IslandPath Analysis: Mycobacterium tuberculosis H37Ra



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 65.43   STD DEV: 3.37
Mycobacterium tuberculosis H37Ra, complete genome - 1..4419977
4034 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1020	 67.32	0	1113692..1114768	+	358	148660777	-	MRA_1003	-	putative transmembrane protein
1021	 59.13	-1	1115169..1115420	+	83	148660778	-	MRA_1004	-	hypothetical protein
1022	 65.28	0	1115601..1116032	+	143	148660779	-	MRA_1006	-	hypothetical protein
1023	 65.47	0	1116056..1117057	+	333	148660780	-	MRA_1007	-	hypothetical protein
1024	 66.27	0	1117075..1117833	+	252	148660781	-	MRA_1008	-	hypothetical protein
1025	 66.50	0	1117839..1118456	-	205	148660782	-	MRA_1009	-	hypothetical protein
1026	 65.67	0	1118493..1119701	+	402	148660783	arcA	MRA_1010	-	arginine deiminase
1027	 66.34	0	1119736..1121247	-	503	148660784	-	MRA_1011	-	hypothetical protein
1028	 69.23	+1	1121330..1122187	+	285	148660785	-	MRA_1012	-	hypothetical protein
1029	 74.44	+2	1122197..1123495	-	432	148660786	-	MRA_1013	-	hypothetical protein
1030	 68.99	+1	1123530..1124906	-	458	148660787	pabB	MRA_1014	-	para-aminobenzoate synthase component I
1031	 65.02	0	1125022..1126725	+	567	148660788	-	MRA_1015	-	hypothetical protein
1032	 64.10	0	1126752..1128311	-	519	148660789	metG	MRA_1016	-	methionyl-tRNA synthetase
1033	 68.30	0	1128397..1129191	+	264	148660790	tatD	MRA_1017	-	putative deoxyribonuclease TatD
1034	 68.23	0	1129399..1130487	+	362	148660791	rpfB	MRA_1018	-	putative resuscitation-promoting factor RpfB
1035	 66.98	0	1130460..1131413	+	317	148660792	ksgA	MRA_1019	-	dimethyladenosine transferase
1036	 68.51	0	1131499..1132419	+	306	148660793	ispE	MRA_1020	-	4-diphosphocytidyl-2-C-methyl-D-erythritol kinase
1037	 67.69	0	1132436..1132729	+	97	148660794	-	MRA_1020A	-	hypothetical protein
1038	 66.24	0	1132933..1134567	+	544	148660795	pks16	MRA_1021	-	acyl-CoA synthetase
1039	 66.84	0	1134641..1135216	-	191	148660796	pth	MRA_1022	-	peptidyl-tRNA hydrolase
1040	 66.51	0	1135229..1135876	-	215	148660797	rplY	MRA_1023	-	50S ribosomal protein L25/general stress protein Ctc
1041	 61.82	-1	1136093..1136773	-	226	148660798	lpqT	MRA_1024	-	putative lipoprotein LpqT
1042	 64.02	0	1136809..1137789	-	326	148660799	prsA	MRA_1025	-	ribose-phosphate pyrophosphokinase
1043	 67.47	0	1137881..1139368	-	495	148660800	glmU	MRA_1026	-	UDP-N-acetylglucosamine pyrophosphorylase
1044	 64.98	0	1139623..1140216	+	197	148660801	-	MRA_1027	-	TetR family transcriptional regulator
1045	 68.77	0	1140275..1143979	+	1234	148660802	mfd	MRA_1028	-	transcription-repair coupling factor
1046	 62.07	0	1143979..1144956	+	325	148660803	-	MRA_1029	-	nucleoside triphosphate pyrophosphohydrolase
1047	 67.49	0	1145044..1145775	+	243	148660804	lpqU	MRA_1030	-	putative lipoprotein LpqU
1048	 66.74	0	1145872..1147161	+	429	148660805	eno	MRA_1031	-	phosphopyruvate hydratase
1049	 68.85	+1	1147166..1147852	+	228	148660806	-	MRA_1032	-	hypothetical protein
1050	 68.80	0	1147869..1148336	+	155	148660807	-	MRA_1033	-	hypothetical protein
