IslandPathversion 1.0

IslandPath Analysis: Mycobacterium tuberculosis H37Ra



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 65.43 STD DEV: 3.37
Mycobacterium tuberculosis H37Ra, complete genome - 1..4419977
4034 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1450	 67.31	0	1592999..1593463	+	154	148661207	ribH	MRA_1425	-	riboflavin synthase subunit beta
1451	 66.67	0	1593460..1593924	+	154	148661208	-	MRA_1426	-	hypothetical protein
1452	 66.08	0	1593949..1594635	+	228	148661209	lprH	MRA_1427	-	putative lipoprotein LprH
1453	 63.29	0	1594815..1595288	+	157	148661210	-	MRA_1428	-	hypothetical protein
1454	 65.43	0	1595352..1597292	+	646	148661211	uvrC	MRA_1429	-	excinuclease ABC subunit C
1455	 64.46	0	1597289..1598194	+	301	148661212	-	MRA_1430	-	hypothetical protein
1456	 68.71	0	1598191..1599219	+	342	148661213	-	MRA_1431	-	hypothetical protein
1457	 68.81	+1	1599216..1600193	+	325	148661214	whiA	MRA_1432	-	putative transcriptional regulatory protein WhiA
1458	 62.47	0	1600203..1600964	-	253	148661215	-	MRA_1433	-	hypothetical protein
1459	 65.36	0	1600968..1602347	+	459	148661216	-	MRA_1434	-	hypothetical protein
1460	 67.38	0	1602369..1603631	-	420	148661217	lipO	MRA_1435	-	esterase LipO
1461	 66.42	0	1603631..1605238	-	535	148661218	fadD12	MRA_1436	-	acyl-CoA synthetase
1462	 63.65	0	1605242..1606069	-	275	148661219	-	MRA_1437	-	hypothetical protein
1463	 65.25	0	1606188..1607456	+	422	148661220	-	MRA_1438	-	hypothetical protein
1464	 64.02	0	1607696..1609282	+	528	148661221	-	MRA_1439	-	PE family protein
1465	 62.26	0	1609393..1611162	+	589	148661222	-	MRA_1440	-	hypothetical protein
1466	 69.97	+1	1611159..1612580	+	473	148661223	-	MRA_1441	-	putative dehydrogenase
1467	 64.09	0	1612744..1613559	+	271	148661224	-	MRA_1442	-	hypothetical protein
1468	 73.91	+2	1613566..1613703	+	45	148661225	-	MRA_1442A	-	hypothetical protein
1469	 68.64	0	1613652..1614260	-	202	148661226	-	MRA_1443	-	hypothetical protein
1470	 63.14	0	1614617..1615636	+	339	148661227	gap	MRA_1444	-	glyceraldehyde-3-phosphate dehydrogenase
1471	 64.57	0	1615639..1616877	+	412	148661228	pgk	MRA_1445	-	phosphoglycerate kinase
1472	 64.12	0	1616874..1617659	+	261	148661229	tpiA	MRA_1446	-	triosephosphate isomerase
1473	 62.44	0	1618271..1618696	-	141	148661230	-	MRA_1447	-	hypothetical protein
1474	 64.25	0	1618967..1619380	+	137	148661231	secG	MRA_1448	-	protein-export membrane protein
1475	 76.23	+2	1619519..1620982	-	487	148661232	-	MRA_1449	-	PE-PGRS family protein
1476	 67.23	0	1621101..1623401	+	766	148661233	bisC	MRA_1450	-	putative biotin sulfoxide reductase BisC
1477	 65.64	0	1623517..1624002	-	161	148661234	-	MRA_1451	-	hypothetical protein
1478	 57.92	-2	1624078..1624317	+	79	148661235	-	MRA_1452	-	hypothetical protein
1479	 63.26	0	1624597..1625007	-	136	148661236	-	MRA_1453	-	hypothetical protein
1480	 67.88	0	1625024..1625767	-	247	148661237	devB	MRA_1454	-	6-phosphogluconolactonase
1481	 66.89	0	1625764..1626675	-	303	148661238	opcA	MRA_1455	-	oxppcycle protein OpcA
