IslandPathversion 1.0

IslandPath Analysis: Mycobacterium tuberculosis H37Ra



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 65.43 STD DEV: 3.37
Mycobacterium tuberculosis H37Ra, complete genome - 1..4419977
4034 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1354	 63.40	0	1486623..1487081	-	152	148661111	-	MRA_1330	-	hypothetical protein
1355	 65.56	0	1487172..1488341	+	389	148661112	fadA4	MRA_1331	-	acetyl-CoA acetyltransferase
1356	 65.57	0	1488471..1489385	+	304	148661113	-	MRA_1332	-	thioredoxin-related protein
1357	 77.65	+2	1489464..1491275	-	603	148661114	-	MRA_1333	-	PE-PGRS family protein
1358	 64.03	0	1491427..1493622	-	731	148661115	glgB	MRA_1334	-	glycogen branching enzyme
1359	 64.43	0	1493630..1495735	-	701	148661116	glgE	MRA_1335	-	putative glucanase GlgE
1360	 65.82	0	1495874..1498465	+	863	148661117	glgP	MRA_1336	-	glycogen phosphorylase family protein
1361	 67.32	0	1498505..1500499	-	664	148661118	dinG	MRA_1337	-	ATP-dependent helicase DinG
1362	 68.82	+1	1500523..1501869	-	448	148661119	-	MRA_1338	-	nicotinate phosphoribosyltransferase
1363	 61.44	-1	1501971..1502276	+	101	148661120	clpS	MRA_1339	-	ATP-dependent Clp protease adaptor protein ClpS
1364	 63.32	0	1502236..1502892	+	218	148661121	-	MRA_1340	-	putative transcriptional regulatory protein
1365	 69.95	+1	1502909..1503943	+	344	148661122	-	MRA_1341	-	putative hydrolase
1366	 63.49	0	1503951..1504391	+	146	148661123	-	MRA_1342	-	hypothetical protein
1367	 63.83	0	1504413..1504694	+	93	148661124	cfp10a	MRA_1343	-	antigen Cfp10A
1368	 66.67	0	1504704..1505675	+	323	148661125	cysM	MRA_1344	-	cysteine synthase
1369	 62.93	0	1505666..1506388	+	240	148661126	-	MRA_1345	-	putative integral membrane protein
1370	 66.05	0	1506385..1507200	+	271	148661127	murI	MRA_1346	-	glutamate racemase
1371	 64.11	0	1507227..1508048	+	273	148661128	-	MRA_1347	-	hypothetical protein
1372	 65.26	0	1508065..1508844	+	259	148661129	rph	MRA_1348	-	ribonuclease PH
1373	 68.62	0	1508883..1509497	+	204	148661130	-	MRA_1349	-	putative deoxyribonucleotide triphosphate pyrophosphatase
1374	 62.81	0	1509494..1509856	-	120	148661131	-	MRA_1350	-	hypothetical protein
1375	 62.99	0	1509853..1510233	-	126	148661132	lprD	MRA_1351	-	putative lipoprotein LprD
1376	 59.81	-1	1510278..1510598	+	106	148661133	-	MRA_1352	-	acyl carrier protein
1377	 67.24	0	1510591..1512156	+	521	148661134	fadD33	MRA_1353	-	acyl-CoA synthetase
1378	 64.94	0	1512156..1513316	+	386	148661135	fadE14	MRA_1354	-	acyl-CoA dehydrogenase FadE14
1379	 62.40	0	1513283..1513915	-	210	148661136	mbtK	MRA_1355	-	lysine N-acyltransferase MbtK
1380	 66.28	0	1514357..1516936	+	859	148661137	-	MRA_1356	-	drugs ABC transporter ATP-binding protein
1381	 67.13	0	1516933..1518672	+	579	148661138	-	MRA_1357	-	drugs ABC transporter ATP-binding protein
1382	 60.75	-1	1518801..1519544	+	247	148661139	fabG	MRA_1358	-	3-ketoacyl-(acyl-carrier-protein) reductase
1383	 59.09	-1	1519541..1519870	+	109	148661140	-	MRA_1359	-	hypothetical protein
1384	 62.10	0	1520073..1520444	+	123	148661141	-	MRA_1360	-	hypothetical protein
