IslandPathversion 1.0

IslandPath Analysis: Mycobacterium tuberculosis H37Ra



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 65.43 STD DEV: 3.37
Mycobacterium tuberculosis H37Ra, complete genome - 1..4419977
4034 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
148	 60.58	-1	168630..169040	-	136	148659905	-	MRA_0148	-	hypothetical protein
149	 72.49	+2	169070..169996	+	308	148659906	-	MRA_0149	-	hypothetical protein
150	 67.14	0	170063..171541	-	492	148659907	-	MRA_0150	-	chloride channel
151	 63.58	0	171643..172485	+	280	148659908	-	MRA_0151	-	TetR family transcriptional regulator
152	 66.88	0	172574..173527	+	317	148659909	-	MRA_0152	-	hypothetical protein
153	 66.88	0	173570..174502	+	310	148659910	-	MRA_0153	-	hypothetical protein
154	 64.30	0	174597..176117	+	506	148659911	-	MRA_0154	-	putative aldehyde dehydrogenase (NAD+) dependent
155	 64.23	0	176192..177052	+	286	148659912	-	MRA_0155	-	putative short-chain type dehydrogenase/reductase
156	 64.29	0	177059..178027	+	322	148659913	-	MRA_0156	-	putative quinone oxidoreductase
157	 64.58	0	178024..178311	-	95	148659914	-	MRA_0157	-	hypothetical protein
158	 61.74	-1	178903..180669	-	588	148659915	-	MRA_0158	-	PE family protein
159	 63.24	0	180679..182256	-	525	148659916	-	MRA_0159	-	PE family protein
160	 67.51	0	182515..183345	-	276	148659917	ptbB	MRA_0161	-	phosphotyrosine protein phosphatase PtpB
161	 67.16	0	183347..184558	-	403	148659918	fadE2	MRA_0162	-	acyl-CoA dehydrogenase FadE2
162	 68.03	0	184982..186082	+	366	148659919	pntAa	MRA_0163	-	putative NAD(P) transhydrogenase subunit alpha PntAa
163	 60.06	-1	186083..186415	+	110	148659920	pntAb	MRA_0164	-	putative NAD(P) transhydrogenase subunit alpha PntAb
164	 64.43	0	186412..187839	+	475	148659921	pntB	MRA_0165	-	NAD(P) transhydrogenase subunit beta
165	 64.50	0	188145..188789	+	214	148659922	-	MRA_0166	-	TetR family transcriptional regulator
166	 62.62	0	188793..190199	-	468	148659923	-	MRA_0167	-	PE family protein
167	 63.55	0	190291..191799	-	502	148659924	-	MRA_0168	-	PE family protein
168	 67.70	0	191967..193316	+	449	148659925	-	MRA_0169	-	putative oxidoreductase
169	 67.62	0	193344..194495	-	383	148659926	adhE1	MRA_0170	-	zinc-type alcohol dehydrogenase subunit E
170	 62.72	0	194477..194932	+	151	148659927	-	MRA_0171	-	hypothetical protein
171	 60.91	-1	194986..195471	+	161	148659928	-	MRA_0172	-	hypothetical protein
172	 65.53	0	195504..196298	-	264	148659929	-	MRA_0173	-	MarR family transcriptional regulator
173	 62.82	0	196353..198017	+	554	148659930	fadD5	MRA_0174	-	acyl-CoA synthetase
174	 63.41	0	198221..199018	+	265	148659931	yrbE1A	MRA_0175	-	integral membrane protein YrbE1a
175	 64.25	0	199020..199889	+	289	148659932	yrbE1B	MRA_0176	-	integral membrane protein YrbE1b
176	 62.42	0	199894..201258	+	454	148659933	mce1A	MRA_0177	-	MCE-family protein Mce1A
177	 59.94	-1	201255..202295	+	346	148659934	mce1B	MRA_0178	-	MCE-family protein Mce1B
178	 66.60	0	202292..203839	+	515	148659935	mce1C	MRA_0179	-	MCE-family protein Mce1C
