IslandPathversion 1.0

IslandPath Analysis: Mycobacterium tuberculosis H37Ra



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 65.43 STD DEV: 3.37
Mycobacterium tuberculosis H37Ra, complete genome - 1..4419977
4034 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2131	 66.91	0	2340893..2341306	+	137	148661888	-	MRA_2088	-	hypothetical protein
2132	 68.31	0	2341316..2342779	-	487	148661889	-	MRA_2089	-	hypothetical protein
2133	 62.30	0	2342937..2343188	-	83	148661890	-	MRA_2090	-	hypothetical protein
2134	 64.81	0	2343223..2344194	-	323	148661891	-	MRA_2091	-	putative transmembrane protein
2135	 64.67	0	2344195..2344494	-	99	148661892	-	MRA_2091A	-	hypothetical protein
2136	 61.90	-1	2344959..2345273	+	104	148661893	-	MRA_2092	-	hypothetical protein
2137	 64.33	0	2345255..2347225	+	656	148661894	-	MRA_2093	-	hypothetical protein
2138	 61.35	-1	2347206..2347769	+	187	148661895	lppJ	MRA_2094	-	putative lipoprotein LppJ
2139	 63.66	0	2347690..2348088	+	132	148661896	-	MRA_2095	-	hypothetical protein
2140	 65.53	0	2347965..2348405	-	146	148661897	-	MRA_2096	-	putative transmembrane protein
2141	 67.17	0	2348609..2350774	+	721	148661898	-	MRA_2098	-	hypothetical protein
2142	 70.79	+1	2350771..2351715	+	314	148661899	-	MRA_2099	-	hypothetical protein
2143	 65.70	0	2351708..2352844	+	378	148661900	-	MRA_2100	-	hypothetical protein
2144	 64.71	0	2352927..2353232	+	101	148661901	-	MRA_2101	-	putative transposase
2145	 66.01	0	2353211..2353816	+	201	148661902	-	MRA_2102	-	hypothetical protein
2146	 65.03	0	2354311..2356080	+	589	148661903	pknJ	MRA_2103	-	serine/threonine protein kinase
2147	 66.31	0	2356097..2357224	-	375	148661904	pepE	MRA_2104	-	putative Xaa-Pro dipeptidase
2148	 69.37	+1	2357273..2358454	+	393	148661905	-	MRA_2105	-	putative 5'-3' exonuclease
2149	 66.26	0	2358458..2359192	-	244	148661906	-	MRA_2106	-	hypothetical protein
2150	 67.07	0	2359234..2361954	-	906	148661907	helY	MRA_2107	-	ATP-dependent DNA helicase HelY
2151	 63.11	0	2362003..2362929	-	308	148661908	tatC	MRA_2108	-	twin arginine-targeting protein translocase TatC
2152	 61.51	-1	2362946..2363197	-	83	148661909	tatA	MRA_2109	-	twin argininte translocase protein A
2153	 68.56	0	2363265..2364215	-	316	148661910	-	MRA_2110	-	hypothetical protein
2154	 67.27	0	2364212..2365210	-	332	148661911	-	MRA_2111	-	hypothetical protein
2155	 63.65	0	2365219..2366577	-	452	148661912	-	MRA_2112	-	hypothetical protein
2156	 75.62	+2	2366826..2367875	-	349	148661913	-	MRA_2113	-	PE-PGRS family protein
2157	 68.72	0	2368291..2369943	+	550	148661914	-	MRA_2114	-	hypothetical protein
2158	 69.33	+1	2370142..2373183	+	1013	148661915	helZ	MRA_2115	-	putative helicase HelZ
2159	 68.76	0	2373293..2374009	+	238	148661916	-	MRA_2116	-	hypothetical protein
2160	 65.75	0	2373988..2374422	-	144	148661917	-	MRA_2117	-	hypothetical protein
2161	 65.88	0	2374429..2374683	-	84	148661918	-	MRA_2118	-	hypothetical protein
2162	 65.12	0	2374699..2374956	-	85	148661919	-	MRA_2119	-	hypothetical protein
