IslandPathversion 1.0

IslandPath Analysis: Mycobacterium tuberculosis H37Ra



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 65.43 STD DEV: 3.37
Mycobacterium tuberculosis H37Ra, complete genome - 1..4419977
4034 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1715	 64.63	0	1901759..1902493	-	244	148661472	-	MRA_1686	-	Crp/Fnr family transcriptional regulator
1716	 61.99	-1	1902565..1903269	+	234	148661473	-	MRA_1687	-	hypothetical protein
1717	 63.75	0	1903266..1903814	+	182	148661474	dsbF	MRA_1688	-	putative lipoprotein DsbF
1718	 69.10	+1	1903915..1904817	+	300	148661475	-	MRA_1689	-	hypothetical protein
1719	 67.47	0	1904817..1905938	+	373	148661476	fadE16	MRA_1690	-	acyl-CoA dehydrogenase FadE16
1720	 64.85	0	1905947..1906771	+	274	148661477	-	MRA_1691	-	hypothetical protein
1721	 68.28	0	1906768..1907760	+	330	148661478	moeX	MRA_1692	-	molybdopterin biosynthesis protein MoeX
1722	 60.02	-1	1907921..1908838	+	305	148661479	-	MRA_1693	-	hypothetical protein
1723	 65.77	0	1909112..1912111	+	999	148661480	-	MRA_1694	-	acyl-CoA synthetase
1724	 68.89	+1	1912104..1912328	+	74	148661481	-	MRA_1694A	-	hypothetical protein
1725	 62.82	0	1912294..1912917	-	207	148661482	-	MRA_1695	-	hypothetical protein
1726	 63.44	0	1912919..1913599	-	226	148661483	-	MRA_1696	-	multidrug resistance ABC transporter permease protein
1727	 63.93	0	1913671..1914438	-	255	148661484	-	MRA_1697	-	multidrug resistance ABC transporter ATP-binding protein
1728	 70.59	+1	1914497..1915108	+	203	148661485	mpg	MRA_1698	-	3-methyladenine DNA glycosylase
1729	 64.71	0	1915120..1916394	+	424	148661486	tyrS	MRA_1699	-	tyrosyl-tRNA synthetase
1730	 62.76	0	1917045..1917428	+	127	148661487	lprJ	MRA_1700	-	putative lipoprotein LprJ
1731	 70.39	+1	1917467..1918219	+	250	148661488	-	MRA_1701	-	hypothetical protein
1732	 68.55	0	1918216..1919277	+	353	148661489	-	MRA_1702	-	putative phosphatase
1733	 63.84	0	1919274..1919450	+	58	148661490	-	MRA_1702A	-	hypothetical protein
1734	 69.52	+1	1919458..1920264	+	268	148661491	tlyA	MRA_1703	-	cytotoxin/hemolysin
1735	 64.94	0	1920264..1921187	+	307	148661492	ppnK	MRA_1704	-	inorganic polyphosphate/ATP-NAD kinase
1736	 67.97	0	1921201..1922964	+	587	148661493	recN	MRA_1705	-	DNA repair protein RecN
1737	 63.20	0	1923060..1924241	+	393	148661494	-	MRA_1706	-	hypothetical protein
1738	 64.76	0	1924263..1925207	+	314	148661495	-	MRA_1707	-	hypothetical protein
1739	 62.35	0	1925347..1927107	+	586	148661496	pyrG	MRA_1708	-	CTP synthetase
1740	 63.94	0	1927100..1927723	+	207	148661497	-	MRA_1709	-	MutT/nudix family protein
1741	 67.20	0	1927720..1928655	+	311	148661498	xerD	MRA_1710	-	site-specific tyrosine recombinase XerD
1742	 67.03	0	1928729..1930093	-	454	148661499	-	MRA_1711	-	hypothetical protein
1743	 63.28	0	1930649..1931239	-	196	148661500	-	MRA_1712	-	catechol-O-methyltransferase
1744	 63.26	0	1931304..1932974	-	556	148661501	cycA	MRA_1713	-	D-serine/alanine/glycine transporter protein CycA
1745	 67.62	0	1933015..1934172	-	385	148661502	-	MRA_1714	-	PPE family protein
