IslandPathversion 1.0

IslandPath Analysis: Mycobacterium tuberculosis H37Ra



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 65.43 STD DEV: 3.37
Mycobacterium tuberculosis H37Ra, complete genome - 1..4419977
4034 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1851	 66.52	0	2053316..2054707	+	463	148661608	-	MRA_1815	-	PPE family protein
1852	 70.10	+1	2054855..2056807	-	650	148661609	-	MRA_1816	-	PE-PGRS family protein
1853	 59.33	-1	2056955..2057281	-	108	148661610	-	MRA_1817	-	hypothetical protein
1854	 60.63	-1	2057619..2057966	-	115	148661611	-	MRA_1817A	-	hypothetical protein
1855	 61.00	-1	2058004..2058303	+	99	148661612	-	MRA_1818	-	PE family protein
1856	 68.65	0	2058318..2059529	+	403	148661613	-	MRA_1819	-	PPE family protein
1857	 67.80	0	2059853..2061082	+	409	148661614	-	MRA_1820	-	PPE family protein
1858	 65.60	0	2061214..2062620	+	468	148661615	-	MRA_1821	-	PPE family protein
1859	 62.18	0	2062865..2063221	+	118	148661616	-	MRA_1822	-	hypothetical protein
1860	 65.25	0	2063375..2064079	+	234	148661617	mgtC	MRA_1823	-	Mg2+ transport P-type ATPase C
1861	 66.75	0	2064089..2065291	-	400	148661618	-	MRA_1824	-	putative dehydrogenase
1862	 62.96	0	2065613..2066044	-	143	148661619	-	MRA_1825	-	hypothetical protein
1863	 61.35	-1	2066453..2067355	+	300	148661620	erg3	MRA_1826	-	sterol desaturase-related protein
1864	 65.62	0	2067460..2068125	+	221	148661621	-	MRA_1827	-	hypothetical protein
1865	 63.83	0	2068188..2068892	+	234	148661622	-	MRA_1828	-	putative transcriptional regulatory protein
1866	 64.48	0	2069527..2070990	+	487	148661623	-	MRA_1829	-	hypothetical protein
1867	 78.16	+2	2071110..2072606	-	498	148661624	-	MRA_1830	-	PE-PGRS family protein
1868	 62.24	0	2072741..2074660	-	639	148661625	-	MRA_1831	-	ABC transporter ATP-binding protein
1869	 67.82	0	2074731..2076374	+	547	148661626	ilvG	MRA_1832	-	hypothetical protein
1870	 64.32	0	2076389..2078815	+	808	148661627	secA2	MRA_1833	-	preprotein translocase subunit SecA
1871	 60.32	-1	2079012..2079641	+	209	148661628	pgsA2	MRA_1834	-	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase
1872	 67.10	0	2079634..2080557	+	307	148661629	-	MRA_1835	-	hypothetical protein
1873	 63.11	0	2080586..2080951	+	121	148661630	-	MRA_1836	-	small basic protein
1874	 62.46	0	2080968..2081846	+	292	148661631	-	MRA_1837	-	hypothetical protein
1875	 61.48	-1	2081884..2082288	+	134	148661632	gcvH	MRA_1838	-	glycine cleavage system protein H
1876	 62.58	0	2082528..2083016	+	162	148661633	cfp17	MRA_1839	-	hypothetical protein
1877	 65.73	0	2083013..2083756	+	247	148661634	-	MRA_1840	-	hypothetical protein
1878	 58.99	-1	2083875..2084369	+	164	148661635	-	MRA_1841	-	hypothetical protein
1879	 63.86	0	2084773..2085450	+	225	148661636	-	MRA_1842	-	hypothetical protein
1880	 62.79	0	2085503..2085760	+	85	148661637	-	MRA_1842A	-	hypothetical protein
1881	 66.14	0	2085809..2088634	+	941	148661638	gcvB	MRA_1843	-	glycine dehydrogenase
1882	 64.58	0	2088861..2089721	-	286	148661639	-	MRA_1844	-	haloalkane dehalogenase
