IslandPathversion 1.0

IslandPath Analysis: Mycobacterium tuberculosis H37Ra



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 65.43 STD DEV: 3.37
Mycobacterium tuberculosis H37Ra, complete genome - 1..4419977
4034 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1806	 64.38	0	1998726..1999250	+	174	148661563	cut1	MRA_1771	-	putative cutinase Cut1
1807	 70.06	+1	2001912..2002382	-	156	148661564	-	MRA_1772	-	PE-PGRS family protein
1808	 62.39	0	2002424..2002657	+	77	148661565	-	MRA_1773	-	hypothetical protein
1809	 64.88	0	2002838..2004346	+	502	148661566	-	MRA_1774	-	hypothetical protein
1810	 64.32	0	2004356..2004739	-	127	148661567	-	MRA_1775	-	hypothetical protein
1811	 62.36	0	2004739..2005527	-	262	148661568	-	MRA_1776	-	hypothetical protein
1812	 65.75	0	2005837..2006163	+	108	148661569	-	MRA_1777	-	IS6110 hypothetical protein
1813	 63.84	0	2006214..2007098	+	294	148661570	-	MRA_1778	-	IS6110 transposase
1814	 64.83	0	2006965..2007345	+	126	148661571	-	MRA_1779	-	truncated IS6110 transposase
1815	 65.03	0	2007350..2008447	-	365	148661572	-	MRA_1780	-	hypothetical protein
1816	 55.56	-2	2009074..2009289	-	71	148661573	-	MRA_1781	-	putative transposase
1817	 64.44	0	2009669..2009938	+	89	148661574	-	MRA_1782	-	hypothetical protein
1818	 65.00	0	2010006..2010365	+	119	148661575	-	MRA_1783	-	hypothetical protein
1819	 73.94	+2	2010546..2012402	+	618	148661576	-	MRA_1784	-	PE-PGRS family protein
1820	 64.98	0	2012558..2013802	+	414	148661577	-	MRA_1785	-	hypothetical protein
1821	 68.07	0	2013810..2015096	+	428	148661578	-	MRA_1786	-	hypothetical protein
1822	 63.17	0	2015093..2016379	+	428	148661579	-	MRA_1787	-	oxidoreductase
1823	 63.78	0	2016568..2016879	+	103	148661580	-	MRA_1788	-	hypothetical protein
1824	 66.53	0	2016952..2017698	-	248	148661581	-	MRA_1789	-	IclR family transcriptional regulator
1825	 65.40	0	2017764..2019104	+	446	148661582	-	MRA_1790	-	oxidoreductase
1826	 66.42	0	2019104..2019922	+	272	148661583	-	MRA_1791	-	hypothetical protein
1827	 64.71	0	2019927..2020487	-	186	148661584	-	MRA_1792	-	putative transcriptional regulatory protein
1828	 63.60	0	2020588..2021892	+	434	148661585	cyp144	MRA_1793	-	putative cytochrome p450 144 CYP144
1829	 65.33	0	2022013..2022462	-	149	148661586	-	MRA_1794	-	hypothetical protein
1830	 68.73	0	2022618..2024411	-	597	148661587	-	MRA_1795	-	hypothetical protein
1831	 61.17	-1	2024631..2025194	+	187	148661588	-	MRA_1795A	-	hypothetical protein
1832	 67.95	0	2025234..2027408	-	724	148661589	malQ	MRA_1796	-	4-alpha-glucanotransferase/amylomaltase/disproportionating enzyme
1833	 65.09	0	2027672..2029192	+	506	148661590	-	MRA_1797	-	hypothetical protein
1834	 64.15	0	2029189..2033364	+	1391	148661591	-	MRA_1798	-	FtsK/SpoIIIE family protein
1835	 64.04	0	2033379..2034560	-	393	148661592	cyp143	MRA_1799	-	putative cytochrome p450 143 CYP143
1836	 63.24	0	2034760..2034963	+	67	148661593	-	MRA_1800	-	putative ferredoxin
