IslandPathversion 1.0

IslandPath Analysis: Mycobacterium tuberculosis H37Ra



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 65.43 STD DEV: 3.37
Mycobacterium tuberculosis H37Ra, complete genome - 1..4419977
4034 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1907	 66.54	0	2115705..2116499	+	264	148661664	modB	MRA_1869	-	molybdate ABC transporter permease protein
1908	 67.48	0	2116506..2117615	+	369	148661665	modC	MRA_1870	-	molybdate ABC transporter ATP-binding protein
1909	 69.33	+1	2117668..2118645	+	325	148661666	apa	MRA_1871	-	alanine and proline rich secreted protein Apa
1910	 62.42	0	2119097..2119402	+	101	148661667	-	MRA_1872	-	putative transmembrane protein
1911	 68.59	0	2119476..2120516	+	346	148661668	adhA	MRA_1873	-	alcohol dehydrogenase AdhA
1912	 64.07	0	2120523..2121293	-	256	148661669	-	MRA_1874	-	putative integral membrane protein
1913	 65.21	0	2121286..2122041	-	251	148661670	-	MRA_1875	-	hypothetical protein
1914	 63.07	0	2122038..2122898	-	286	148661671	-	MRA_1876	-	short chain dehydrogenase
1915	 66.63	0	2122994..2125408	+	804	148661672	-	MRA_1877	-	hypothetical protein
1916	 66.60	0	2125696..2127180	+	494	148661673	-	MRA_1878	-	acetyl-CoA acetyltransferase
1917	 66.86	0	2127279..2129378	+	699	148661674	-	MRA_1879	-	hypothetical protein
1918	 64.56	0	2129392..2130627	-	411	148661675	-	MRA_1880	-	ferredoxin reductase
1919	 62.58	0	2130727..2131362	-	211	148661676	-	MRA_1881	-	hypothetical protein
1920	 63.85	0	2131427..2131816	-	129	148661677	-	MRA_1882	-	hypothetical protein
1921	 66.27	0	2131839..2133083	-	414	148661678	lldD2	MRA_1883	-	L-lactate dehydrogenase
1922	 63.47	0	2133106..2133543	+	145	148661679	-	MRA_1884	-	hypothetical protein
1923	 63.32	0	2133616..2134302	+	228	148661680	-	MRA_1885	-	hypothetical protein
1924	 65.77	0	2134313..2134756	+	147	148661681	-	MRA_1886	-	hypothetical protein
1925	 56.67	-2	2135272..2135751	+	159	148661682	bfrA	MRA_1887	-	bacterioferritin
1926	 64.39	0	2135836..2137899	+	687	148661683	-	MRA_1888	-	putative integral membrane protein
1927	 64.67	0	2137954..2139306	+	450	148661684	glnA3	MRA_1889	-	putative glutamine synthetase
1928	 63.15	0	2139309..2140445	+	378	148661685	-	MRA_1890	-	hypothetical protein
1929	 64.24	0	2140473..2141789	-	438	148661686	cyp140	MRA_1891	-	putative cytochrome p450 140 CYP140
1930	 61.23	-1	2141839..2142261	-	140	148661687	lppE	MRA_1892	-	putative lipoprotein LppE
1931	 64.27	0	2142302..2143135	-	277	148661688	-	MRA_1893	-	short chain dehydrogenase
1932	 62.55	0	2143163..2143624	-	153	148661689	-	MRA_1894	-	hypothetical protein
1933	 63.09	0	2143663..2144193	-	176	148661690	rpfC	MRA_1895	-	putative resuscitation-promoting factor RpfC
1934	 64.33	0	2144205..2144804	-	199	148661691	-	MRA_1896	-	chorismate mutase
1935	 64.21	0	2144822..2145799	-	325	148661692	fbpB	MRA_1897	-	secreted antigen 85-B FbpB
1936	 66.32	0	2146190..2147332	+	380	148661693	-	MRA_1898	-	hypothetical protein
1937	 60.43	-1	2147451..2148011	-	186	148661694	-	MRA_1899	-	putative transmembrane protein
