IslandPathversion 1.0

IslandPath Analysis: Mycobacterium tuberculosis H37Ra



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 65.43 STD DEV: 3.37
Mycobacterium tuberculosis H37Ra, complete genome - 1..4419977
4034 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1636	 64.72	0	1800591..1801001	-	136	148661393	-	MRA_1608	-	hypothetical protein
1637	 69.63	+1	1801101..1802417	+	438	148661394	hisD	MRA_1609	-	histidinol dehydrogenase
1638	 63.08	0	1802414..1803556	+	380	148661395	hisC1	MRA_1610	-	histidinol-phosphate aminotransferase
1639	 63.82	0	1803553..1804185	+	210	148661396	hisB	MRA_1611	-	imidazoleglycerol-phosphate dehydratase
1640	 64.41	0	1804182..1804802	+	206	148661397	hisH	MRA_1612	-	imidazole glycerol phosphate synthase subunit HisH
1641	 66.67	0	1804812..1805549	+	245	148661398	hisA	MRA_1613	-	1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase
1642	 65.07	0	1805557..1806369	+	270	148661399	impA	MRA_1614	-	inositol-monophosphatase ImpA
1643	 68.16	0	1806371..1807174	+	267	148661400	hisF	MRA_1615	-	imidazole glycerol phosphate synthase subunit HisF
1644	 62.07	0	1807171..1807518	+	115	148661401	hisI	MRA_1616	-	phosphoribosyl-AMP cyclohydrolase
1645	 66.48	0	1807699..1808781	+	360	148661402	chaA	MRA_1617	-	cation/proton antiporter
1646	 61.29	-1	1808816..1809280	-	154	148661403	bcpB	MRA_1618	-	putative peroxidoxin BcpB
1647	 65.38	0	1809421..1810971	+	516	148661404	trpE	MRA_1619	-	anthranilate synthase component I
1648	 70.48	+1	1810961..1811668	+	235	148661405	-	MRA_1620	-	hypothetical protein
1649	 66.30	0	1811758..1812576	+	272	148661406	trpC	MRA_1621	-	indole-3-glycerol-phosphate synthase
1650	 62.77	0	1812645..1813877	+	410	148661407	trpB	MRA_1622	-	tryptophan synthase subunit beta
1651	 65.81	0	1813877..1814689	+	270	148661408	trpA	MRA_1623	-	tryptophan synthase subunit alpha
1652	 64.39	0	1814689..1816095	+	468	148661409	lgt	MRA_1624	-	prolipoprotein diacylglyceryl transferase
1653	 63.72	0	1816771..1817211	+	146	148661410	-	MRA_1625	-	hypothetical protein
1654	 63.41	0	1817201..1817599	+	132	148661411	-	MRA_1626	-	hypothetical protein
1655	 66.31	0	1817707..1819125	+	472	148661412	pykA	MRA_1627	-	pyruvate kinase
1656	 62.24	0	1819133..1820035	+	300	148661413	tesB1	MRA_1628	-	acyl-CoA thioesterase II
1657	 65.98	0	1820093..1821547	+	484	148661414	-	MRA_1629	-	hypothetical protein
1658	 69.15	+1	1821481..1823211	-	576	148661415	cydC	MRA_1630	-	component linked with the assembly of cytochrome' ABC transporter ATP-binding protein CydC
1659	 68.62	0	1823208..1824791	-	527	148661416	cydD	MRA_1631	-	component linked with the assembly of cytochrome' ABC transporter ATP-binding protein CydD
1660	 63.78	0	1824878..1825918	-	346	148661417	cydB	MRA_1632	-	cytochrome d ubiquinol oxidase subunit II
1661	 61.39	-1	1825948..1827405	-	485	148661418	cydA	MRA_1633	-	cytochrome d ubiquinol oxidase subunit I
1662	 61.05	-1	1827516..1828103	-	195	148661419	-	MRA_1634	-	hypothetical protein
1663	 65.47	0	1828132..1829463	-	443	148661420	cya	MRA_1635	-	membrane-anchored adenylyl cyclase Cya
1664	 61.65	-1	1829698..1830315	+	205	148661421	-	MRA_1636	-	putative two-component system transcriptional regulator
1665	 67.66	0	1830383..1831591	-	402	148661422	-	MRA_1637	-	lipid-transfer protein