1746	 67.93	0	1934212..1935396	-	394	148661503	-	MRA_1715	-	PPE family protein
1747	 63.69	0	1936000..1936167	-	55	148661504	-	MRA_1716	-	hypothetical protein
1748	 62.97	0	1936400..1937860	+	486	148661505	-	MRA_1717	-	sulfate transporter
1749	 64.99	0	1937878..1938834	+	318	148661506	-	MRA_1718	-	putative initiation inhibitor protein
1750	 64.28	0	1938831..1939667	+	278	148661507	-	MRA_1719	-	segregation and condensation protein
1751	 65.09	0	1939664..1940359	+	231	148661508	-	MRA_1720	-	hypothetical protein
1752	 65.23	0	1940356..1941120	+	254	148661509	-	MRA_1721	-	RNA pseudouridylate synthase
1753	 65.95	0	1941117..1941809	+	230	148661510	cmk	MRA_1722	-	cytidylate kinase
1754	 68.82	+1	1941806..1943197	+	463	148661511	engA	MRA_1723	-	GTP-binding protein EngA
1755	 69.00	+1	1943371..1944183	+	270	148661512	-	MRA_1724	-	putative oxidoreductase
1756	 69.40	+1	1944177..1945091	+	304	148661513	fadB3	MRA_1725	-	3-hydroxyacyl-CoA dehydrogenase family protein
1757	 65.94	0	1945094..1945924	+	276	148661514	-	MRA_1726	-	hypothetical protein
1758	 69.52	+1	1945924..1946274	+	116	148661515	-	MRA_1727	-	hypothetical protein
1759	 66.79	0	1946327..1947145	+	272	148661516	-	MRA_1728	-	hypothetical protein
1760	 70.26	+1	1947159..1947938	+	259	148661517	-	MRA_1729	-	Crp family transcriptional regulator
1761	 63.59	0	1948548..1948937	-	129	148661518	-	MRA_1730	-	hypothetical protein
1762	 64.91	0	1948934..1949161	-	75	148661519	-	MRA_1731	-	hypothetical protein
1763	 67.00	0	1949379..1950863	+	494	148661520	-	MRA_1732	-	biotin carboxylase-like protein
1764	 69.07	+1	1950860..1952107	+	415	148661521	-	MRA_1733	-	putative hydrolase
1765	 55.71	-2	1952150..1952569	-	139	148661522	-	MRA_1734	-	hypothetical protein
1766	 68.64	0	1952559..1953269	-	236	148661523	-	MRA_1735	-	hypothetical protein
1767	 68.33	0	1953370..1954755	+	461	148661524	-	MRA_1736	-	oxidoreductase
1768	 69.47	+1	1954788..1955357	+	189	148661525	-	MRA_1737	-	hypothetical protein
1769	 62.65	0	1955382..1956152	-	256	148661526	-	MRA_1738	-	hypothetical protein
1770	 62.73	0	1956149..1957087	-	312	148661527	-	MRA_1739	-	hypothetical protein
1771	 61.20	-1	1957210..1958763	-	517	148661528	-	MRA_1740	-	putative penicillin-binding protein
1772	 65.77	0	1959195..1960751	+	518	148661529	gabD2	MRA_1741	-	succinic semialdehyde dehydrogenase
1773	 69.58	+1	1960761..1961309	-	182	148661530	-	MRA_1742	-	hypothetical protein
1774	 66.19	0	1961373..1962005	-	210	148661531	-	MRA_1743	-	putative transmembrane protein
1775	 64.20	0	1962292..1962534	-	80	148661532	-	MRA_1744	-	hypothetical protein
1776	 64.86	0	1962809..1963306	-	165	148661533	-	MRA_1745	-	hypothetical protein
1777	 60.08	-1	1963405..1963647	-	80	148661534	-	MRA_1746	-	hypothetical protein
1778	 68.15	0	1963746..1965704	-	652	148661535	narX	MRA_1747	-	nitrate reductase NarX
1779	 70.20	+1	1965701..1966888	-	395	148661536	narK2	MRA_1748	-	putative nitrate/nitrite transporter NarK2
1780	 59.76	-1	1967127..1967459	+	110	148661537	-	MRA_1749	-	hypothetical protein