1051	 68.96	+1	1148327..1149286	+	319	148660808	-	MRA_1034	-	hypothetical protein
1052	 63.29	0	1149735..1150415	-	226	148660809	kdpE	MRA_1035	-	transcriptional regulatory protein KdpE
1053	 67.25	0	1150412..1152994	-	860	148660810	kdpD	MRA_1036	-	sensor histidine kinase KdpD
1054	 56.99	-2	1153228..1153320	+	30	148660811	kdpF	MRA_1036A	-	putative membrane protein KdpF
1055	 63.46	0	1153320..1155035	+	571	148660812	kdpA	MRA_1037	-	potassium-transporting ATPase subunit A
1056	 65.63	0	1155032..1157161	+	709	148660813	kdpB	MRA_1038	-	potassium-transporting ATPase subunit B
1057	 66.32	0	1157161..1157730	+	189	148660814	kdpC	MRA_1039	-	potassium-transporting ATPase subunit C
1058	 64.97	0	1157734..1159263	-	509	148660815	trcS	MRA_1040	-	two component sensor histidine kinase TrcS
1059	 62.02	-1	1159271..1160044	-	257	148660816	trcR	MRA_1041	-	DNA-binding response regulator TrcR
1060	 68.21	0	1160226..1160615	-	129	148660817	-	MRA_1042	-	putative transposase
1061	 70.89	+1	1160683..1161369	-	228	148660818	-	MRA_1043	-	putative transposase
1062	 61.65	-1	1161403..1161741	-	112	148660819	-	MRA_1044	-	truncated IS1560 transposase
1063	 63.16	0	1161852..1162136	-	94	148660820	esxV1	MRA_1045	-	putative esat-6 like protein EsxV
1064	 63.30	0	1162163..1162459	-	98	148660821	esxJ	MRA_1046	-	esat-6 like protein EsxJ
1065	 68.96	+1	1162605..1163780	-	391	148660822	-	MRA_1047	-	PPE family protein
1066	 68.96	+1	1163857..1164684	-	275	148660823	-	MRA_1048	-	PE family protein
1067	 65.05	0	1165472..1165780	-	102	148660824	-	MRA_1049	-	hypothetical protein
1068	 65.05	0	1165880..1166743	-	287	148660825	-	MRA_1050	-	ISMt1 transposase B
1069	 64.46	0	1166400..1166807	-	135	148660826	-	MRA_1051	-	ISMt1 transposase A
1070	 64.33	0	1167089..1168114	-	341	148660827	-	MRA_1052	-	hypothetical protein
1071	 64.74	0	1168361..1168984	+	207	148660828	-	MRA_1053	-	hypothetical protein
1072	 62.36	0	1168981..1169862	+	293	148660829	-	MRA_1054	-	hypothetical protein
1073	 63.64	0	1169944..1170537	-	197	148660830	-	MRA_1055	-	hypothetical protein
1074	 66.59	0	1170732..1171979	+	415	148660831	-	MRA_1056	-	IS1081 transposase
1075	 61.92	-1	1172347..1173462	-	371	148660832	-	MRA_1057	-	hypothetical protein
1076	 69.35	+1	1173695..1174141	+	148	148660833	-	MRA_1058	-	putative transcriptional repressor protein
1077	 67.44	0	1174190..1175095	+	301	148660834	-	MRA_1059	-	putative short-chain type dehydrogenase/reductase
1078	 65.87	0	1175254..1176009	-	251	148660835	-	MRA_1060	-	hypothetical protein
1079	 60.51	-1	1177032..1177421	+	129	148660836	-	MRA_1061	-	hypothetical protein
1080	 58.33	-2	1177320..1177595	-	91	148660837	-	MRA_1062	-	hypothetical protein
1081	 65.08	0	1178237..1178551	+	104	148660838	-	MRA_1063	-	hypothetical protein
1082	 64.52	0	1178404..1178682	+	92	148660839	-	MRA_1064	-	putative integrase
1083	 64.44	0	1178937..1179701	+	254	148660840	-	MRA_1065	-	hypothetical protein
1084	 64.63	0	1179913..1180059	-	48	148660841	-	MRA_1066	-	hypothetical protein