179	 62.08	0	203836..205428	+	530	148659936	mce1D	MRA_0180	-	MCE-family protein Mce1D
180	 63.17	0	205425..206597	+	390	148659937	lprK	MRA_0181	-	MCE family lipoprotein LprK
181	 62.08	0	206591..208138	+	515	148659938	mce1F	MRA_0182	-	MCE-family protein Mce1F
182	 64.49	0	208174..208815	+	213	148659939	-	MRA_0183	-	putative Mce associated membrane protein
183	 65.21	0	208818..209780	+	320	148659940	-	MRA_0184	-	putative Mce associated transmembrane protein
184	 59.82	-1	209777..210331	+	184	148659941	-	MRA_0185	-	putative Mce associated protein
185	 63.81	0	210298..211032	+	244	148659942	-	MRA_0186	-	putative Mce associated membrane protein
186	 64.23	0	211063..212172	-	369	148659943	lprO	MRA_0187	-	putative lipoprotein LprO
187	 63.94	0	212252..213610	-	452	148659944	-	MRA_0188	-	putative transmembrane protein
188	 63.13	0	213637..214371	-	244	148659945	-	MRA_0189	-	hypothetical protein
189	 65.77	0	214388..215500	-	370	148659946	sigG	MRA_0190	-	RNA polymerase factor sigma-70
190	 66.55	0	215448..216287	+	279	148659947	-	MRA_0191	-	putative lysophospholipase
191	 69.60	+1	216329..217078	+	249	148659948	-	MRA_0192	-	hypothetical protein
192	 66.86	0	217075..217584	+	169	148659949	-	MRA_0193	-	hypothetical protein
193	 65.90	0	217629..219704	+	691	148659950	bglS	MRA_0194	-	putative beta-glucosidase
194	 67.12	0	220065..220727	+	220	148659951	-	MRA_0195	-	O-methyltransferase
195	 62.27	0	220846..221277	+	143	148659952	-	MRA_0196	-	putative transmembrane protein
196	 65.86	0	221356..223083	-	575	148659953	ilvD	MRA_0197	-	dihydroxy-acid dehydratase
197	 64.26	0	223231..223521	+	96	148659954	-	MRA_0198	-	hypothetical protein
198	 67.87	0	223649..224890	+	413	148659955	-	MRA_0199	-	putative integral membrane protein
199	 66.30	0	224924..226024	+	366	148659956	-	MRA_0200	-	hypothetical protein
200	 61.58	-1	226084..227931	-	615	148659957	-	MRA_0201	-	hypothetical protein
201	 66.81	0	228238..231822	+	1194	148659958	-	MRA_0202	-	drugs ABC transporter ATP-binding protein
202	 63.21	0	232259..232894	+	211	148659959	-	MRA_0203	-	LuxR family transcriptional regulator
203	 67.86	0	233007..233591	+	194	148659960	-	MRA_0204	-	putative transcriptional regulatory protein
204	 66.44	0	233591..235837	+	748	148659961	-	MRA_0205	-	putative oxidoreductase
205	 63.65	0	235878..237869	-	663	148659962	-	MRA_0206	-	putative zinc metalloprotease
206	 64.24	0	237912..238571	+	219	148659963	-	MRA_0207	-	hypothetical protein
207	 67.10	0	238568..239257	+	229	148659964	-	MRA_0208	-	putative transmembrane protein
208	 67.26	0	239254..239757	-	167	148659965	-	MRA_0209	-	hypothetical protein
209	 65.91	0	239754..242654	-	966	148659966	mmpL11	MRA_0210	-	membrane protein MmpL11
210	 67.15	0	242876..243286	+	136	148659967	-	MRA_0211	-	hypothetical protein
211	 66.98	0	243338..244621	-	427	148659968	-	MRA_0212	-	putative transmembrane protein
212	 65.13	0	244746..245849	+	367	148659969	-	MRA_0213	-	putative transmembrane protein
213	 65.29	0	245846..248680	-	944	148659970	mmpL3	MRA_0214	-	putative transmembrane transport protein MmpL3
