IslandPath Analysis: Mycobacterium tuberculosis H37Ra



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 65.43   STD DEV: 3.37
Mycobacterium tuberculosis H37Ra, complete genome - 1..4419977
4034 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1947	 61.73	-1	2153467..2154378	-	303	148661704	-	MRA_1908	-	hypothetical protein
1948	 66.67	0	2154383..2154814	-	143	148661705	-	MRA_1909	-	D-tyrosyl-tRNA deacylase
1949	 66.34	0	2154872..2155180	+	102	148661706	-	MRA_1909A	-	hypothetical protein
1950	 70.35	+1	2155146..2156177	-	343	148661707	lppD	MRA_1910	-	putative lipoprotein LppD
1951	 65.80	0	2156177..2157565	-	462	148661708	lipJ	MRA_1911	-	putative lignin peroxidase LipJ
1952	 65.97	0	2157594..2158886	+	430	148661709	cinA	MRA_1912	-	competence damage-inducible protein A
1953	 60.84	-1	2158938..2160206	-	422	148661710	nanT	MRA_1913	-	putative sialic acid-transport integral membrane protein NanT
1954	 58.27	-2	2160296..2160700	+	134	148661711	-	MRA_1914	-	hypothetical protein
1955	 64.58	0	2160886..2161317	+	143	148661712	-	MRA_1915	-	hypothetical protein
1956	 66.15	0	2161365..2162327	-	320	148661713	aao	MRA_1916	-	D-amino acid oxidase
1957	 64.76	0	2162357..2162827	-	156	148661714	-	MRA_1917	-	hypothetical protein
1958	 65.28	0	2163167..2163814	-	215	148661715	-	MRA_1918	-	hypothetical protein
1959	 64.60	0	2163821..2166043	-	740	148661716	katG	MRA_1919	-	catalase-peroxidase
1960	 62.25	0	2166081..2166533	-	150	148661717	furA	MRA_1920	-	ferric uptake regulation protein FurA
1961	 66.33	0	2166638..2167231	-	197	148661718	-	MRA_1921	-	phosphatidylethanolamine-binding protein
1962	 68.48	0	2167314..2167919	-	201	148661719	lppC	MRA_1922	-	putative lipoprotein LppC
1963	 65.17	0	2168019..2169023	-	334	148661720	fadB5	MRA_1923	-	oxidoreductase FadB5
1964	 65.07	0	2169123..2169875	+	250	148661721	-	MRA_1924	-	hypothetical protein
1965	 62.25	0	2169853..2170260	-	135	148661722	-	MRA_1925	-	hypothetical protein
1966	 65.40	0	2170395..2171498	+	367	148661723	aceAa	MRA_1926	-	isocitrate lyase AceAa
1967	 63.99	0	2171498..2172694	+	398	148661724	aceAb	MRA_1927	-	isocitrate lyase AceAb
1968	 59.75	-1	2172864..2177243	-	1459	148661725	-	MRA_1928	-	PPE family protein
1969	 60.46	-1	2177581..2180544	-	987	148661726	-	MRA_1929	-	PPE family protein
1970	 65.16	0	2180993..2181457	-	154	148661727	-	MRA_1930	-	hypothetical protein
1971	 63.66	0	2181555..2182418	+	287	148661728	-	MRA_1931	-	1-acyl-sn-glycerol-3-phosphate acyltransferase
1972	 62.89	0	2182456..2183727	-	423	148661729	lppF	MRA_1932	-	putative lipoprotein LppF
1973	 63.71	0	2183999..2185114	+	371	148661730	-	MRA_1933	-	putative peptidase
1974	 63.09	0	2185105..2186445	+	446	148661731	lipD	MRA_1934	-	putative lipase LipD
1975	 65.88	0	2186482..2186862	-	126	148661732	-	MRA_1935	-	hypothetical protein
1976	 64.90	0	2187019..2188881	+	620	148661733	fadD31	MRA_1936	-	acyl-CoA synthetase
1977	 61.88	-1	2188889..2189368	-	159	148661734	mpt63	MRA_1937	-	immunogenic protein Mpt63
1978	 65.50	0	2189605..2190378	+	257	148661735	-	MRA_1938	-	hypothetical protein
