IslandPathversion 1.0

IslandPath Analysis: Mycobacterium tuberculosis H37Ra



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 65.43 STD DEV: 3.37
Mycobacterium tuberculosis H37Ra, complete genome - 1..4419977
4034 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1057	 66.32	0	1157161..1157730	+	189	148660814	kdpC	MRA_1039	-	potassium-transporting ATPase subunit C
1058	 64.97	0	1157734..1159263	-	509	148660815	trcS	MRA_1040	-	two component sensor histidine kinase TrcS
1059	 62.02	-1	1159271..1160044	-	257	148660816	trcR	MRA_1041	-	DNA-binding response regulator TrcR
1060	 68.21	0	1160226..1160615	-	129	148660817	-	MRA_1042	-	putative transposase
1061	 70.89	+1	1160683..1161369	-	228	148660818	-	MRA_1043	-	putative transposase
1062	 61.65	-1	1161403..1161741	-	112	148660819	-	MRA_1044	-	truncated IS1560 transposase
1063	 63.16	0	1161852..1162136	-	94	148660820	esxV1	MRA_1045	-	putative esat-6 like protein EsxV
1064	 63.30	0	1162163..1162459	-	98	148660821	esxJ	MRA_1046	-	esat-6 like protein EsxJ
1065	 68.96	+1	1162605..1163780	-	391	148660822	-	MRA_1047	-	PPE family protein
1066	 68.96	+1	1163857..1164684	-	275	148660823	-	MRA_1048	-	PE family protein
1067	 65.05	0	1165472..1165780	-	102	148660824	-	MRA_1049	-	hypothetical protein
1068	 65.05	0	1165880..1166743	-	287	148660825	-	MRA_1050	-	ISMt1 transposase B
1069	 64.46	0	1166400..1166807	-	135	148660826	-	MRA_1051	-	ISMt1 transposase A
1070	 64.33	0	1167089..1168114	-	341	148660827	-	MRA_1052	-	hypothetical protein
1071	 64.74	0	1168361..1168984	+	207	148660828	-	MRA_1053	-	hypothetical protein
1072	 62.36	0	1168981..1169862	+	293	148660829	-	MRA_1054	-	hypothetical protein
1073	 63.64	0	1169944..1170537	-	197	148660830	-	MRA_1055	-	hypothetical protein
1074	 66.59	0	1170732..1171979	+	415	148660831	-	MRA_1056	-	IS1081 transposase
1075	 61.92	-1	1172347..1173462	-	371	148660832	-	MRA_1057	-	hypothetical protein
1076	 69.35	+1	1173695..1174141	+	148	148660833	-	MRA_1058	-	putative transcriptional repressor protein
1077	 67.44	0	1174190..1175095	+	301	148660834	-	MRA_1059	-	putative short-chain type dehydrogenase/reductase
1078	 65.87	0	1175254..1176009	-	251	148660835	-	MRA_1060	-	hypothetical protein
1079	 60.51	-1	1177032..1177421	+	129	148660836	-	MRA_1061	-	hypothetical protein
1080	 58.33	-2	1177320..1177595	-	91	148660837	-	MRA_1062	-	hypothetical protein
1081	 65.08	0	1178237..1178551	+	104	148660838	-	MRA_1063	-	hypothetical protein
1082	 64.52	0	1178404..1178682	+	92	148660839	-	MRA_1064	-	putative integrase
1083	 64.44	0	1178937..1179701	+	254	148660840	-	MRA_1065	-	hypothetical protein
1084	 64.63	0	1179913..1180059	-	48	148660841	-	MRA_1066	-	hypothetical protein
1085	 66.92	0	1180705..1181886	+	393	148660842	-	MRA_1067	-	hypothetical protein
1086	 63.24	0	1181993..1183624	+	543	148660843	fadD14	MRA_1068	-	acyl-CoA synthetase
1087	 64.88	0	1183700..1184764	+	354	148660844	-	MRA_1069	-	hypothetical protein
1088	 65.40	0	1184817..1185290	+	157	148660845	-	MRA_1070	-	hypothetical protein