2163	 65.75	0	2375367..2375693	+	108	148661920	-	MRA_2120	-	IS6110 hypothetical protein
2164	 63.84	0	2375744..2376628	+	294	148661921	-	MRA_2121	-	IS6110 transposase
2165	 56.90	-2	2377261..2377557	+	98	148661922	-	MRA_2122	-	PE family protein
2166	 58.61	-2	2377613..2378344	+	243	148661923	-	MRA_2123	-	PPE family protein
2167	 63.45	0	2378885..2379631	-	248	148661924	prcA	MRA_2124	-	proteasome subunit alpha
2168	 63.58	0	2379628..2380503	-	291	148661925	prcB	MRA_2125	-	proteasome subunit beta
2169	 65.13	0	2380500..2380694	-	64	148661926	-	MRA_2126	-	hypothetical protein
2170	 67.33	0	2380807..2382471	-	554	148661927	-	MRA_2127	-	hypothetical protein
2171	 67.00	0	2382532..2383725	+	397	148661928	-	MRA_2128	-	putative integral membrane protein
2172	 63.62	0	2383736..2384359	+	207	148661929	-	MRA_2129	-	hypothetical protein
2173	 62.08	0	2384363..2386192	-	609	148661930	-	MRA_2130	-	AAA ATPase family protein
2174	 66.67	0	2386473..2387042	+	189	148661931	lppK	MRA_2131	-	putative lipoprotein LppK
2175	 65.99	0	2387050..2387343	+	97	148661932	-	MRA_2132	-	hypothetical protein
2176	 67.14	0	2387372..2388214	-	280	148661933	-	MRA_2133	-	putative RNA methyltransferase
2177	 66.91	0	2388288..2389124	+	278	148661934	-	MRA_2134	-	hypothetical protein
2178	 66.87	0	2389147..2389629	-	160	148661935	-	MRA_2135	-	putative integral membrane protein
2179	 65.38	0	2389708..2390562	-	284	148661936	hisG	MRA_2136	-	ATP phosphoribosyltransferase
2180	 63.12	0	2390565..2390846	-	93	148661937	hisE	MRA_2137	-	phosphoribosyl-ATP pyrophosphatase
2181	 66.88	0	2390973..2392394	+	473	148661938	-	MRA_2138	-	PPE family protein
2182	 65.13	0	2392391..2395969	-	1192	148661939	metH	MRA_2139	-	hypothetical protein
2183	 68.60	0	2396195..2397073	+	292	148661940	-	MRA_2140	-	hypothetical protein
2184	 77.82	+2	2397104..2397874	-	256	148661941	-	MRA_2140A	-	PE-PGRS family protein
2185	 62.11	0	2398518..2399987	+	489	148661942	ansP1	MRA_2141	-	putative L-asparagine permease AnsP1
2186	 58.82	-1	2399987..2400190	+	67	148661943	-	MRA_2142	-	putative transmembrane protein
2187	 65.31	0	2400210..2401091	-	293	148661944	-	MRA_2143	-	short chain dehydrogenase
2188	 65.62	0	2401117..2402361	-	414	148661945	cysS1	MRA_2144	-	cysteinyl-tRNA synthetase
2189	 68.28	0	2402419..2403222	-	267	148661946	cysQ	MRA_2145	-	monophosphatase CysQ
2190	 62.34	0	2403313..2403543	+	76	148661947	-	MRA_2146	-	hypothetical protein
2191	 67.17	0	2403753..2404541	-	262	148661948	-	MRA_2147	-	hypothetical protein
2192	 67.01	0	2404552..2405139	-	195	148661949	-	MRA_2148	-	hypothetical protein
2193	 67.93	0	2405203..2405913	-	236	148661950	-	MRA_2149	-	hypothetical protein
2194	 63.18	0	2405910..2406740	-	276	148661951	uppP	MRA_2150	-	undecaprenyl pyrophosphate phosphatase
2195	 59.66	-1	2406804..2407217	-	137	148661952	-	MRA_2151	-	hypothetical protein
2196	 65.74	0	2407232..2408308	+	358	148661953	lppL	MRA_2152	-	putative lipoprotein LppL
2197	 68.72	0	2408622..2409695	+	357	148661954	pyrD	MRA_2153	-	dihydroorotate dehydrogenase 2
2198	 65.54	0	2409700..2410230	-	176	148661955	-	MRA_2154	-	hypothetical protein