1837	 66.34	0	2035113..2036330	+	405	148661594	-	MRA_1801	-	PPE family protein
1838	 67.00	0	2036409..2036708	+	99	148661595	-	MRA_1802	-	PE family protein
1839	 68.02	0	2036722..2037903	+	393	148661596	-	MRA_1803	-	PPE family protein
1840	 68.09	0	2038357..2039409	+	350	148661597	-	MRA_1804	-	PPE family protein
1841	 65.33	0	2039836..2040135	+	99	148661598	-	MRA_1805	-	PE family protein
1842	 62.81	0	2040626..2040910	+	94	148661599	esxN	MRA_1806	-	putative esat-6 like protein EsxN
1843	 62.35	0	2040998..2041900	+	300	148661600	-	MRA_1807	-	hypothetical protein
1844	 64.35	0	2042172..2043683	+	503	148661601	-	MRA_1808	-	hypothetical protein
1845	 65.64	0	2043661..2045418	+	585	148661602	mycP5	MRA_1809	-	proline rich membrane-anchored mycosin MycP5
1846	 64.70	0	2045415..2046635	+	406	148661603	-	MRA_1810	-	hypothetical protein
1847	 63.45	0	2046632..2048464	+	610	148661604	-	MRA_1811	-	hypothetical protein
1848	 66.67	0	2049091..2049282	+	63	148661605	lppT	MRA_1812	-	putative lipoprotein LppT
1849	 63.57	0	2049385..2051352	+	655	148661606	-	MRA_1813	-	PPE family protein
1850	 66.67	0	2051933..2053204	+	423	148661607	-	MRA_1814	-	PPE family protein
1851	 66.52	0	2053316..2054707	+	463	148661608	-	MRA_1815	-	PPE family protein
1852	 70.10	+1	2054855..2056807	-	650	148661609	-	MRA_1816	-	PE-PGRS family protein
1853	 59.33	-1	2056955..2057281	-	108	148661610	-	MRA_1817	-	hypothetical protein
1854	 60.63	-1	2057619..2057966	-	115	148661611	-	MRA_1817A	-	hypothetical protein
1855	 61.00	-1	2058004..2058303	+	99	148661612	-	MRA_1818	-	PE family protein
1856	 68.65	0	2058318..2059529	+	403	148661613	-	MRA_1819	-	PPE family protein
1857	 67.80	0	2059853..2061082	+	409	148661614	-	MRA_1820	-	PPE family protein
1858	 65.60	0	2061214..2062620	+	468	148661615	-	MRA_1821	-	PPE family protein
1859	 62.18	0	2062865..2063221	+	118	148661616	-	MRA_1822	-	hypothetical protein
1860	 65.25	0	2063375..2064079	+	234	148661617	mgtC	MRA_1823	-	Mg2+ transport P-type ATPase C
1861	 66.75	0	2064089..2065291	-	400	148661618	-	MRA_1824	-	putative dehydrogenase
1862	 62.96	0	2065613..2066044	-	143	148661619	-	MRA_1825	-	hypothetical protein
1863	 61.35	-1	2066453..2067355	+	300	148661620	erg3	MRA_1826	-	sterol desaturase-related protein
1864	 65.62	0	2067460..2068125	+	221	148661621	-	MRA_1827	-	hypothetical protein
1865	 63.83	0	2068188..2068892	+	234	148661622	-	MRA_1828	-	putative transcriptional regulatory protein
1866	 64.48	0	2069527..2070990	+	487	148661623	-	MRA_1829	-	hypothetical protein
1867	 78.16	+2	2071110..2072606	-	498	148661624	-	MRA_1830	-	PE-PGRS family protein
1868	 62.24	0	2072741..2074660	-	639	148661625	-	MRA_1831	-	ABC transporter ATP-binding protein
1869	 67.82	0	2074731..2076374	+	547	148661626	ilvG	MRA_1832	-	hypothetical protein
1870	 64.32	0	2076389..2078815	+	808	148661627	secA2	MRA_1833	-	preprotein translocase subunit SecA
1871	 60.32	-1	2079012..2079641	+	209	148661628	pgsA2	MRA_1834	-	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase
1872	 67.10	0	2079634..2080557	+	307	148661629	-	MRA_1835	-	hypothetical protein
1873	 63.11	0	2080586..2080951	+	121	148661630	-	MRA_1836	-	small basic protein
1874	 62.46	0	2080968..2081846	+	292	148661631	-	MRA_1837	-	hypothetical protein
1875	 61.48	-1	2081884..2082288	+	134	148661632	gcvH	MRA_1838	-	glycine cleavage system protein H
1876	 62.58	0	2082528..2083016	+	162	148661633	cfp17	MRA_1839	-	hypothetical protein
1877	 65.73	0	2083013..2083756	+	247	148661634	-	MRA_1840	-	hypothetical protein
1878	 58.99	-1	2083875..2084369	+	164	148661635	-	MRA_1841	-	hypothetical protein
1879	 63.86	0	2084773..2085450	+	225	148661636	-	MRA_1842	-	hypothetical protein
1880	 62.79	0	2085503..2085760	+	85	148661637	-	MRA_1842A	-	hypothetical protein
1881	 66.14	0	2085809..2088634	+	941	148661638	gcvB	MRA_1843	-	glycine dehydrogenase
1882	 64.58	0	2088861..2089721	-	286	148661639	-	MRA_1844	-	haloalkane dehalogenase
1883	 66.09	0	2089762..2090628	+	288	148661640	-	MRA_1845	-	putative hydrolase
1884	 66.56	0	2090633..2092519	-	628	148661641	-	MRA_1846	-	hypothetical protein
1885	 65.54	0	2092535..2094568	-	677	148661642	-	MRA_1847	-	hypothetical protein
1886	 63.93	0	2094688..2096913	-	741	148661643	glcB	MRA_1848	-	malate synthase G
1887	 60.10	-1	2097189..2097584	-	131	148661644	-	MRA_1849	-	hypothetical protein
1888	 65.91	0	2097581..2097844	-	87	148661645	-	MRA_1850	-	hypothetical protein
1889	 75.65	+2	2097903..2099450	-	515	148661646	-	MRA_1851	-	PE-PGRS family protein
1890	 64.84	0	2099613..2100650	-	345	148661647	-	MRA_1852	-	hypothetical protein
1891	 67.25	0	2100650..2102017	-	455	148661648	-	MRA_1853	-	hypothetical protein
1892	 67.36	0	2102191..2103630	-	479	148661649	guaB1	MRA_1854	-	inositol-5-monophosphate dehydrogenase
1893	 65.23	0	2103663..2105120	-	485	148661650	gnd1	MRA_1855	-	6-phosphogluconate dehydrogenase
1894	 72.13	+1	2105150..2106100	-	316	148661651	-	MRA_1856	-	hypothetical protein
1895	 64.75	0	2106115..2106531	-	138	148661652	-	MRA_1857	-	putative transcriptional regulatory protein
1896	 64.54	0	2106809..2107231	+	140	148661653	-	MRA_1858	-	hypothetical protein
1897	 67.00	0	2107280..2107582	+	100	148661654	ureA	MRA_1859	-	urease subunit gamma
1898	 64.76	0	2107579..2107893	+	104	148661655	ureB	MRA_1860	-	urease subunit beta
1899	 65.80	0	2107893..2109626	+	577	148661656	ureC	MRA_1861	-	urease subunit alpha
1900	 71.07	+1	2109626..2110261	+	211	148661657	ureF	MRA_1862	-	urease accessory protein UreF
1901	 67.26	0	2110272..2110946	+	224	148661658	ureG	MRA_1863	-	urease accessory protein UreG
1902	 68.26	0	2110954..2111580	+	208	148661659	ureD	MRA_1864	-	putative urease accessory protein UreD
1903	 64.08	0	2111583..2112974	-	463	148661660	ndh	MRA_1865	-	NADH dehydrogenase Ndh
1904	 63.64	0	2113116..2114039	-	307	148661661	-	MRA_1866	-	putative oxidoreductase
1905	 68.88	+1	2114078..2114755	-	225	148661662	-	MRA_1867	-	short chain dehydrogenase
65.43	MEAN

3.37	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.