IslandPathversion 1.0

IslandPath Analysis: Mycobacterium tuberculosis H37Ra



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 65.43 STD DEV: 3.37
Mycobacterium tuberculosis H37Ra, complete genome - 1..4419977
4034 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1130	 61.92	-1	1230701..1231858	-	385	148660887	-	MRA_1112	-	hypothetical protein
1131	 61.86	-1	1231970..1232281	-	103	148660888	-	MRA_1113	-	hypothetical protein
1132	 64.49	0	1232281..1232601	-	106	148660889	-	MRA_1114	-	hypothetical protein
1133	 66.81	0	1232611..1233300	+	229	148660890	-	MRA_1115	-	putative para-nitrobenzyl esterase
1134	 63.76	0	1233621..1234136	+	171	148660891	-	MRA_1116	-	putative para-nitrobenzyl esterase
1135	 64.87	0	1234154..1235266	-	370	148660892	-	MRA_1117	-	3-beta hydroxysteroid dehydrogenase/isomerase family protein
1136	 62.40	0	1235276..1235533	-	85	148660893	xseB	MRA_1118	-	exodeoxyribonuclease VII small subunit
1137	 68.67	0	1235523..1236770	-	415	148660894	xseA	MRA_1119	-	exodeoxyribonuclease VII large subunit
1138	 64.32	0	1236767..1237405	-	212	148660895	-	MRA_1120	-	hypothetical protein
1139	 65.87	0	1237495..1238502	+	335	148660896	ispH	MRA_1121	-	4-hydroxy-3-methylbut-2-enyl diphosphate reductase
1140	 67.58	0	1238519..1239502	-	327	148660897	-	MRA_1122	-	hypothetical protein
1141	 65.74	0	1239565..1240638	+	357	148660898	-	MRA_1123	-	translation-associated GTPase
1142	 68.18	0	1240726..1240923	+	65	148660899	-	MRA_1123A	-	hypothetical protein
1143	 64.27	0	1240920..1241294	+	124	148660900	-	MRA_1124	-	hypothetical protein
1144	 62.66	0	1241497..1242195	+	232	148660901	-	MRA_1125	-	hypothetical protein
1145	 63.41	0	1242425..1242700	-	91	148660902	-	MRA_1126	-	hypothetical protein
1146	 62.96	0	1242943..1243266	+	107	148660903	-	MRA_1127	-	hypothetical protein
1147	 67.25	0	1243281..1244141	-	286	148660904	-	MRA_1128	-	hypothetical protein
1148	 68.00	0	1244174..1244323	-	49	148660905	-	MRA_1128A	-	hypothetical protein
1149	 65.25	0	1244320..1244814	-	164	148660906	-	MRA_1129	-	hypothetical protein
1150	 63.81	0	1245017..1246417	+	466	148660907	zwf1	MRA_1130	-	glucose-6-phosphate 1-dehydrogenase
1151	 65.69	0	1246439..1247461	+	340	148660908	gnd2	MRA_1131	-	6-phosphogluconate dehydrogenase-like protein
1152	 66.78	0	1247454..1248362	-	302	148660909	bpoB	MRA_1132	-	putative peroxidase BpoB
1153	 67.82	0	1248437..1249387	+	316	148660910	ephC	MRA_1133	-	putative epoxide hydrolase EphC
1154	 68.43	0	1249392..1250636	+	414	148660911	-	MRA_1134	-	hypothetical protein
1155	 65.35	0	1250640..1251245	-	201	148660912	-	MRA_1135	-	hypothetical protein
1156	 66.53	0	1251242..1252714	-	490	148660913	ppdK	MRA_1136	-	pyruvate phosphate dikinase
1157	 64.82	0	1252927..1254282	-	451	148660914	-	MRA_1137	-	hypothetical protein
1158	 65.37	0	1254384..1255844	-	486	148660915	-	MRA_1138	-	putative transcriptional regulator protein
1159	 65.59	0	1255865..1257445	+	526	148660916	-	MRA_1139	-	MmgE/PrpD family protein
1160	 66.16	0	1257442..1258623	+	393	148660917	gltA1	MRA_1140	-	methylcitrate synthase
1161	 63.32	0	1258635..1260365	+	576	148660918	-	MRA_1141	-	hypothetical protein
