IslandPath Analysis: Mycobacterium tuberculosis H37Ra



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 65.43   STD DEV: 3.37
Mycobacterium tuberculosis H37Ra, complete genome - 1..4419977
4034 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
55	 65.96	0	58768..59331	+	187	148659812	-	MRA_0055	-	hypothetical protein
56	 60.14	-1	59550..59840	+	96	148659813	rpsF	MRA_0056	-	30S ribosomal protein S6
57	 66.67	0	59944..60438	+	164	148659814	ssb	MRA_0057	-	single-strand DNA-binding protein
58	 64.71	0	60480..60734	+	84	148659815	rpsR	MRA_0058	-	30S ribosomal protein S18
59	 62.09	0	60767..61225	+	152	148659816	rplI	MRA_0059	-	50S ribosomal protein L9
60	 60.73	-1	61254..61775	+	173	148659817	-	MRA_0059A	-	hypothetical protein
61	 62.82	0	61754..64378	+	874	148659818	dnaB	MRA_0060	-	replicative DNA helicase
62	 61.90	-1	64558..65250	+	230	148659819	-	MRA_0061	-	hypothetical protein
63	 60.06	-1	65267..66325	+	352	148659820	-	MRA_0062	-	hypothetical protein
64	 61.74	-1	66349..66774	+	141	148659821	-	MRA_0063	-	hypothetical protein
65	 68.24	0	66910..68052	+	380	148659822	celA1	MRA_0064	-	cellulase
66	 67.22	0	68281..69720	+	479	148659823	-	MRA_0065	-	putative oxidoreductase
67	 63.64	0	69978..72917	+	979	148659824	-	MRA_0066	-	hypothetical protein
68	 62.44	0	73179..73580	+	133	148659825	-	MRA_0067	-	hypothetical protein
69	 61.80	-1	73632..75869	-	745	148659826	icd2	MRA_0068	-	isocitrate dehydrogenase (NADP) Icd2
70	 65.09	0	75987..76556	-	189	148659827	-	MRA_0069	-	TetR family transcriptional regulator
71	 65.79	0	76659..77570	+	303	148659828	-	MRA_0070	-	short chain dehydrogenase
72	 65.08	0	77595..78980	-	461	148659829	sdaA	MRA_0071	-	L-serine dehydratase
73	 66.12	0	78977..80254	-	425	148659830	glyA2	MRA_0072	-	serine hydroxymethyltransferase
74	 64.69	0	80844..81551	+	235	148659831	-	MRA_0073	-	putative maturase
75	 61.71	-1	81982..83031	+	349	148659832	-	MRA_0074	-	putative glutamine-transport transmembrane protein ABC transporter
76	 62.64	0	83034..84026	+	330	148659833	glnQ1	MRA_0075	-	glutamine-transport ATP-binding protein ABC transporter GlnQ
77	 66.02	0	84106..85341	+	411	148659834	-	MRA_0076	-	hypothetical protein
78	 64.11	0	85354..86526	+	390	148659835	-	MRA_0077	-	putative aminotransferase
79	 62.31	0	86541..86930	-	129	148659836	-	MRA_0078	-	hypothetical protein
80	 66.19	0	86994..87824	-	276	148659837	-	MRA_0079	-	putative oxidoreductase
81	 67.99	0	87886..88491	+	201	148659838	-	MRA_0080	-	putative transcriptional regulatory protein
82	 61.11	-1	88566..89159	-	197	148659839	-	MRA_0081	-	hypothetical protein
83	 62.32	0	89156..89362	-	68	148659840	-	MRA_0082	-	hypothetical protein
84	 68.13	0	89562..90383	+	273	148659841	-	MRA_0083	-	hypothetical protein
85	 68.85	+1	90380..90838	+	152	148659842	-	MRA_0084	-	hypothetical protein
86	 65.51	0	90933..91277	+	114	148659843	-	MRA_0085	-	putative transcriptional regulatory protein
87	 69.79	+1	91282..91761	+	159	148659844	-	MRA_0086	-	putative oxidoreductase
88	 71.19	+1	91758..93680	+	640	148659845	-	MRA_0087	-	putative NADH-ubiquinone oxidoreductase
89	 68.56	0	93686..94636	+	316	148659846	hycD	MRA_0088	-	formate hydrogenlyase HycD
90	 68.93	+1	94647..95309	+	220	148659847	hycP	MRA_0089	-	putative hydrogenase HycP
91	 68.92	+1	95309..96775	+	488	148659848	hycQ	MRA_0090	-	putative hydrogenase HycQ
92	 66.80	0	96772..98250	+	492	148659849	hycE	MRA_0091	-	putative formate hydrogenase HycE
93	 61.78	-1	98285..98959	+	224	148659850	-	MRA_0092	-	hypothetical protein
94	 67.00	0	99116..99709	+	197	148659851	-	MRA_0093	-	putative methyltransferase
95	 65.63	0	99838..100608	+	256	148659852	-	MRA_0094	-	hypothetical protein
96	 65.10	0	101042..101809	+	255	148659853	mtn	MRA_0095	-	putative 5-methylthioadenosine nucleosidase/S-adenosylhomocysteine nucleosidase