1385	 62.60	0	1520510..1521295	-	261	148661142	-	MRA_1361	-	TetR/AcrR family transcriptional regulator
1386	 61.59	-1	1521315..1523186	-	623	148661143	-	MRA_1362	-	hypothetical protein
1387	 61.64	-1	1523195..1525342	-	715	148661144	moeY	MRA_1363	-	hypothetical protein
1388	 57.95	-2	1525339..1526130	-	263	148661145	-	MRA_1364	-	hypothetical protein
1389	 62.34	0	1526603..1527526	-	307	148661146	-	MRA_1365	-	hypothetical protein
1390	 62.47	0	1527922..1531401	+	1159	148661147	-	MRA_1366	-	LuxR family transcriptional regulator
1391	 62.15	0	1531483..1532235	+	250	148661148	-	MRA_1367	-	putative transcriptional regulatory protein
1392	 60.00	-1	1532283..1532507	-	74	148661149	-	MRA_1368	-	hypothetical protein
1393	 63.64	0	1532658..1533680	+	340	148661150	-	MRA_1369	-	N5,N10-methylenetetrahydromethanopterin reductase-related protein
1394	 67.93	0	1533753..1534943	-	396	148661151	-	MRA_1370	-	PPE family protein
1395	 61.09	-1	1535258..1535920	-	220	148661152	-	MRA_1371	-	hypothetical protein
1396	 63.74	0	1535917..1536702	-	261	148661153	-	MRA_1372	-	hypothetical protein
1397	 65.44	0	1536993..1538954	-	653	148661154	-	MRA_1373	-	hypothetical protein
1398	 65.12	0	1539093..1539479	-	128	148661155	rsfA	MRA_1374	-	anti-anti-sigma factor RsfA
1399	 62.41	0	1539700..1540521	+	273	148661156	-	MRA_1375	-	hypothetical protein
1400	 60.92	-1	1540490..1540750	+	86	148661157	-	MRA_1376	-	hypothetical protein
1401	 66.31	0	1540822..1541955	-	377	148661158	-	MRA_1377	-	hypothetical protein
1402	 64.12	0	1542330..1543115	+	261	148661159	lprF	MRA_1378	-	putative lipoprotein LprF
1403	 63.84	0	1543304..1544188	-	294	148661160	-	MRA_1379	-	IS6110 transposase
1404	 65.75	0	1544239..1544565	-	108	148661161	-	MRA_1380	-	IS6110 hypothetical protein
1405	 60.54	-1	1544669..1546138	+	489	148661162	-	MRA_1381	-	desaturase-related protein
1406	 62.61	0	1546135..1547316	+	393	148661163	-	MRA_1382	-	hypothetical protein
1407	 64.22	0	1547322..1548302	+	326	148661164	-	MRA_1383	-	glycolipid sulfotransferase
1408	 60.35	-1	1548382..1548840	-	152	148661165	-	MRA_1383A	-	hypothetical protein
1409	 66.44	0	1549142..1550461	+	439	148661166	-	MRA_1384	-	hypothetical protein
1410	 66.73	0	1550458..1551951	+	497	148661167	-	MRA_1385	-	hypothetical protein
1411	 66.67	0	1551889..1552527	-	212	148661168	-	MRA_1386	-	hypothetical protein
1412	 69.68	+1	1552538..1553965	-	475	148661169	-	MRA_1387	-	hypothetical protein
1413	 68.21	0	1553964..1554545	+	193	148661170	pyrR	MRA_1388	-	pyrimidine regulatory protein PyrR
1414	 67.81	0	1554542..1555501	+	319	148661171	pyrB	MRA_1389	-	aspartate carbamoyltransferase catalytic subunit
1415	 69.68	+1	1555498..1556790	+	430	148661172	pyrC	MRA_1390	-	dihydroorotase
1416	 67.87	0	1556787..1557284	+	165	148661173	-	MRA_1391	-	putative export protein
1417	 67.73	0	1557281..1558411	+	376	148661174	carA	MRA_1392	-	carbamoyl phosphate synthase small subunit
1418	 67.00	0	1558411..1561758	+	1115	148661175	carB	MRA_1393	-	carbamoyl phosphate synthase large subunit
1419	 72.97	+2	1561755..1562579	+	274	148661176	pyrF	MRA_1394	-	orotidine 5'-phosphate decarboxylase
1420	 68.28	0	1562774..1563082	+	102	148661177	-	MRA_1395	-	PE family protein