1938	 68.39	0	2148376..2148549	-	57	148661695	-	MRA_1899A	-	hypothetical protein
1939	 65.83	0	2148593..2148949	-	118	148661696	-	MRA_1900	-	hypothetical protein
1940	 63.07	0	2149008..2149619	-	203	148661697	-	MRA_1901	-	hypothetical protein
1941	 66.18	0	2149673..2150080	+	135	148661698	-	MRA_1902	-	hypothetical protein
1942	 63.78	0	2150097..2150408	+	103	148661699	-	MRA_1903	-	hypothetical protein
1943	 61.19	-1	2150418..2150636	+	72	148661700	-	MRA_1904	-	hypothetical protein
1944	 63.84	0	2150671..2151801	-	376	148661701	-	MRA_1905	-	hypothetical protein
1945	 65.51	0	2151874..2152305	+	143	148661702	-	MRA_1906	-	hypothetical protein
1946	 66.06	0	2152453..2153607	+	384	148661703	-	MRA_1907	-	putative dehydrogenase
1947	 61.73	-1	2153467..2154378	-	303	148661704	-	MRA_1908	-	hypothetical protein
1948	 66.67	0	2154383..2154814	-	143	148661705	-	MRA_1909	-	D-tyrosyl-tRNA deacylase
1949	 66.34	0	2154872..2155180	+	102	148661706	-	MRA_1909A	-	hypothetical protein
1950	 70.35	+1	2155146..2156177	-	343	148661707	lppD	MRA_1910	-	putative lipoprotein LppD
1951	 65.80	0	2156177..2157565	-	462	148661708	lipJ	MRA_1911	-	putative lignin peroxidase LipJ
1952	 65.97	0	2157594..2158886	+	430	148661709	cinA	MRA_1912	-	competence damage-inducible protein A
1953	 60.84	-1	2158938..2160206	-	422	148661710	nanT	MRA_1913	-	putative sialic acid-transport integral membrane protein NanT
1954	 58.27	-2	2160296..2160700	+	134	148661711	-	MRA_1914	-	hypothetical protein
1955	 64.58	0	2160886..2161317	+	143	148661712	-	MRA_1915	-	hypothetical protein
1956	 66.15	0	2161365..2162327	-	320	148661713	aao	MRA_1916	-	D-amino acid oxidase
1957	 64.76	0	2162357..2162827	-	156	148661714	-	MRA_1917	-	hypothetical protein
1958	 65.28	0	2163167..2163814	-	215	148661715	-	MRA_1918	-	hypothetical protein
1959	 64.60	0	2163821..2166043	-	740	148661716	katG	MRA_1919	-	catalase-peroxidase
1960	 62.25	0	2166081..2166533	-	150	148661717	furA	MRA_1920	-	ferric uptake regulation protein FurA
1961	 66.33	0	2166638..2167231	-	197	148661718	-	MRA_1921	-	phosphatidylethanolamine-binding protein
1962	 68.48	0	2167314..2167919	-	201	148661719	lppC	MRA_1922	-	putative lipoprotein LppC
1963	 65.17	0	2168019..2169023	-	334	148661720	fadB5	MRA_1923	-	oxidoreductase FadB5
1964	 65.07	0	2169123..2169875	+	250	148661721	-	MRA_1924	-	hypothetical protein
1965	 62.25	0	2169853..2170260	-	135	148661722	-	MRA_1925	-	hypothetical protein
1966	 65.40	0	2170395..2171498	+	367	148661723	aceAa	MRA_1926	-	isocitrate lyase AceAa
1967	 63.99	0	2171498..2172694	+	398	148661724	aceAb	MRA_1927	-	isocitrate lyase AceAb
1968	 59.75	-1	2172864..2177243	-	1459	148661725	-	MRA_1928	-	PPE family protein
1969	 60.46	-1	2177581..2180544	-	987	148661726	-	MRA_1929	-	PPE family protein
1970	 65.16	0	2180993..2181457	-	154	148661727	-	MRA_1930	-	hypothetical protein
1971	 63.66	0	2181555..2182418	+	287	148661728	-	MRA_1931	-	1-acyl-sn-glycerol-3-phosphate acyltransferase
1972	 62.89	0	2182456..2183727	-	423	148661729	lppF	MRA_1932	-	putative lipoprotein LppF