1162	 69.17	+1	1260377..1262656	-	759	148660919	metE	MRA_1142	-	5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase
1163	 71.31	+1	1263232..1263468	+	78	148660920	-	MRA_1143	-	hypothetical protein
1164	 64.14	0	1263582..1265438	-	618	148660921	-	MRA_1144	-	PPE family protein
1165	 58.85	-1	1265624..1265866	+	80	148660922	-	MRA_1145	-	putative acetyl-CoA acetyltransferase
1166	 66.08	0	1265916..1266257	+	113	148660923	-	MRA_1146	-	enoyl-CoA hydratase/isomerase family protein
1167	 66.17	0	1266344..1266748	+	134	148660924	-	MRA_1147	-	hypothetical protein
1168	 67.26	0	1266782..1267798	-	338	148660925	-	MRA_1148	-	putative oxidoreductase
1169	 63.87	0	1267795..1268295	-	166	148660926	-	MRA_1149	-	hypothetical protein
1170	 64.55	0	1268657..1269505	+	282	148660927	-	MRA_1150	-	hypothetical protein
1171	 65.68	0	1269513..1270319	-	268	148660928	echA11	MRA_1151	-	enoyl-CoA hydratase
1172	 67.29	0	1270462..1271268	-	268	148660929	echA10	MRA_1152	-	enoyl-CoA hydratase
1173	 65.84	0	1271372..1272454	+	360	148660930	mcr	MRA_1153	-	putative alpha-methylacyl-CoA racemase Mcr
1174	 66.80	0	1272466..1273218	+	250	148660931	-	MRA_1154	-	putative short-chain type dehydrogenase/reductase
1175	 63.71	0	1273733..1274644	+	303	148660932	mmpL13a	MRA_1155	-	putative transmembrane transport protein MmpL13a
1176	 64.67	0	1274578..1276077	+	499	148660933	mmpL13b	MRA_1156	-	putative transmembrane transport protein MmpL13b
1177	 68.82	+1	1276210..1276860	+	216	148660934	-	MRA_1157	-	hypothetical protein
1178	 64.32	0	1277610..1279058	-	482	148660935	-	MRA_1158	-	hypothetical protein
1179	 64.46	0	1279203..1279610	+	135	148660936	-	MRA_1159	-	ISMt1 transposase A
1180	 65.05	0	1279267..1280130	+	287	148660937	-	MRA_1160	-	ISMt1 transposase B
1181	 66.81	0	1280214..1280927	-	237	148660938	-	MRA_1161	-	NAD-dependent deacetylase
1182	 67.76	0	1280965..1281330	+	121	148660939	-	MRA_1162	-	GntR family transcriptional regulator
1183	 64.66	0	1281308..1282156	-	282	148660940	omt	MRA_1163	-	putative O-methyltransferase
1184	 62.31	0	1282153..1282794	-	213	148660941	-	MRA_1164	-	hypothetical protein
1185	 62.39	0	1282739..1283182	+	147	148660942	-	MRA_1165	-	hypothetical protein
1186	 63.78	0	1283616..1284203	+	195	148660943	-	MRA_1166	-	hypothetical protein
1187	 69.89	+1	1284366..1285481	-	371	148660944	-	MRA_1167	-	hypothetical protein
1188	 73.10	+2	1285489..1286172	-	227	148660945	-	MRA_1168	-	hypothetical protein
1189	 65.05	0	1286302..1287597	+	431	148660946	pimE	MRA_1169	-	mannosyltransferase
1190	 57.89	-2	1287594..1287878	-	94	148660947	phhB	MRA_1170	-	pterin-4-alpha-carbinolamine dehydratase
1191	 68.54	0	1287905..1288330	+	141	148660948	mutT2	MRA_1171	-	putative mutator protein MutT2
1192	 64.56	0	1288638..1292336	+	1232	148660949	narG	MRA_1172	-	putative respiratory nitrate reductase alpha chain NarG
1193	 64.88	0	1292375..1294051	+	558	148660950	narH	MRA_1173	-	putative respiratory nitrate reductase subunit beta NarH
1194	 70.13	+1	1294108..1294713	+	201	148660951	narJ	MRA_1174	-	respiratory nitrate reductase delta chain NarJ
1195	 63.16	0	1294716..1295456	+	246	148660952	narI	MRA_1175	-	putative respiratory nitrate reductase gamma chain NarI