1421	 65.49	0	1563079..1564698	+	539	148661178	-	MRA_1396	-	PPE family protein
1422	 63.18	0	1565004..1565576	+	190	148661179	mihF	MRA_1397	-	putative integration host factor MihF
1423	 65.71	0	1565711..1566337	+	208	148661180	gmk	MRA_1398	-	guanylate kinase
1424	 62.16	0	1566403..1566735	+	110	148661181	rpoZ	MRA_1399	-	DNA-directed RNA polymerase subunit omega
1425	 67.78	0	1566751..1568007	+	418	148661182	dfp	MRA_1400	-	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase
1426	 66.67	0	1568135..1569346	+	403	148661183	metK	MRA_1401	-	S-adenosylmethionine synthetase
1427	 64.16	0	1569419..1570897	-	492	148661184	-	MRA_1402	-	putative monooxygenase
1428	 64.07	0	1570894..1572279	-	461	148661185	cyp132	MRA_1403	-	putative cytochrome p450 132 CYP132
1429	 63.57	0	1572357..1573391	+	344	148661186	-	MRA_1404	-	putative transcriptional regulatory protein
1430	 77.37	+2	1573437..1575230	-	597	148661187	-	MRA_1405	-	PE-PGRS family protein
1431	 62.69	0	1575422..1575823	-	133	148661188	-	MRA_1406	-	hypothetical protein
1432	 63.57	0	1575820..1576077	-	85	148661189	-	MRA_1407	-	hypothetical protein
1433	 67.92	0	1576160..1577119	-	319	148661190	lipH	MRA_1408	-	lipase LipH
1434	 67.39	0	1577144..1578106	-	320	148661191	lipI	MRA_1409	-	putative lipase/esterase
1435	 66.83	0	1578240..1578842	+	200	148661192	-	MRA_1410	-	hypothetical protein
1436	 72.71	+2	1578923..1580890	+	655	148661193	priA	MRA_1411	-	primosome assembly protein PriA
1437	 65.70	0	1580908..1581732	-	274	148661194	-	MRA_1412	-	putative methyltransferase
1438	 63.56	0	1581901..1582383	+	160	148661195	-	MRA_1413	-	putative transcriptional regulatory protein
1439	 65.33	0	1582455..1583279	-	274	148661196	-	MRA_1414	-	putative methyltransferase
1440	 69.86	+1	1583476..1584414	+	312	148661197	fmt	MRA_1415	-	methionyl-tRNA formyltransferase
1441	 70.96	+1	1584411..1585784	+	457	148661198	fmu	MRA_1416	-	Fmu protein
1442	 67.10	0	1585809..1586507	+	232	148661199	rpe	MRA_1417	-	ribulose-phosphate 3-epimerase
1443	 67.94	0	1586504..1587523	+	339	148661200	ribG	MRA_1418	-	riboflavin-specific deaminase
1444	 65.57	0	1587520..1589076	-	518	148661201	-	MRA_1419	-	aminoglycosides/tetracycline-transport integral membrane protein
1445	 65.12	0	1589082..1589792	-	236	148661202	lprG	MRA_1420	-	lipoprotein LprG
1446	 65.68	0	1589877..1590482	+	201	148661203	ribC	MRA_1421	-	riboflavin synthase subunit alpha
1447	 67.83	0	1590696..1591211	+	171	148661204	-	MRA_1422	-	hypothetical protein
1448	 66.67	0	1591201..1591602	+	133	148661205	-	MRA_1423	-	hypothetical protein
1449	 64.16	0	1591707..1592984	+	425	148661206	ribA2	MRA_1424	-	bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II protein
1450	 67.31	0	1592999..1593463	+	154	148661207	ribH	MRA_1425	-	riboflavin synthase subunit beta
1451	 66.67	0	1593460..1593924	+	154	148661208	-	MRA_1426	-	hypothetical protein
1452	 66.08	0	1593949..1594635	+	228	148661209	lprH	MRA_1427	-	putative lipoprotein LprH
1453	 63.29	0	1594815..1595288	+	157	148661210	-	MRA_1428	-	hypothetical protein
65.43	MEAN

3.37	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.