1482	 65.89	0	1626728..1628272	-	514	148661239	zwf2	MRA_1456	-	glucose-6-phosphate 1-dehydrogenase
1483	 64.17	0	1628269..1629390	-	373	148661240	tal	MRA_1457	-	transaldolase
1484	 67.76	0	1629407..1631509	-	700	148661241	tkt	MRA_1458	-	transketolase
1485	 78.32	+2	1631948..1636144	-	1398	148661242	-	MRA_1459	-	PE-PGRS family protein
1486	 66.13	0	1636546..1637472	+	308	148661243	ctaB	MRA_1460	-	protoheme IX farnesyltransferase
1487	 77.27	+2	1637521..1639746	-	741	148661244	-	MRA_1461	-	PE-PGRS family protein
1488	 64.06	0	1639898..1641163	+	421	148661245	-	MRA_1462	-	hypothetical protein
1489	 67.17	0	1641191..1642177	-	328	148661246	qor	MRA_1463	-	putative quinone reductase Qor
1490	 66.78	0	1642197..1643060	+	287	148661247	-	MRA_1464	-	hypothetical protein
1491	 68.70	0	1643010..1643942	-	310	148661248	-	MRA_1465	-	antibiotic ABC transporter permease
1492	 66.16	0	1644054..1644839	-	261	148661249	-	MRA_1466	-	antibiotic ABC transporter permease
1493	 67.73	0	1644836..1645777	-	313	148661250	-	MRA_1467	-	antibiotic ABC transporter ATP-binding protein
1494	 66.95	0	1645880..1647655	-	591	148661251	-	MRA_1468	-	putative integral membrane protein
1495	 69.76	+1	1647703..1648509	+	268	148661252	-	MRA_1469	-	putative transcriptional regulatory protein
1496	 61.71	-1	1648506..1651046	+	846	148661253	-	MRA_1470	-	iron-regulated ABC transporter permease protein
1497	 67.59	0	1651043..1652236	+	397	148661254	-	MRA_1471	-	hypothetical protein
1498	 65.17	0	1652233..1653033	+	266	148661255	-	MRA_1472	-	iron-regulated ABC transporter ATP-binding protein
1499	 67.86	0	1653035..1654288	+	417	148661256	csd	MRA_1473	-	cysteine desulfurase Csd
1500	 64.01	0	1654285..1654773	+	162	148661257	-	MRA_1474	-	nitrogen fixation protein NifU-related protein
1501	 65.80	0	1654748..1655095	+	115	148661258	-	MRA_1475	-	hypothetical protein
1502	 63.77	0	1655190..1657019	-	609	148661259	fadE15	MRA_1476	-	acyl-CoA dehydrogenase FadE15
1503	 75.38	+2	1657126..1658238	-	370	148661260	-	MRA_1477	-	PE-PGRS family protein
1504	 66.77	0	1658480..1660453	+	657	148661261	ctpD	MRA_1478	-	metal cation transporting P-type ATPase CtpD
1505	 57.33	-2	1660497..1660871	+	124	148661262	trxA	MRA_1479	-	putative thioredoxin TrxA
1506	 63.44	0	1660887..1661258	+	123	148661263	trxB1	MRA_1480	-	thioredoxin TrxB1
1507	 64.92	0	1661280..1662137	+	285	148661264	echA12	MRA_1481	-	enoyl-CoA hydratase
1508	 67.10	0	1662173..1663801	+	542	148661265	-	MRA_1482	-	macrolide ABC transporter ATP-binding protein
1509	 67.71	0	1663898..1664089	+	63	148661266	-	MRA_1483	-	putative transcriptional regulatory protein
1510	 66.49	0	1664158..1664721	-	187	148661267	-	MRA_1484	-	putative transcriptional regulatory protein
1511	 62.99	0	1664732..1667563	-	943	148661268	acn	MRA_1485	-	aconitate hydratase
1512	 63.46	0	1667721..1668281	+	186	148661269	-	MRA_1486	-	hypothetical protein
1513	 67.02	0	1668507..1669925	+	472	148661270	-	MRA_1487	-	invasion protein
1514	 67.22	0	1669936..1670661	+	241	148661271	-	MRA_1488	-	invasion protein