1089	 63.54	0	1185324..1186187	+	287	148660846	-	MRA_1071	-	hypothetical protein
1090	 68.18	0	1186192..1187049	+	285	148660847	-	MRA_1072	-	hypothetical protein
1091	 68.79	0	1187050..1188132	-	360	148660848	-	MRA_1073	-	hypothetical protein
1092	 69.76	+1	1188213..1188632	-	139	148660849	lpqV	MRA_1074	-	putative lipoprotein LpqV
1093	 67.37	0	1188744..1189310	+	188	148660850	-	MRA_1075	-	hypothetical protein
1094	 73.23	+2	1189307..1189702	+	131	148660851	-	MRA_1076	-	hypothetical protein
1095	 78.44	+2	1189730..1191733	-	667	148660852	-	MRA_1077	-	PE-PGRS family protein
1096	 75.14	+2	1192066..1193457	-	463	148660853	-	MRA_1078	-	PE-PGRS family protein
1097	 64.85	0	1193819..1195582	-	587	148660854	-	MRA_1079	-	hypothetical protein
1098	 64.60	0	1195579..1196352	-	257	148660855	echA8	MRA_1080	-	enoyl-CoA hydratase
1099	 65.51	0	1196364..1197401	-	345	148660856	echA9	MRA_1081	-	enoyl-CoA hydratase
1100	 62.84	0	1197588..1198424	+	278	148660857	-	MRA_1082	-	putative transmembrane protein
1101	 62.32	0	1198540..1199391	+	283	148660858	-	MRA_1083	-	hypothetical protein
1102	 65.35	0	1199465..1200682	-	405	148660859	fadA3	MRA_1084	-	acetyl-CoA acetyltransferase
1103	 68.68	0	1200735..1201679	-	314	148660860	-	MRA_1085	-	hypothetical protein
1104	 65.21	0	1202076..1202969	+	297	148660861	lipU	MRA_1086	-	esterase LipU
1105	 66.38	0	1203026..1204420	+	464	148660862	cbs	MRA_1087	-	cysteine synthase/cystathionine beta-synthase family protein
1106	 66.25	0	1204622..1205344	+	240	148660863	pra	MRA_1088	-	putative proline rich antigen-like protein
1107	 64.78	0	1205376..1206542	+	388	148660864	metB	MRA_1089	-	cystathionine gamma-synthase
1108	 63.43	0	1206613..1207107	-	164	148660865	greA	MRA_1090	-	transcription elongation factor GreA
1109	 67.82	0	1207293..1207727	-	144	148660866	-	MRA_1091	-	hypothetical protein
1110	 65.97	0	1207829..1208695	+	288	148660867	mca	MRA_1092	-	mycothiol conjugate amidase Mca
1111	 62.92	0	1208692..1208958	+	88	148660868	-	MRA_1093	-	hypothetical protein
1112	 71.91	+1	1208945..1210966	+	673	148660869	-	MRA_1094	-	hypothetical protein
1113	 66.67	0	1211065..1211793	-	242	148660870	-	MRA_1095	-	putative hemolysin-like protein
1114	 65.02	0	1211904..1212692	+	262	148660871	-	MRA_1096	-	undecaprenyl diphosphate synthase
1115	 77.69	+2	1212869..1215172	+	767	148660872	-	MRA_1097	-	PE-PGRS family protein
1116	 64.17	0	1215349..1215669	+	106	148660873	-	MRA_1098	-	hypothetical protein
1117	 66.23	0	1215804..1216256	+	150	148660874	-	MRA_1099	-	PE family protein
1118	 66.67	0	1216826..1216930	+	34	148660875	celA2a	MRA_1100	-	cellulase CelA2a
1119	 61.40	-1	1216908..1217363	+	151	148660876	celA2b	MRA_1101	-	cellulase CelA2b
1120	 78.79	+2	1217778..1219517	+	579	148660877	-	MRA_1102	-	PE-PGRS family protein
1121	 62.83	0	1220558..1221496	-	312	148660878	coaA	MRA_1103	-	pantothenate kinase
1122	 67.14	0	1221884..1223164	+	426	148660879	glyA	MRA_1104	-	serine hydroxymethyltransferase
1123	 63.65	0	1223269..1224096	+	275	148660880	desA2	MRA_1105	-	putative acyl-(acyl-carrier-protein) desaturase