1085	 66.92	0	1180705..1181886	+	393	148660842	-	MRA_1067	-	hypothetical protein
1086	 63.24	0	1181993..1183624	+	543	148660843	fadD14	MRA_1068	-	acyl-CoA synthetase
1087	 64.88	0	1183700..1184764	+	354	148660844	-	MRA_1069	-	hypothetical protein
1088	 65.40	0	1184817..1185290	+	157	148660845	-	MRA_1070	-	hypothetical protein
1089	 63.54	0	1185324..1186187	+	287	148660846	-	MRA_1071	-	hypothetical protein
1090	 68.18	0	1186192..1187049	+	285	148660847	-	MRA_1072	-	hypothetical protein
1091	 68.79	0	1187050..1188132	-	360	148660848	-	MRA_1073	-	hypothetical protein
1092	 69.76	+1	1188213..1188632	-	139	148660849	lpqV	MRA_1074	-	putative lipoprotein LpqV
1093	 67.37	0	1188744..1189310	+	188	148660850	-	MRA_1075	-	hypothetical protein
1094	 73.23	+2	1189307..1189702	+	131	148660851	-	MRA_1076	-	hypothetical protein
1095	 78.44	+2	1189730..1191733	-	667	148660852	-	MRA_1077	-	PE-PGRS family protein
1096	 75.14	+2	1192066..1193457	-	463	148660853	-	MRA_1078	-	PE-PGRS family protein
1097	 64.85	0	1193819..1195582	-	587	148660854	-	MRA_1079	-	hypothetical protein
1098	 64.60	0	1195579..1196352	-	257	148660855	echA8	MRA_1080	-	enoyl-CoA hydratase
1099	 65.51	0	1196364..1197401	-	345	148660856	echA9	MRA_1081	-	enoyl-CoA hydratase
1100	 62.84	0	1197588..1198424	+	278	148660857	-	MRA_1082	-	putative transmembrane protein
1101	 62.32	0	1198540..1199391	+	283	148660858	-	MRA_1083	-	hypothetical protein
1102	 65.35	0	1199465..1200682	-	405	148660859	fadA3	MRA_1084	-	acetyl-CoA acetyltransferase
1103	 68.68	0	1200735..1201679	-	314	148660860	-	MRA_1085	-	hypothetical protein
1104	 65.21	0	1202076..1202969	+	297	148660861	lipU	MRA_1086	-	esterase LipU
1105	 66.38	0	1203026..1204420	+	464	148660862	cbs	MRA_1087	-	cysteine synthase/cystathionine beta-synthase family protein
1106	 66.25	0	1204622..1205344	+	240	148660863	pra	MRA_1088	-	putative proline rich antigen-like protein
1107	 64.78	0	1205376..1206542	+	388	148660864	metB	MRA_1089	-	cystathionine gamma-synthase
1108	 63.43	0	1206613..1207107	-	164	148660865	greA	MRA_1090	-	transcription elongation factor GreA
1109	 67.82	0	1207293..1207727	-	144	148660866	-	MRA_1091	-	hypothetical protein
1110	 65.97	0	1207829..1208695	+	288	148660867	mca	MRA_1092	-	mycothiol conjugate amidase Mca
1111	 62.92	0	1208692..1208958	+	88	148660868	-	MRA_1093	-	hypothetical protein
1112	 71.91	+1	1208945..1210966	+	673	148660869	-	MRA_1094	-	hypothetical protein
1113	 66.67	0	1211065..1211793	-	242	148660870	-	MRA_1095	-	putative hemolysin-like protein
1114	 65.02	0	1211904..1212692	+	262	148660871	-	MRA_1096	-	undecaprenyl diphosphate synthase
1115	 77.69	+2	1212869..1215172	+	767	148660872	-	MRA_1097	-	PE-PGRS family protein
1116	 64.17	0	1215349..1215669	+	106	148660873	-	MRA_1098	-	hypothetical protein
1117	 66.23	0	1215804..1216256	+	150	148660874	-	MRA_1099	-	PE family protein
1118	 66.67	0	1216826..1216930	+	34	148660875	celA2a	MRA_1100	-	cellulase CelA2a
1119	 61.40	-1	1216908..1217363	+	151	148660876	celA2b	MRA_1101	-	cellulase CelA2b
65.43	MEAN

3.37	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.