1883	 66.09	0	2089762..2090628	+	288	148661640	-	MRA_1845	-	putative hydrolase
1884	 66.56	0	2090633..2092519	-	628	148661641	-	MRA_1846	-	hypothetical protein
1885	 65.54	0	2092535..2094568	-	677	148661642	-	MRA_1847	-	hypothetical protein
1886	 63.93	0	2094688..2096913	-	741	148661643	glcB	MRA_1848	-	malate synthase G
1887	 60.10	-1	2097189..2097584	-	131	148661644	-	MRA_1849	-	hypothetical protein
1888	 65.91	0	2097581..2097844	-	87	148661645	-	MRA_1850	-	hypothetical protein
1889	 75.65	+2	2097903..2099450	-	515	148661646	-	MRA_1851	-	PE-PGRS family protein
1890	 64.84	0	2099613..2100650	-	345	148661647	-	MRA_1852	-	hypothetical protein
1891	 67.25	0	2100650..2102017	-	455	148661648	-	MRA_1853	-	hypothetical protein
1892	 67.36	0	2102191..2103630	-	479	148661649	guaB1	MRA_1854	-	inositol-5-monophosphate dehydrogenase
1893	 65.23	0	2103663..2105120	-	485	148661650	gnd1	MRA_1855	-	6-phosphogluconate dehydrogenase
1894	 72.13	+1	2105150..2106100	-	316	148661651	-	MRA_1856	-	hypothetical protein
1895	 64.75	0	2106115..2106531	-	138	148661652	-	MRA_1857	-	putative transcriptional regulatory protein
1896	 64.54	0	2106809..2107231	+	140	148661653	-	MRA_1858	-	hypothetical protein
1897	 67.00	0	2107280..2107582	+	100	148661654	ureA	MRA_1859	-	urease subunit gamma
1898	 64.76	0	2107579..2107893	+	104	148661655	ureB	MRA_1860	-	urease subunit beta
1899	 65.80	0	2107893..2109626	+	577	148661656	ureC	MRA_1861	-	urease subunit alpha
1900	 71.07	+1	2109626..2110261	+	211	148661657	ureF	MRA_1862	-	urease accessory protein UreF
1901	 67.26	0	2110272..2110946	+	224	148661658	ureG	MRA_1863	-	urease accessory protein UreG
1902	 68.26	0	2110954..2111580	+	208	148661659	ureD	MRA_1864	-	putative urease accessory protein UreD
1903	 64.08	0	2111583..2112974	-	463	148661660	ndh	MRA_1865	-	NADH dehydrogenase Ndh
1904	 63.64	0	2113116..2114039	-	307	148661661	-	MRA_1866	-	putative oxidoreductase
1905	 68.88	+1	2114078..2114755	-	225	148661662	-	MRA_1867	-	short chain dehydrogenase
1906	 62.85	0	2114917..2115702	+	261	148661663	modA	MRA_1868	-	molybdate ABC transporter substrate-binding protein
1907	 66.54	0	2115705..2116499	+	264	148661664	modB	MRA_1869	-	molybdate ABC transporter permease protein
1908	 67.48	0	2116506..2117615	+	369	148661665	modC	MRA_1870	-	molybdate ABC transporter ATP-binding protein
1909	 69.33	+1	2117668..2118645	+	325	148661666	apa	MRA_1871	-	alanine and proline rich secreted protein Apa
1910	 62.42	0	2119097..2119402	+	101	148661667	-	MRA_1872	-	putative transmembrane protein
1911	 68.59	0	2119476..2120516	+	346	148661668	adhA	MRA_1873	-	alcohol dehydrogenase AdhA
1912	 64.07	0	2120523..2121293	-	256	148661669	-	MRA_1874	-	putative integral membrane protein
1913	 65.21	0	2121286..2122041	-	251	148661670	-	MRA_1875	-	hypothetical protein
1914	 63.07	0	2122038..2122898	-	286	148661671	-	MRA_1876	-	short chain dehydrogenase
1915	 66.63	0	2122994..2125408	+	804	148661672	-	MRA_1877	-	hypothetical protein
