IslandPathversion 1.0

IslandPath Analysis: Mycobacterium tuberculosis H37Ra



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 65.43 STD DEV: 3.37
Mycobacterium tuberculosis H37Ra, complete genome - 1..4419977
4034 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2099	 65.79	0	2297784..2298581	-	265	148661856	-	MRA_2057	-	hypothetical protein
2100	 64.71	0	2298581..2299141	-	186	148661857	pncA	MRA_2058	-	pyrazinamidase/nicotinamidase
2101	 64.15	0	2299182..2299499	-	105	148661858	-	MRA_2059	-	hypothetical protein
2102	 65.49	0	2299585..2301120	-	511	148661859	lipT	MRA_2060	-	carboxylesterase LipT
2103	 70.32	+1	2301169..2301825	+	218	148661860	lppI	MRA_2061	-	putative lipoprotein LppI
2104	 67.37	0	2301862..2304426	-	854	148661861	-	MRA_2062	-	hypothetical protein
2105	 67.46	0	2304431..2316886	-	4151	148661862	pks12	MRA_2063	-	polyketide synthase Pks12
2106	 70.67	+1	2317193..2317417	-	74	148661863	-	MRA_2064	-	hypothetical protein
2107	 65.18	0	2317721..2318056	+	111	148661864	-	MRA_2065	-	hypothetical protein
2108	 67.01	0	2318031..2320655	-	874	148661865	ppm1	MRA_2066	-	polyprenol-monophosphomannose synthase Ppm1
2109	 71.21	+1	2320813..2322417	-	534	148661866	-	MRA_2067	-	hypothetical protein
2110	 67.23	0	2322422..2322949	-	175	148661867	fxsA	MRA_2068	-	FxsA
2111	 65.27	0	2323025..2323738	+	237	148661868	-	MRA_2069	-	hypothetical protein
2112	 63.30	0	2323987..2324253	-	88	148661869	rpsR2	MRA_2070	-	30S ribosomal protein S18
2113	 69.28	+1	2324254..2324559	-	101	148661870	rpsN	MRA_2071	-	30S ribosomal protein S14
2114	 63.03	0	2324561..2324725	-	54	148661871	rpmG	MRA_2072	-	50S ribosomal protein L33
2115	 64.14	0	2324725..2324961	-	78	148661872	rpmB	MRA_2073	-	50S ribosomal protein L28
2116	 67.32	0	2325074..2326609	+	511	148661873	-	MRA_2074	-	hypothetical protein
2117	 64.69	0	2326581..2326985	-	134	148661874	-	MRA_2074A	-	hypothetical protein
2118	 69.18	+1	2327069..2330653	-	1194	148661875	cobN	MRA_2075	-	cobaltochelatase
2119	 67.09	0	2330731..2330964	+	77	148661876	-	MRA_2076	-	hypothetical protein
2120	 70.32	+1	2330957..2331367	+	136	148661877	-	MRA_2077	-	hypothetical protein
2121	 72.89	+2	2331351..2332442	+	363	148661878	cobG	MRA_2078	-	CobG-related protein
2122	 72.25	+2	2332452..2333078	+	208	148661879	cobH	MRA_2079	-	precorrin-8X methylmutase
2123	 70.73	+1	2333075..2334601	+	508	148661880	cobI	MRA_2080	-	S-adenosyl-L-methionine--precorrin-2 methyltransferase/precorrin-3b c17-methyltransferase
2124	 59.48	-1	2334547..2335770	-	407	148661881	-	MRA_2081	-	hypothetical protein
2125	 66.02	0	2335786..2336709	-	307	148661882	blaC	MRA_2082	-	beta-lactamase
2126	 67.74	0	2336844..2337401	+	185	148661883	sigC	MRA_2083	-	RNA polymerase sigma factor SigC
2127	 66.67	0	2337391..2338125	-	244	148661884	cobK	MRA_2084	-	cobalt-precorrin-6x reductase
2128	 67.33	0	2338122..2338877	-	251	148661885	cobM	MRA_2085	-	precorrin-4 c11-methyltransferase
2129	 68.20	0	2338874..2340046	-	390	148661886	cobL	MRA_2086	-	precorrin-6y c5,15-methyltransferase