1196	 66.67	0	1295478..1297364	+	628	148660953	typA	MRA_1176	-	GTP-binding elongation factor family protein
1197	 67.14	0	1297462..1299369	+	635	148660954	lpqW	MRA_1177	-	putative lipoprotein LpqW
1198	 65.68	0	1299397..1300002	-	201	148660955	-	MRA_1178	-	putative transcriptional regulatory protein
1199	 64.17	0	1300074..1301114	-	346	148660956	-	MRA_1179	-	PPE family protein
1200	 58.75	-1	1301132..1301434	-	100	148660957	-	MRA_1180	-	PE family protein
1201	 67.54	0	1301614..1302525	+	303	148660958	mshB	MRA_1181	-	N-Acetyl-1-D-myo-Inosityl-2-amino-2-deoxy-alpha- D-glucopyranoside deacetylase MshB
1202	 65.76	0	1302617..1303057	+	146	148660959	-	MRA_1182	-	hypothetical protein
1203	 64.94	0	1303065..1303991	-	308	148660960	-	MRA_1183	-	PE family protein
1204	 66.63	0	1304241..1306811	+	856	148660961	fbiC	MRA_1184	-	FO synthase
1205	 63.96	0	1306979..1307311	-	110	148660962	-	MRA_1185	-	T-cell antigen
1206	 65.23	0	1307512..1309536	-	674	148660963	fadH	MRA_1186	-	2,4-dienoyl-CoA reductase
1207	 64.39	0	1309533..1310102	-	189	148660964	-	MRA_1187	-	hypothetical protein
1208	 61.16	-1	1310315..1310641	+	108	148660965	fdxC	MRA_1188	-	ferredoxin FdxC
1209	 68.69	0	1310674..1311762	+	362	148660966	-	MRA_1189	-	N-succinyldiaminopimelate aminotransferase
1210	 68.55	0	1311790..1314609	-	939	148660967	-	MRA_1190	-	hypothetical protein
1211	 65.85	0	1315036..1321293	+	2085	148660968	pks3	MRA_1191	-	polyketide beta-ketoacyl synthase Pks3
1212	 60.25	-1	1321346..1322764	+	472	148660969	papA3	MRA_1192	-	putative polyketide synthase associated protein PapA3
1213	 61.38	-1	1322831..1325839	+	1002	148660970	mmpL10	MRA_1193	-	transmembrane transport protein MmpL10
1214	 63.43	0	1325843..1326922	-	359	148660971	-	MRA_1194	-	hypothetical protein
1215	 59.93	-1	1327087..1328823	-	578	148660972	fadD21	MRA_1195	-	acyl-CoA synthetase
1216	 68.52	0	1329000..1330616	-	538	148660973	-	MRA_1196	-	hypothetical protein
1217	 66.79	0	1330701..1332332	+	543	148660974	rocA	MRA_1197	-	delta-1-pyrroline-5-carboxylate dehydrogenase
1218	 69.29	+1	1332332..1333321	+	329	148660975	-	MRA_1198	-	proline dehydrogenase family protein
1219	 65.52	0	1333403..1334275	+	290	148660976	sigI	MRA_1199	-	RNA polymerase sigma factor SigI
1220	 67.46	0	1334291..1335169	+	292	148660977	-	MRA_1200	-	hypothetical protein
1221	 68.09	0	1335242..1336156	+	304	148660978	-	MRA_1201	-	hypothetical protein
1222	 67.75	0	1336238..1337065	+	275	148660979	-	MRA_1202	-	hypothetical protein
1223	 68.35	0	1337105..1338526	+	473	148660980	fadD36	MRA_1203	-	acyl-CoA synthetase
1224	 64.61	0	1338559..1339824	-	421	148660981	-	MRA_1204	-	hypothetical protein
1225	 65.80	0	1340266..1340613	+	115	148660982	-	MRA_1205	-	PE family protein
1226	 68.63	0	1340660..1341679	+	339	148660983	-	MRA_1205A	-	PPE family protein
1227	 62.63	0	1341969..1342265	+	98	148660984	esxK	MRA_1206	-	esat-6 like protein EsxK
1228	 63.16	0	1342316..1342600	+	94	148660985	esxL	MRA_1207	-	putative esat-6 like protein EsxL
1229	 66.43	0	1342668..1343915	-	415	148660986	-	MRA_1208	-	IS1081 transposase
65.43	MEAN

3.37	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.