1916	 66.60	0	2125696..2127180	+	494	148661673	-	MRA_1878	-	acetyl-CoA acetyltransferase
1917	 66.86	0	2127279..2129378	+	699	148661674	-	MRA_1879	-	hypothetical protein
1918	 64.56	0	2129392..2130627	-	411	148661675	-	MRA_1880	-	ferredoxin reductase
1919	 62.58	0	2130727..2131362	-	211	148661676	-	MRA_1881	-	hypothetical protein
1920	 63.85	0	2131427..2131816	-	129	148661677	-	MRA_1882	-	hypothetical protein
1921	 66.27	0	2131839..2133083	-	414	148661678	lldD2	MRA_1883	-	L-lactate dehydrogenase
1922	 63.47	0	2133106..2133543	+	145	148661679	-	MRA_1884	-	hypothetical protein
1923	 63.32	0	2133616..2134302	+	228	148661680	-	MRA_1885	-	hypothetical protein
1924	 65.77	0	2134313..2134756	+	147	148661681	-	MRA_1886	-	hypothetical protein
1925	 56.67	-2	2135272..2135751	+	159	148661682	bfrA	MRA_1887	-	bacterioferritin
1926	 64.39	0	2135836..2137899	+	687	148661683	-	MRA_1888	-	putative integral membrane protein
1927	 64.67	0	2137954..2139306	+	450	148661684	glnA3	MRA_1889	-	putative glutamine synthetase
1928	 63.15	0	2139309..2140445	+	378	148661685	-	MRA_1890	-	hypothetical protein
1929	 64.24	0	2140473..2141789	-	438	148661686	cyp140	MRA_1891	-	putative cytochrome p450 140 CYP140
1930	 61.23	-1	2141839..2142261	-	140	148661687	lppE	MRA_1892	-	putative lipoprotein LppE
1931	 64.27	0	2142302..2143135	-	277	148661688	-	MRA_1893	-	short chain dehydrogenase
1932	 62.55	0	2143163..2143624	-	153	148661689	-	MRA_1894	-	hypothetical protein
1933	 63.09	0	2143663..2144193	-	176	148661690	rpfC	MRA_1895	-	putative resuscitation-promoting factor RpfC
1934	 64.33	0	2144205..2144804	-	199	148661691	-	MRA_1896	-	chorismate mutase
1935	 64.21	0	2144822..2145799	-	325	148661692	fbpB	MRA_1897	-	secreted antigen 85-B FbpB
1936	 66.32	0	2146190..2147332	+	380	148661693	-	MRA_1898	-	hypothetical protein
1937	 60.43	-1	2147451..2148011	-	186	148661694	-	MRA_1899	-	putative transmembrane protein
1938	 68.39	0	2148376..2148549	-	57	148661695	-	MRA_1899A	-	hypothetical protein
1939	 65.83	0	2148593..2148949	-	118	148661696	-	MRA_1900	-	hypothetical protein
1940	 63.07	0	2149008..2149619	-	203	148661697	-	MRA_1901	-	hypothetical protein
1941	 66.18	0	2149673..2150080	+	135	148661698	-	MRA_1902	-	hypothetical protein
1942	 63.78	0	2150097..2150408	+	103	148661699	-	MRA_1903	-	hypothetical protein
1943	 61.19	-1	2150418..2150636	+	72	148661700	-	MRA_1904	-	hypothetical protein
1944	 63.84	0	2150671..2151801	-	376	148661701	-	MRA_1905	-	hypothetical protein
1945	 65.51	0	2151874..2152305	+	143	148661702	-	MRA_1906	-	hypothetical protein
1946	 66.06	0	2152453..2153607	+	384	148661703	-	MRA_1907	-	putative dehydrogenase
1947	 61.73	-1	2153467..2154378	-	303	148661704	-	MRA_1908	-	hypothetical protein
1948	 66.67	0	2154383..2154814	-	143	148661705	-	MRA_1909	-	D-tyrosyl-tRNA deacylase
1949	 66.34	0	2154872..2155180	+	102	148661706	-	MRA_1909A	-	hypothetical protein
1950	 70.35	+1	2155146..2156177	-	343	148661707	lppD	MRA_1910	-	putative lipoprotein LppD
65.43	MEAN

3.37	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.