2199	 65.11	0	2410278..2411624	-	448	148661956	-	MRA_2155	-	hypothetical protein
2200	 57.86	-2	2412095..2412412	-	105	148661957	-	MRA_2156	-	hypothetical protein
2201	 60.65	-1	2412409..2412624	-	71	148661958	-	MRA_2157	-	hypothetical protein
2202	 67.42	0	2412879..2413937	+	352	148661959	-	MRA_2158	-	hypothetical protein
2203	 65.55	0	2414067..2414423	-	118	148661960	-	MRA_2159	-	putative transmembrane protein
2204	 64.75	0	2414518..2415300	-	260	148661961	wag31	MRA_2160	-	hypothetical protein
2205	 59.11	-1	2415568..2415858	-	96	148661962	-	MRA_2161	-	putative transmembrane protein
2206	 64.88	0	2416020..2416745	-	241	148661963	-	MRA_2162	-	hypothetical protein
2207	 63.58	0	2416742..2417518	-	258	148661964	-	MRA_2163	-	hypothetical protein
2208	 68.53	0	2417524..2418276	-	250	148661965	yfiH	MRA_2164	-	hypothetical protein
2209	 66.32	0	2418287..2419426	-	379	148661966	ftsZ	MRA_2165	-	cell division protein FtsZ
2210	 68.15	0	2419599..2420543	-	314	148661967	ftsQ	MRA_2166	-	cell division protein FtsQ
2211	 67.61	0	2420540..2422024	-	494	148661968	murC	MRA_2167	-	UDP-N-acetylmuramate--L-alanine ligase
2212	 74.05	+2	2422021..2423253	-	410	148661969	murG	MRA_2168	-	N-acetylglucosaminyl transferase
2213	 67.49	0	2423250..2424824	-	524	148661970	ftsW	MRA_2169	-	cell division protein FtsW
2214	 70.50	+1	2424836..2426296	-	486	148661971	murD	MRA_2170	-	UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
2215	 65.46	0	2426298..2427377	-	359	148661972	mraY	MRA_2171	-	phospho-N-acetylmuramoyl-pentapeptide-transferase
2216	 71.56	+1	2427374..2428906	-	510	148661973	murF	MRA_2172	-	UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate-D-alanyl-D-alanyl ligase MurF
2217	 73.07	+2	2428903..2430510	-	535	148661974	murE	MRA_2173	-	UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
2218	 73.04	+2	2430533..2431567	-	344	148661975	-	MRA_2174	-	hypothetical protein
2219	 71.64	+1	2431564..2431905	-	113	148661976	-	MRA_2175	-	hypothetical protein
2220	 72.90	+2	2432173..2433039	-	288	148661977	-	MRA_2176	-	hypothetical protein
2221	 76.80	+2	2433142..2434740	-	532	148661978	-	MRA_2177	-	PE-PGRS family protein
2222	 65.88	0	2434950..2436989	-	679	148661979	pbpB	MRA_2178	-	penicillin-binding membrane protein PbpB
2223	 71.95	+1	2436986..2438140	-	384	148661980	-	MRA_2179	-	hypothetical protein
2224	 65.16	0	2438137..2439327	-	396	148661981	mraW	MRA_2180	-	S-adenosyl-methyltransferase MraW
2225	 62.27	0	2439329..2439760	-	143	148661982	-	MRA_2181	-	cell division protein MraZ
2226	 63.84	0	2440061..2440945	-	294	148661983	-	MRA_2182	-	IS6110 transposase
2227	 65.75	0	2440996..2441322	-	108	148661984	-	MRA_2183	-	IS6110 hypothetical protein
2228	 62.22	0	2441467..2441871	-	134	148661985	-	MRA_2184	-	putative transmembrane protein
2229	 67.15	0	2442137..2442757	+	206	148661986	-	MRA_2185	-	hypothetical protein
2230	 64.91	0	2442853..2443536	+	227	148661987	lppM	MRA_2186	-	putative lipoprotein LppM
65.43	MEAN

3.37	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.