214	 64.61	0	248746..249474	-	242	148659971	-	MRA_0215	-	hypothetical protein
215	 64.77	0	249477..250268	-	263	148659972	trmB	MRA_0216	-	tRNA (guanine-N(7))-methyltransferase
216	 70.17	+1	250400..251485	+	361	148659973	-	MRA_0217	-	hypothetical protein
217	 69.44	+1	251482..252960	+	492	148659974	-	MRA_0218	-	hypothetical protein
218	 64.09	0	253144..254964	+	606	148659975	pckA	MRA_0219	-	phosphoenolpyruvate carboxykinase
219	 65.64	0	255031..256002	-	323	148659976	nadR	MRA_0220	-	putative transcriptional regulatory protein NadR
220	 61.87	-1	255999..257312	-	437	148659977	-	MRA_0221	-	putative methyltransferase
221	 63.38	0	257426..259039	+	537	148659978	fadD4	MRA_0222	-	acyl-CoA synthetase
222	 65.08	0	259145..260218	-	357	148659979	fadE3	MRA_0223	-	acyl-CoA dehydrogenase FadE3
223	 66.07	0	260275..261288	+	337	148659980	-	MRA_0224	-	hypothetical protein
224	 67.22	0	261285..262193	-	302	148659981	lipW	MRA_0225	-	putative esterase LipW
225	 67.12	0	262286..263614	+	442	148659982	-	MRA_0226	-	putative transmembrane protein
226	 66.48	0	263616..264164	+	182	148659983	-	MRA_0227	-	putative transmembrane protein
227	 65.68	0	264174..265385	+	403	148659984	lipC	MRA_0228	-	esterase LipC
228	 62.70	0	265429..266838	+	469	148659985	-	MRA_0229	-	hypothetical protein
229	 65.15	0	266869..267657	+	262	148659986	echA1	MRA_0230	-	enoyl-CoA hydratase
230	 64.07	0	267663..269126	-	487	148659987	-	MRA_0231	-	aldehyde dehydrogenase
231	 66.93	0	269225..269989	-	254	148659988	-	MRA_0232	-	putative methyltransferase
232	 66.32	0	270025..271179	+	384	148659989	-	MRA_0233	-	glycosyltransferase
233	 69.50	+1	271196..272926	-	576	148659990	-	MRA_0234	-	putative transmembrane protein
234	 65.32	0	272936..274201	-	421	148659991	-	MRA_0235	-	hypothetical protein
235	 69.20	+1	274417..275640	+	407	148659992	-	MRA_0236	-	putative integral membrane acyltransferase
236	 61.97	-1	275668..276348	-	226	148659993	-	MRA_0237	-	hypothetical protein
237	 65.85	0	276345..277325	-	326	148659994	php	MRA_0238	-	phosphotriesterase
238	 63.56	0	277420..279126	+	568	148659995	fadE4	MRA_0239	-	acyl-CoA dehydrogenase FadE4
239	 67.10	0	279261..279950	+	229	148659996	-	MRA_0240	-	TetR/AcrR-family transcriptional regulator
240	 64.87	0	279947..280891	+	314	148659997	nrdB	MRA_0241	-	ribonucleotide-diphosphate reductase subunit beta
241	 66.80	0	280967..282502	-	511	148659998	gabD1	MRA_0242	-	succinic semialdehyde dehydrogenase
242	 62.73	0	282528..283976	-	482	148659999	-	MRA_0243	-	putative transmembrane protein
243	 71.45	+1	284011..288213	-	1400	148660000	-	MRA_0244	-	putative transmembrane protein
244	 64.94	0	288260..288433	-	57	148660001	-	MRA_0245	-	small secreted protein
245	 68.64	0	288548..289714	+	388	148660002	lpqI	MRA_0246	-	putative lipoprotein LpqI
246	 63.74	0	289790..290404	+	204	148660003	-	MRA_0247	-	TetR family transcriptional regulator
247	 65.38	0	290466..290699	+	77	148660004	-	MRA_0248	-	hypothetical protein
65.43	MEAN

3.37	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.