1515	 65.70	0	1670800..1671933	+	377	148661272	moxR1	MRA_1489	-	putative transcriptional regulatory protein MoxR1
1516	 68.34	0	1671930..1672883	+	317	148661273	-	MRA_1490	-	hypothetical protein
1517	 65.58	0	1672894..1673901	+	335	148661274	-	MRA_1491	-	hypothetical protein
1518	 65.72	0	1673974..1674816	-	280	148661275	-	MRA_1492	-	hypothetical protein
1519	 64.38	0	1674957..1675700	+	247	148661276	fabG1	MRA_1493	-	3-oxoacyl-(acyl-carrier-protein) reductase FabG1
1520	 65.43	0	1675719..1676528	+	269	148661277	inhA	MRA_1494	-	enoyl-(acyl carrier protein) reductase
1521	 66.09	0	1676534..1677568	+	344	148661278	hemH	MRA_1495	-	ferrochelatase
1522	 66.44	0	1677534..1678400	-	288	148661279	-	MRA_1495A	-	hypothetical protein
1523	 67.13	0	1678458..1678892	+	144	148661280	-	MRA_1496	-	hypothetical protein
1524	 66.58	0	1678914..1680059	+	381	148661281	-	MRA_1497	-	hypothetical protein
1525	 63.03	0	1680069..1680425	+	118	148661282	-	MRA_1498	-	hypothetical protein
1526	 68.83	+1	1680459..1680689	+	76	148661283	-	MRA_1499	-	hypothetical protein
1527	 57.03	-2	1680839..1682146	+	435	148661284	-	MRA_1500	-	hypothetical protein
1528	 66.93	0	1682725..1683483	-	252	148661285	-	MRA_1501	-	hypothetical protein
1529	 70.29	+1	1683674..1685521	+	615	148661286	mutA	MRA_1502	-	putative methylmalonyl-CoA mutase small subunit MutA
1530	 67.11	0	1685522..1687774	+	750	148661287	mutB	MRA_1503	-	methylmalonyl-CoA mutase
1531	 64.03	0	1687788..1688090	+	100	148661288	-	MRA_1504	-	hypothetical protein
1532	 63.21	0	1688087..1688404	+	105	148661289	-	MRA_1505	-	hypothetical protein
1533	 67.76	0	1688401..1689405	+	334	148661290	-	MRA_1506	-	arginine/ornithine transport system ATPase
1534	 67.52	0	1689458..1690747	+	429	148661291	lipL	MRA_1507	-	putative esterase LipL
1535	 58.74	-1	1690820..1691437	-	205	148661292	-	MRA_1508	-	methyltransferase
1536	 62.91	0	1691651..1691863	-	70	148661293	-	MRA_1509	-	hypothetical protein
1537	 66.17	0	1691924..1692322	+	132	148661294	-	MRA_1510	-	hypothetical protein
1538	 54.91	-2	1692367..1693395	+	342	148661295	-	MRA_1511	-	putative dolichol-phosphate mannosyltransferase
1539	 54.14	-2	1693407..1694228	+	273	148661296	-	MRA_1512	-	hypothetical protein
1540	 56.22	-2	1694441..1695340	+	299	148661297	-	MRA_1513	-	hypothetical protein
1541	 60.54	-1	1695513..1695953	-	146	148661298	-	MRA_1514	-	hypothetical protein
1542	 60.83	-1	1696062..1696661	-	199	148661299	-	MRA_1515	-	hypothetical protein
1543	 54.65	-2	1696798..1697463	-	221	148661300	-	MRA_1516	-	hypothetical protein
1544	 54.29	-2	1697460..1697960	-	166	148661301	-	MRA_1517	-	hypothetical protein
1545	 51.58	-2	1698244..1698939	-	231	148661302	-	MRA_1518	-	hypothetical protein
1546	 62.94	0	1699612..1701411	-	599	148661303	-	MRA_1519	-	hypothetical protein
1547	 58.95	-1	1701383..1701745	+	120	148661304	-	MRA_1520	-	hypothetical protein
1548	 57.03	-2	1701729..1702610	+	293	148661305	-	MRA_1521	-	hypothetical protein
1549	 68.59	0	1702812..1704110	+	432	148661306	-	MRA_1522	-	hypothetical protein
65.43	MEAN

3.37	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.