1666	 66.06	0	1831588..1832079	-	163	148661423	-	MRA_1638	-	hypothetical protein
1667	 67.48	0	1832183..1834897	+	904	148661424	polA	MRA_1639	-	DNA polymerase I
1668	 62.93	0	1835060..1836505	+	481	148661425	rpsA	MRA_1640	-	30S ribosomal protein S1
1669	 67.16	0	1836531..1837754	+	407	148661426	coaE	MRA_1641	-	fused dephospho-CoA kinase/unknown domain-containing protein
1670	 67.12	0	1837905..1838348	-	147	148661427	-	MRA_1642	-	hypothetical protein
1671	 66.05	0	1838593..1840689	+	698	148661428	uvrB	MRA_1643	-	excinuclease ABC subunit B
1672	 67.02	0	1840686..1842101	+	471	148661429	-	MRA_1644	-	putative drug transporter
1673	 65.17	0	1842090..1843760	-	556	148661430	-	MRA_1645	-	putative transmembrane protein
1674	 63.72	0	1843969..1844409	+	146	148661431	-	MRA_1646	-	hypothetical protein
1675	 66.54	0	1844416..1845210	-	264	148661432	-	MRA_1647	-	hypothetical protein
1676	 66.32	0	1845259..1848177	+	972	148661433	uvrA	MRA_1648	-	excinuclease ABC subunit A
1677	 65.50	0	1848234..1848491	-	85	148661434	-	MRA_1649	-	hypothetical protein
1678	 66.53	0	1848507..1849976	-	489	148661435	-	MRA_1650	-	hypothetical protein
1679	 64.65	0	1850035..1853553	-	1172	148661436	lysS	MRA_1651	-	lysyl-tRNA synthetase
1680	 62.63	0	1853728..1854396	+	222	148661437	infC	MRA_1652	-	translation initiation factor IF-3
1681	 68.21	0	1854446..1854640	+	64	148661438	rpmI	MRA_1653	-	50S ribosomal protein L35
1682	 66.15	0	1854702..1855091	+	129	148661439	rplT	MRA_1654	-	50S ribosomal protein L20
1683	 69.60	+1	1855124..1855906	+	260	148661440	tsnR	MRA_1655	-	putative 23S rRNA methyltransferase TsnR
1684	 63.45	0	1855917..1856972	-	351	148661441	-	MRA_1656	-	hypothetical protein
1685	 65.17	0	1857282..1858214	+	310	148661442	-	MRA_1657	-	PE family protein
1686	 66.88	0	1858292..1859242	+	316	148661443	-	MRA_1658	-	hypothetical protein
1687	 66.67	0	1859249..1860055	+	268	148661444	-	MRA_1659	-	putative transmembrane protein
1688	 66.28	0	1860251..1861276	+	341	148661445	pheS	MRA_1660	-	phenylalanyl-tRNA synthetase subunit alpha
1689	 68.95	+1	1861276..1863771	+	831	148661446	pheT	MRA_1661	-	phenylalanyl-tRNA synthetase subunit beta
1690	 71.15	+1	1863865..1866900	-	1011	148661447	-	MRA_1662	-	PE-PGRS family protein
1691	 69.69	+1	1867094..1868152	+	352	148661448	argC	MRA_1663	-	N-acetyl-gamma-glutamyl-phosphate reductase
1692	 71.19	+1	1868149..1869363	+	404	148661449	argJ	MRA_1664	-	bifunctional ornithine acetyltransferase/N-acetylglutamate synthase protein
1693	 68.25	0	1869360..1870244	+	294	148661450	argB	MRA_1665	-	acetylglutamate kinase
1694	 71.82	+1	1870241..1871443	+	400	148661451	argD	MRA_1666	-	acetylornithine aminotransferase
1695	 68.83	+1	1871440..1872363	+	307	148661452	argF	MRA_1667	-	ornithine carbamoyltransferase
1696	 72.90	+2	1872360..1872872	+	170	148661453	argR	MRA_1668	-	arginine repressor
1697	 67.84	0	1872881..1874077	+	398	148661454	argG	MRA_1669	-	argininosuccinate synthase
1698	 71.05	+1	1874157..1875569	+	470	148661455	argH	MRA_1670	-	argininosuccinate lyase
1699	 66.48	0	1875678..1876739	+	353	148661456	pks10	MRA_1671	-	putative chalcone synthase Pks10
1700	 67.37	0	1876822..1883202	+	2126	148661457	pks7	MRA_1672	-	putative polyketide synthase Pks7