1973	 63.71	0	2183999..2185114	+	371	148661730	-	MRA_1933	-	putative peptidase
1974	 63.09	0	2185105..2186445	+	446	148661731	lipD	MRA_1934	-	putative lipase LipD
1975	 65.88	0	2186482..2186862	-	126	148661732	-	MRA_1935	-	hypothetical protein
1976	 64.90	0	2187019..2188881	+	620	148661733	fadD31	MRA_1936	-	acyl-CoA synthetase
1977	 61.88	-1	2188889..2189368	-	159	148661734	mpt63	MRA_1937	-	immunogenic protein Mpt63
1978	 65.50	0	2189605..2190378	+	257	148661735	-	MRA_1938	-	hypothetical protein
1979	 59.51	-1	2190382..2191149	-	255	148661736	-	MRA_1939	-	short chain dehydrogenase
1980	 61.27	-1	2191194..2191805	-	203	148661737	-	MRA_1940	-	hypothetical protein
1981	 70.29	+1	2191817..2192341	-	174	148661738	-	MRA_1940A	-	hypothetical protein
1982	 68.46	0	2192359..2193138	-	259	148661739	-	MRA_1941	-	putative transcriptional regulatory protein
1983	 65.46	0	2193271..2193768	+	165	148661740	tpx	MRA_1942	-	thiol peroxidase
1984	 68.96	+1	2193765..2194856	-	363	148661741	fadE18	MRA_1943	-	acyl-CoA dehydrogenase FadE18
1985	 69.84	+1	2194858..2196087	-	409	148661742	fadE17	MRA_1944	-	acyl-CoA dehydrogenase FadE17
1986	 66.98	0	2196102..2197058	-	318	148661743	echA13	MRA_1945	-	enoyl-CoA hydratase
1987	 65.68	0	2197283..2198392	+	369	148661744	-	MRA_1946	-	putative monooxygenase
1988	 65.91	0	2198395..2200914	+	839	148661745	-	MRA_1947	-	putative oxygenase
1989	 66.48	0	2200926..2201996	+	356	148661746	ephB	MRA_1948	-	epoxide hydrolase EphB
1990	 67.44	0	2201993..2202508	+	171	148661747	-	MRA_1949	-	putative dimerase
1991	 69.02	+1	2202505..2203566	+	353	148661748	ribA1	MRA_1950	-	3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II
1992	 67.32	0	2203563..2204333	+	256	148661749	-	MRA_1951	-	putative short-chain type dehydrogenase/reductase
1993	 65.45	0	2204543..2204872	-	109	148661750	-	MRA_1952	-	hypothetical protein
1994	 62.70	0	2204869..2205246	-	125	148661751	-	MRA_1953	-	hypothetical protein
1995	 65.82	0	2205243..2205833	-	196	148661752	-	MRA_1954	-	hypothetical protein
1996	 64.11	0	2205804..2207252	+	482	148661753	-	MRA_1955	-	hypothetical protein
1997	 62.69	0	2207407..2207859	-	150	148661754	lppG	MRA_1956	-	putative lipoprotein LppG
1998	 66.92	0	2207923..2208324	+	133	148661755	-	MRA_1957	-	hypothetical protein
1999	 51.28	-2	2208613..2208963	-	116	148661756	-	MRA_1958	-	hypothetical protein
2000	 63.01	0	2208974..2209876	-	300	148661757	-	MRA_1959	-	hypothetical protein
2001	 60.42	-1	2209897..2210088	-	63	148661758	-	MRA_1960	-	hypothetical protein
2002	 68.35	0	2210089..2210385	-	98	148661759	-	MRA_1961	-	hypothetical protein
2003	 65.74	0	2210625..2210840	+	71	148661760	-	MRA_1962	-	hypothetical protein
2004	 61.54	-1	2210837..2211148	+	103	148661761	-	MRA_1963	-	hypothetical protein
2005	 61.60	-1	2211483..2211995	+	170	148661762	-	MRA_1964	-	hypothetical protein
2006	 61.78	-1	2212037..2212486	+	149	148661763	-	MRA_1965	-	putative transcriptional regulatory protein
65.43	MEAN

3.37	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.