1979	 59.51	-1	2190382..2191149	-	255	148661736	-	MRA_1939	-	short chain dehydrogenase
1980	 61.27	-1	2191194..2191805	-	203	148661737	-	MRA_1940	-	hypothetical protein
1981	 70.29	+1	2191817..2192341	-	174	148661738	-	MRA_1940A	-	hypothetical protein
1982	 68.46	0	2192359..2193138	-	259	148661739	-	MRA_1941	-	putative transcriptional regulatory protein
1983	 65.46	0	2193271..2193768	+	165	148661740	tpx	MRA_1942	-	thiol peroxidase
1984	 68.96	+1	2193765..2194856	-	363	148661741	fadE18	MRA_1943	-	acyl-CoA dehydrogenase FadE18
1985	 69.84	+1	2194858..2196087	-	409	148661742	fadE17	MRA_1944	-	acyl-CoA dehydrogenase FadE17
1986	 66.98	0	2196102..2197058	-	318	148661743	echA13	MRA_1945	-	enoyl-CoA hydratase
1987	 65.68	0	2197283..2198392	+	369	148661744	-	MRA_1946	-	putative monooxygenase
1988	 65.91	0	2198395..2200914	+	839	148661745	-	MRA_1947	-	putative oxygenase
1989	 66.48	0	2200926..2201996	+	356	148661746	ephB	MRA_1948	-	epoxide hydrolase EphB
1990	 67.44	0	2201993..2202508	+	171	148661747	-	MRA_1949	-	putative dimerase
1991	 69.02	+1	2202505..2203566	+	353	148661748	ribA1	MRA_1950	-	3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II
1992	 67.32	0	2203563..2204333	+	256	148661749	-	MRA_1951	-	putative short-chain type dehydrogenase/reductase
1993	 65.45	0	2204543..2204872	-	109	148661750	-	MRA_1952	-	hypothetical protein
1994	 62.70	0	2204869..2205246	-	125	148661751	-	MRA_1953	-	hypothetical protein
1995	 65.82	0	2205243..2205833	-	196	148661752	-	MRA_1954	-	hypothetical protein
1996	 64.11	0	2205804..2207252	+	482	148661753	-	MRA_1955	-	hypothetical protein
1997	 62.69	0	2207407..2207859	-	150	148661754	lppG	MRA_1956	-	putative lipoprotein LppG
1998	 66.92	0	2207923..2208324	+	133	148661755	-	MRA_1957	-	hypothetical protein
1999	 51.28	-2	2208613..2208963	-	116	148661756	-	MRA_1958	-	hypothetical protein
2000	 63.01	0	2208974..2209876	-	300	148661757	-	MRA_1959	-	hypothetical protein
2001	 60.42	-1	2209897..2210088	-	63	148661758	-	MRA_1960	-	hypothetical protein
2002	 68.35	0	2210089..2210385	-	98	148661759	-	MRA_1961	-	hypothetical protein
2003	 65.74	0	2210625..2210840	+	71	148661760	-	MRA_1962	-	hypothetical protein
2004	 61.54	-1	2210837..2211148	+	103	148661761	-	MRA_1963	-	hypothetical protein
2005	 61.60	-1	2211483..2211995	+	170	148661762	-	MRA_1964	-	hypothetical protein
2006	 61.78	-1	2212037..2212486	+	149	148661763	-	MRA_1965	-	putative transcriptional regulatory protein
2007	 61.72	-1	2212483..2213028	+	181	148661764	-	MRA_1966	-	hypothetical protein
2008	 63.09	0	2212917..2213531	-	204	148661765	-	MRA_1967	-	hypothetical protein
2009	 61.95	-1	2213580..2213876	-	98	148661766	-	MRA_1968	-	hypothetical protein
2010	 66.67	0	2213873..2214124	-	83	148661767	-	MRA_1969	-	hypothetical protein
2011	 67.68	0	2214111..2214605	+	164	148661768	-	MRA_1970	-	hypothetical protein
2012	 61.52	-1	2214765..2215172	-	135	148661769	-	MRA_1971	-	hypothetical protein
2013	 63.74	0	2215176..2215448	-	90	148661770	-	MRA_1972	-	hypothetical protein
