H/acid phosphatase
2292	 65.45	0	2512637..2513374	-	245	148662049	-	MRA_2248	-	hypothetical protein
2293	 68.33	0	2513371..2514510	-	379	148662050	-	MRA_2249	-	hypothetical protein
2294	 67.31	0	2514507..2515601	-	364	148662051	cobC	MRA_2250	-	hypothetical protein
2295	 63.44	0	2515616..2515987	-	123	148662052	-	MRA_2251	-	hypothetical protein
65.43	MEAN

3.37	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.