1781	 62.86	0	1967473..1969155	-	560	148661538	-	MRA_1750	-	sulfate transporter
1782	 66.67	0	1969223..1969435	+	70	148661539	-	MRA_1751	-	hypothetical protein
1783	 59.44	-1	1969435..1969683	+	82	148661540	-	MRA_1752	-	hypothetical protein
1784	 66.80	0	1969691..1970428	+	245	148661541	-	MRA_1753	-	hypothetical protein
1785	 65.67	0	1970522..1972222	+	566	148661542	pknE	MRA_1754	-	serine/threonine protein kinase
1786	 66.92	0	1972507..1972908	-	133	148661543	-	MRA_1755	-	hypothetical protein
1787	 64.87	0	1972898..1973509	-	203	148661544	idi	MRA_1756	-	isopentenyl-diphosphate delta-isomerase
1788	 67.51	0	1973656..1975086	+	476	148661545	pknF	MRA_1757	-	serine/threonine protein kinase
1789	 65.78	0	1975148..1977745	+	865	148661546	-	MRA_1758	-	ABC transporter ATP-binding protein
1790	 65.98	0	1978118..1978849	+	243	148661547	-	MRA_1759	-	hypothetical protein
1791	 62.19	0	1978846..1979403	-	185	148661548	-	MRA_1760	-	putative integral membrane protein
1792	 62.91	0	1979487..1981085	-	532	148661549	fadD1	MRA_1761	-	acyl-CoA synthetase
1793	 65.22	0	1981139..1982521	+	460	148661550	-	MRA_1762	-	hypothetical protein
1794	 65.11	0	1982648..1983097	+	149	148661551	-	MRA_1763	-	hypothetical protein
1795	 61.57	-1	1983132..1986293	-	1053	148661552	-	MRA_1764	-	PPE family protein
1796	 62.17	0	1986497..1988188	-	563	148661553	-	MRA_1765	-	hypothetical protein
1797	 60.27	-1	1988372..1989403	-	343	148661554	plcD	MRA_1766	-	putative phospholipase C 4 PlcD
1798	 63.84	0	1989483..1990367	-	294	148661555	-	MRA_1767	-	IS6110 transposase
1799	 65.75	0	1990418..1990744	-	108	148661556	-	MRA_1768	-	IS6110 hypothetical protein
1800	 62.83	0	1990519..1991274	-	251	148661557	-	MRA_1768A	-	hypothetical protein
1801	 65.62	0	1991403..1992548	-	381	148661558	-	MRA_1768B	-	hypothetical protein
1802	 65.00	0	1992738..1993877	+	379	148661559	-	MRA_1768C	-	putative sulfite oxidase
1803	 62.76	0	1994078..1996915	+	945	148661560	mmpL14	MRA_1768D	-	putative transmembrane transport protein MmpL14
1804	 63.84	0	1997429..1998313	-	294	148661561	-	MRA_1769	-	IS6110 transposase
1805	 65.75	0	1998364..1998690	-	108	148661562	-	MRA_1770	-	IS6110 hypothetical protein
1806	 64.38	0	1998726..1999250	+	174	148661563	cut1	MRA_1771	-	putative cutinase Cut1
1807	 70.06	+1	2001912..2002382	-	156	148661564	-	MRA_1772	-	PE-PGRS family protein
1808	 62.39	0	2002424..2002657	+	77	148661565	-	MRA_1773	-	hypothetical protein
1809	 64.88	0	2002838..2004346	+	502	148661566	-	MRA_1774	-	hypothetical protein
1810	 64.32	0	2004356..2004739	-	127	148661567	-	MRA_1775	-	hypothetical protein
1811	 62.36	0	2004739..2005527	-	262	148661568	-	MRA_1776	-	hypothetical protein
1812	 65.75	0	2005837..2006163	+	108	148661569	-	MRA_1777	-	IS6110 hypothetical protein
1813	 63.84	0	2006214..2007098	+	294	148661570	-	MRA_1778	-	IS6110 transposase
1814	 64.83	0	2006965..2007345	+	126	148661571	-	MRA_1779	-	truncated IS6110 transposase
65.43	MEAN

3.37	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.