1124	 66.82	0	1224307..1225608	+	433	148660881	phoH2	MRA_1106	-	putative PhoH-like protein PhoH2
1125	 63.81	0	1225695..1226570	+	291	148660882	-	MRA_1107	-	putative polysaccharide deacetylase
1126	 65.87	0	1226573..1227454	-	293	148660883	-	MRA_1108	-	putative glycine and proline rich membrane protein
1127	 65.61	0	1227451..1228875	-	474	148660884	fumC	MRA_1109	-	fumarate hydratase
1128	 66.36	0	1228906..1229892	-	328	148660885	glpX	MRA_1110	-	fructose 1,6-bisphosphatase II
1129	 67.52	0	1229993..1230694	+	233	148660886	-	MRA_1111	-	hypothetical protein
1130	 61.92	-1	1230701..1231858	-	385	148660887	-	MRA_1112	-	hypothetical protein
1131	 61.86	-1	1231970..1232281	-	103	148660888	-	MRA_1113	-	hypothetical protein
1132	 64.49	0	1232281..1232601	-	106	148660889	-	MRA_1114	-	hypothetical protein
1133	 66.81	0	1232611..1233300	+	229	148660890	-	MRA_1115	-	putative para-nitrobenzyl esterase
1134	 63.76	0	1233621..1234136	+	171	148660891	-	MRA_1116	-	putative para-nitrobenzyl esterase
1135	 64.87	0	1234154..1235266	-	370	148660892	-	MRA_1117	-	3-beta hydroxysteroid dehydrogenase/isomerase family protein
1136	 62.40	0	1235276..1235533	-	85	148660893	xseB	MRA_1118	-	exodeoxyribonuclease VII small subunit
1137	 68.67	0	1235523..1236770	-	415	148660894	xseA	MRA_1119	-	exodeoxyribonuclease VII large subunit
1138	 64.32	0	1236767..1237405	-	212	148660895	-	MRA_1120	-	hypothetical protein
1139	 65.87	0	1237495..1238502	+	335	148660896	ispH	MRA_1121	-	4-hydroxy-3-methylbut-2-enyl diphosphate reductase
1140	 67.58	0	1238519..1239502	-	327	148660897	-	MRA_1122	-	hypothetical protein
1141	 65.74	0	1239565..1240638	+	357	148660898	-	MRA_1123	-	translation-associated GTPase
1142	 68.18	0	1240726..1240923	+	65	148660899	-	MRA_1123A	-	hypothetical protein
1143	 64.27	0	1240920..1241294	+	124	148660900	-	MRA_1124	-	hypothetical protein
1144	 62.66	0	1241497..1242195	+	232	148660901	-	MRA_1125	-	hypothetical protein
1145	 63.41	0	1242425..1242700	-	91	148660902	-	MRA_1126	-	hypothetical protein
1146	 62.96	0	1242943..1243266	+	107	148660903	-	MRA_1127	-	hypothetical protein
1147	 67.25	0	1243281..1244141	-	286	148660904	-	MRA_1128	-	hypothetical protein
1148	 68.00	0	1244174..1244323	-	49	148660905	-	MRA_1128A	-	hypothetical protein
1149	 65.25	0	1244320..1244814	-	164	148660906	-	MRA_1129	-	hypothetical protein
1150	 63.81	0	1245017..1246417	+	466	148660907	zwf1	MRA_1130	-	glucose-6-phosphate 1-dehydrogenase
1151	 65.69	0	1246439..1247461	+	340	148660908	gnd2	MRA_1131	-	6-phosphogluconate dehydrogenase-like protein
1152	 66.78	0	1247454..1248362	-	302	148660909	bpoB	MRA_1132	-	putative peroxidase BpoB
1153	 67.82	0	1248437..1249387	+	316	148660910	ephC	MRA_1133	-	putative epoxide hydrolase EphC
1154	 68.43	0	1249392..1250636	+	414	148660911	-	MRA_1134	-	hypothetical protein
1155	 65.35	0	1250640..1251245	-	201	148660912	-	MRA_1135	-	hypothetical protein
1156	 66.53	0	1251242..1252714	-	490	148660913	ppdK	MRA_1136	-	pyruvate phosphate dikinase
65.43	MEAN

3.37	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.