2130	 70.93	+1	2340114..2340863	-	249	148661887	-	MRA_2087	-	putative short-chain type dehydrogenase/reductase
2131	 66.91	0	2340893..2341306	+	137	148661888	-	MRA_2088	-	hypothetical protein
2132	 68.31	0	2341316..2342779	-	487	148661889	-	MRA_2089	-	hypothetical protein
2133	 62.30	0	2342937..2343188	-	83	148661890	-	MRA_2090	-	hypothetical protein
2134	 64.81	0	2343223..2344194	-	323	148661891	-	MRA_2091	-	putative transmembrane protein
2135	 64.67	0	2344195..2344494	-	99	148661892	-	MRA_2091A	-	hypothetical protein
2136	 61.90	-1	2344959..2345273	+	104	148661893	-	MRA_2092	-	hypothetical protein
2137	 64.33	0	2345255..2347225	+	656	148661894	-	MRA_2093	-	hypothetical protein
2138	 61.35	-1	2347206..2347769	+	187	148661895	lppJ	MRA_2094	-	putative lipoprotein LppJ
2139	 63.66	0	2347690..2348088	+	132	148661896	-	MRA_2095	-	hypothetical protein
2140	 65.53	0	2347965..2348405	-	146	148661897	-	MRA_2096	-	putative transmembrane protein
2141	 67.17	0	2348609..2350774	+	721	148661898	-	MRA_2098	-	hypothetical protein
2142	 70.79	+1	2350771..2351715	+	314	148661899	-	MRA_2099	-	hypothetical protein
2143	 65.70	0	2351708..2352844	+	378	148661900	-	MRA_2100	-	hypothetical protein
2144	 64.71	0	2352927..2353232	+	101	148661901	-	MRA_2101	-	putative transposase
2145	 66.01	0	2353211..2353816	+	201	148661902	-	MRA_2102	-	hypothetical protein
2146	 65.03	0	2354311..2356080	+	589	148661903	pknJ	MRA_2103	-	serine/threonine protein kinase
2147	 66.31	0	2356097..2357224	-	375	148661904	pepE	MRA_2104	-	putative Xaa-Pro dipeptidase
2148	 69.37	+1	2357273..2358454	+	393	148661905	-	MRA_2105	-	putative 5'-3' exonuclease
2149	 66.26	0	2358458..2359192	-	244	148661906	-	MRA_2106	-	hypothetical protein
2150	 67.07	0	2359234..2361954	-	906	148661907	helY	MRA_2107	-	ATP-dependent DNA helicase HelY
2151	 63.11	0	2362003..2362929	-	308	148661908	tatC	MRA_2108	-	twin arginine-targeting protein translocase TatC
2152	 61.51	-1	2362946..2363197	-	83	148661909	tatA	MRA_2109	-	twin argininte translocase protein A
2153	 68.56	0	2363265..2364215	-	316	148661910	-	MRA_2110	-	hypothetical protein
2154	 67.27	0	2364212..2365210	-	332	148661911	-	MRA_2111	-	hypothetical protein
2155	 63.65	0	2365219..2366577	-	452	148661912	-	MRA_2112	-	hypothetical protein
2156	 75.62	+2	2366826..2367875	-	349	148661913	-	MRA_2113	-	PE-PGRS family protein
2157	 68.72	0	2368291..2369943	+	550	148661914	-	MRA_2114	-	hypothetical protein
2158	 69.33	+1	2370142..2373183	+	1013	148661915	helZ	MRA_2115	-	putative helicase HelZ
2159	 68.76	0	2373293..2374009	+	238	148661916	-	MRA_2116	-	hypothetical protein
2160	 65.75	0	2373988..2374422	-	144	148661917	-	MRA_2117	-	hypothetical protein
2161	 65.88	0	2374429..2374683	-	84	148661918	-	MRA_2118	-	hypothetical protein
2162	 65.12	0	2374699..2374956	-	85	148661919	-	MRA_2119	-	hypothetical protein
2163	 65.75	0	2375367..2375693	+	108	148661920	-	MRA_2120	-	IS6110 hypothetical protein
2164	 63.84	0	2375744..2376628	+	294	148661921	-	MRA_2121	-	IS6110 transposase