1701	 64.84	0	1883222..1888030	+	1602	148661458	pks8	MRA_1673	-	putative polyketide synthase Pks8
1702	 62.96	0	1888030..1889538	+	502	148661459	pks17	MRA_1674	-	putative polyketide synthase Pks17
1703	 63.79	0	1889544..1892597	+	1017	148661460	pks9	MRA_1675	-	putative polyketide synthase Pks9
1704	 65.35	0	1892744..1893805	+	353	148661461	pks11	MRA_1676	-	putative chalcone synthase Pks11
1705	 65.74	0	1893788..1895080	-	430	148661462	cyp139	MRA_1677	-	putative cytochrome P450 139 CYP139
1706	 66.21	0	1895095..1895748	-	217	148661463	-	MRA_1678	-	macrolide ABC transporter ATP-binding protein
1707	 68.36	0	1895742..1896860	-	372	148661464	-	MRA_1679	-	macrolide ABC transporter ATP-binding protein
1708	 60.61	-1	1897243..1897605	+	120	148661465	-	MRA_1679A	-	hypothetical protein
1709	 61.21	-1	1897638..1897985	+	115	148661466	-	MRA_1680	-	hypothetical protein
1710	 62.09	0	1897993..1898385	+	130	148661467	-	MRA_1681	-	hypothetical protein
1711	 67.64	0	1898394..1899725	-	443	148661468	-	MRA_1682	-	phthalate permease family protein
1712	 63.99	0	1899818..1900750	-	310	148661469	-	MRA_1683	-	hypothetical protein
1713	 64.38	0	1900778..1901434	-	218	148661470	-	MRA_1684	-	transcription regulator ArsR
1714	 69.93	+1	1901490..1901765	+	91	148661471	-	MRA_1685	-	hypothetical protein
1715	 64.63	0	1901759..1902493	-	244	148661472	-	MRA_1686	-	Crp/Fnr family transcriptional regulator
1716	 61.99	-1	1902565..1903269	+	234	148661473	-	MRA_1687	-	hypothetical protein
1717	 63.75	0	1903266..1903814	+	182	148661474	dsbF	MRA_1688	-	putative lipoprotein DsbF
1718	 69.10	+1	1903915..1904817	+	300	148661475	-	MRA_1689	-	hypothetical protein
1719	 67.47	0	1904817..1905938	+	373	148661476	fadE16	MRA_1690	-	acyl-CoA dehydrogenase FadE16
1720	 64.85	0	1905947..1906771	+	274	148661477	-	MRA_1691	-	hypothetical protein
1721	 68.28	0	1906768..1907760	+	330	148661478	moeX	MRA_1692	-	molybdopterin biosynthesis protein MoeX
1722	 60.02	-1	1907921..1908838	+	305	148661479	-	MRA_1693	-	hypothetical protein
1723	 65.77	0	1909112..1912111	+	999	148661480	-	MRA_1694	-	acyl-CoA synthetase
1724	 68.89	+1	1912104..1912328	+	74	148661481	-	MRA_1694A	-	hypothetical protein
1725	 62.82	0	1912294..1912917	-	207	148661482	-	MRA_1695	-	hypothetical protein
1726	 63.44	0	1912919..1913599	-	226	148661483	-	MRA_1696	-	multidrug resistance ABC transporter permease protein
1727	 63.93	0	1913671..1914438	-	255	148661484	-	MRA_1697	-	multidrug resistance ABC transporter ATP-binding protein
1728	 70.59	+1	1914497..1915108	+	203	148661485	mpg	MRA_1698	-	3-methyladenine DNA glycosylase
1729	 64.71	0	1915120..1916394	+	424	148661486	tyrS	MRA_1699	-	tyrosyl-tRNA synthetase
1730	 62.76	0	1917045..1917428	+	127	148661487	lprJ	MRA_1700	-	putative lipoprotein LprJ
1731	 70.39	+1	1917467..1918219	+	250	148661488	-	MRA_1701	-	hypothetical protein
1732	 68.55	0	1918216..1919277	+	353	148661489	-	MRA_1702	-	putative phosphatase
1733	 63.84	0	1919274..1919450	+	58	148661490	-	MRA_1702A	-	hypothetical protein
1734	 69.52	+1	1919458..1920264	+	268	148661491	tlyA	MRA_1703	-	cytotoxin/hemolysin
1735	 64.94	0	1920264..1921187	+	307	148661492	ppnK	MRA_1704	-	inorganic polyphosphate/ATP-NAD kinase
65.43	MEAN

3.37	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.