2014	 66.34	0	2215481..2216701	-	406	148661771	mce3R	MRA_1973	-	TetR family transcriptional regulator
2015	 53.88	-2	2216849..2217106	+	85	148661772	-	MRA_1974	-	hypothetical protein
2016	 64.04	0	2217600..2218397	+	265	148661773	yrbE3A	MRA_1975	-	integral membrane protein YrbE3A
2017	 65.69	0	2218407..2219222	+	271	148661774	yrbE3B	MRA_1976	-	integral membrane protein YrbE3b
2018	 65.96	0	2219227..2220504	+	425	148661775	mce3A	MRA_1977	-	MCE-family protein Mce3A
2019	 65.99	0	2220501..2221529	+	342	148661776	mce3B	MRA_1978	-	MCE-family protein Mce3B
2020	 68.13	0	2221526..2222758	+	410	148661777	mce3C	MRA_1979	-	MCE-family protein Mce3C
2021	 66.75	0	2222755..2224026	+	423	148661778	mce3D	MRA_1980	-	MCE-family protein Mce3D
2022	 66.49	0	2224023..2225156	+	377	148661779	lprM	MRA_1981	-	MCE family lipoprotein LprM
2023	 65.91	0	2225157..2226470	+	437	148661780	mce3F	MRA_1982	-	MCE-family protein Mce3F
2024	 67.36	0	2226492..2227067	+	191	148661781	-	MRA_1983	-	putative Mce associated membrane protein
2025	 68.94	+1	2227064..2227546	+	160	148661782	-	MRA_1984	-	putative Mce associated membrane protein
2026	 64.02	0	2227559..2227936	+	125	148661783	-	MRA_1985	-	hypothetical protein
2027	 64.41	0	2227952..2228617	+	221	148661784	-	MRA_1986	-	hypothetical protein
2028	 66.91	0	2228744..2229151	-	135	148661785	-	MRA_1987	-	hypothetical protein
2029	 65.33	0	2229654..2230700	+	348	148661786	-	MRA_1988	-	hypothetical protein
2030	 62.54	0	2230808..2231656	+	282	148661787	-	MRA_1989	-	hypothetical protein
2031	 59.82	-1	2231619..2233064	-	481	148661788	-	MRA_1990	-	amino acid permease
2032	 59.39	-1	2233243..2233929	-	228	148661789	mpt64	MRA_1991	-	immunogenic protein Mpt64
2033	 59.13	-1	2234120..2235088	-	322	148661790	nrdF	MRA_1992	-	ribonucleotide-diphosphate reductase subunit beta
2034	 66.43	0	2235313..2235732	-	139	148661791	-	MRA_1993	-	hypothetical protein
2035	 62.84	0	2235741..2236001	-	86	148661792	-	MRA_1994	-	hypothetical protein
2036	 64.88	0	2236144..2237820	+	558	148661793	-	MRA_1995	-	PE-PGRS family protein
2037	 62.23	0	2237808..2238461	-	217	148661794	cfp21	MRA_1996	-	cutinase precursor Cfp21
2038	 59.74	-1	2238576..2238806	+	76	148661795	-	MRA_1997	-	PE-PGRS family protein
2039	 65.02	0	2238891..2239802	-	303	148661796	-	MRA_1998	-	chromosome replication initiation inhibitor protein
2040	 66.17	0	2239911..2240510	+	199	148661797	-	MRA_1999	-	putative integral membrane protein
2041	 60.14	-1	2240926..2241354	+	142	148661798	-	MRA_2000	-	putative chitinase
2042	 70.19	+1	2241580..2242119	+	179	148661799	-	MRA_2001	-	putative rRNA adenine N-6-methyltransferase
2043	 58.97	-1	2242299..2242571	+	90	148661800	-	MRA_2002	-	hypothetical protein
2044	 62.92	0	2242639..2243199	-	186	148661801	-	MRA_2003	-	hypothetical protein
2045	 62.28	0	2243196..2243537	-	113	148661802	-	MRA_2004	-	putative transcriptional regulatory protein
2046	 67.56	0	2243781..2244116	-	111	148661803	-	MRA_2005	-	putative dehydrogenase
65.43	MEAN

3.37	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.