2165	 56.90	-2	2377261..2377557	+	98	148661922	-	MRA_2122	-	PE family protein
2166	 58.61	-2	2377613..2378344	+	243	148661923	-	MRA_2123	-	PPE family protein
2167	 63.45	0	2378885..2379631	-	248	148661924	prcA	MRA_2124	-	proteasome subunit alpha
2168	 63.58	0	2379628..2380503	-	291	148661925	prcB	MRA_2125	-	proteasome subunit beta
2169	 65.13	0	2380500..2380694	-	64	148661926	-	MRA_2126	-	hypothetical protein
2170	 67.33	0	2380807..2382471	-	554	148661927	-	MRA_2127	-	hypothetical protein
2171	 67.00	0	2382532..2383725	+	397	148661928	-	MRA_2128	-	putative integral membrane protein
2172	 63.62	0	2383736..2384359	+	207	148661929	-	MRA_2129	-	hypothetical protein
2173	 62.08	0	2384363..2386192	-	609	148661930	-	MRA_2130	-	AAA ATPase family protein
2174	 66.67	0	2386473..2387042	+	189	148661931	lppK	MRA_2131	-	putative lipoprotein LppK
2175	 65.99	0	2387050..2387343	+	97	148661932	-	MRA_2132	-	hypothetical protein
2176	 67.14	0	2387372..2388214	-	280	148661933	-	MRA_2133	-	putative RNA methyltransferase
2177	 66.91	0	2388288..2389124	+	278	148661934	-	MRA_2134	-	hypothetical protein
2178	 66.87	0	2389147..2389629	-	160	148661935	-	MRA_2135	-	putative integral membrane protein
2179	 65.38	0	2389708..2390562	-	284	148661936	hisG	MRA_2136	-	ATP phosphoribosyltransferase
2180	 63.12	0	2390565..2390846	-	93	148661937	hisE	MRA_2137	-	phosphoribosyl-ATP pyrophosphatase
2181	 66.88	0	2390973..2392394	+	473	148661938	-	MRA_2138	-	PPE family protein
2182	 65.13	0	2392391..2395969	-	1192	148661939	metH	MRA_2139	-	hypothetical protein
2183	 68.60	0	2396195..2397073	+	292	148661940	-	MRA_2140	-	hypothetical protein
2184	 77.82	+2	2397104..2397874	-	256	148661941	-	MRA_2140A	-	PE-PGRS family protein
2185	 62.11	0	2398518..2399987	+	489	148661942	ansP1	MRA_2141	-	putative L-asparagine permease AnsP1
2186	 58.82	-1	2399987..2400190	+	67	148661943	-	MRA_2142	-	putative transmembrane protein
2187	 65.31	0	2400210..2401091	-	293	148661944	-	MRA_2143	-	short chain dehydrogenase
2188	 65.62	0	2401117..2402361	-	414	148661945	cysS1	MRA_2144	-	cysteinyl-tRNA synthetase
2189	 68.28	0	2402419..2403222	-	267	148661946	cysQ	MRA_2145	-	monophosphatase CysQ
2190	 62.34	0	2403313..2403543	+	76	148661947	-	MRA_2146	-	hypothetical protein
2191	 67.17	0	2403753..2404541	-	262	148661948	-	MRA_2147	-	hypothetical protein
2192	 67.01	0	2404552..2405139	-	195	148661949	-	MRA_2148	-	hypothetical protein
2193	 67.93	0	2405203..2405913	-	236	148661950	-	MRA_2149	-	hypothetical protein
2194	 63.18	0	2405910..2406740	-	276	148661951	uppP	MRA_2150	-	undecaprenyl pyrophosphate phosphatase
2195	 59.66	-1	2406804..2407217	-	137	148661952	-	MRA_2151	-	hypothetical protein
2196	 65.74	0	2407232..2408308	+	358	148661953	lppL	MRA_2152	-	putative lipoprotein LppL
2197	 68.72	0	2408622..2409695	+	357	148661954	pyrD	MRA_2153	-	dihydroorotate dehydrogenase 2
2198	 65.54	0	2409700..2410230	-	176	148661955	-	MRA_2154	-	hypothetical protein
65.43	MEAN

3.37	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.