97	 67.54	0	101941..104226	+	761	148659854	ctpA	MRA_0096	-	cation transporter p-type ATPase A
98	 67.61	0	104173..105021	-	282	148659855	-	MRA_0097	-	hypothetical protein
99	 67.51	0	105068..106021	-	317	148659856	-	MRA_0098	-	hypothetical protein
100	 61.56	-1	106163..106573	-	136	148659857	-	MRA_0099	-	hypothetical protein
101	 65.09	0	106682..108073	+	463	148659858	-	MRA_0100	-	PPE family protein
102	 58.85	-1	108092..108961	+	289	148659859	-	MRA_0101	-	putative dioxygenase
103	 59.06	-1	108958..109509	+	183	148659860	-	MRA_0102	-	hypothetical protein
104	 62.66	0	109514..111136	+	540	148659861	fadD10	MRA_0103	-	acyl-CoA synthetase
105	 60.34	-1	111141..111377	+	78	148659862	-	MRA_0104	-	hypothetical protein
106	 61.29	-1	111359..111637	+	92	148659863	nrp1	MRA_0105	-	putative peptide synthetase
107	 65.27	0	111665..118897	+	2410	148659864	nrp2	MRA_0106	-	putative peptide synthetase
108	 65.06	0	119072..121057	+	661	148659865	-	MRA_0107	-	putative integral membrane protein
109	 66.09	0	121273..123531	-	752	148659866	ctpB	MRA_0108	-	cation-transporting P-type ATPase B
110	 63.83	0	123675..125189	+	504	148659867	-	MRA_0109	-	hypothetical protein
111	 67.37	0	125338..125622	-	94	148659868	rpmB	MRA_0110	-	50S ribosomal protein L28
112	 66.42	0	125732..126928	+	398	148659869	-	MRA_0111	-	hypothetical protein
113	 68.65	0	127001..131899	-	1632	148659870	ctpI2	MRA_0112	-	cation-transporter ATPase I CtpI
114	 60.95	-1	132253..132462	-	69	148659871	-	MRA_0114	-	hypothetical protein
115	 72.57	+2	132741..134231	+	496	148659872	-	MRA_0115	-	PE-PGRS family protein
116	 64.93	0	134379..135128	+	249	148659873	-	MRA_0116	-	rhomboid family protein
117	 65.69	0	135309..137366	+	685	148659874	-	MRA_0117	-	putative transmembrane acyltransferase
118	 55.90	-2	137648..138604	+	318	148659875	gca	MRA_0118	-	putative GDP-D-mannose dehydratase
119	 57.87	-2	138678..139268	+	196	148659876	gmhA	MRA_0119	-	putative phosphoheptose isomerase GmhA
120	 61.61	-1	139300..139872	+	190	148659877	gmhB	MRA_0120	-	D-alpha,beta-D-heptose-1,7-biphosphate phosphatase GmhB
121	 62.96	0	139872..141032	+	386	148659878	hddA	MRA_0121	-	D-alpha-D-heptose-7-phosphate kinase HddA
122	 63.33	0	141324..141503	+	59	148659879	-	MRA_0122	-	hypothetical protein
123	 63.23	0	141626..142381	-	251	148659880	-	MRA_0123	-	hypothetical protein
124	 63.60	0	142559..143503	+	314	148659881	oxyS	MRA_0124	-	oxidative stress response regulatory protein OxyS
125	 66.67	0	143487..145235	-	582	148659882	-	MRA_0125	-	putative oxalyl-CoA decarboxylase
126	 68.57	0	145408..146985	+	525	148659883	fadD7	MRA_0126	-	acyl-CoA synthetase
127	 65.92	0	146986..149130	-	714	148659884	fusA2	MRA_0127	-	elongation factor G
128	 66.21	0	149267..149701	-	144	148659885	-	MRA_0128	-	hypothetical protein
129	 61.79	-1	149850..150218	+	122	148659886	-	MRA_0129	-	hypothetical protein
130	 62.06	0	150215..150583	+	122	148659887	-	MRA_0130	-	hypothetical protein
131	 77.60	+2	150892..152355	+	487	148659888	-	MRA_0131	-	PE-PGRS family protein
132	 68.07	0	152507..153574	+	355	148659889	pepA	MRA_0132	-	putative serine protease
133	 62.90	0	153683..155488	+	601	148659890	treS	MRA_0133	-	trehalose synthase TreS
134	 65.64	0	155591..156958	+	455	148659891	-	MRA_0134	-	hypothetical protein
135	 61.54	-1	157026..157805	+	259	148659892	-	MRA_0135	-	putative transmembrane protein
136	 65.00	0	157937..158959	-	340	148659893	fbpC	MRA_0136	-	secreted antigen 86-C FbpC
137	 66.01	0	159206..159661	+	151	148659894	-	MRA_0137	-	hypothetical protein
138	 64.88	0	159674..161017	-	447	148659895	fadE1	MRA_0138	-	acyl-CoA dehydrogenase FadE1
139	 67.87	0	161059..162141	-	360	148659896	fgd2	MRA_0139	-	putative f420-dependent glucose-6-phosphate dehydrogenase Fgd2
140	 68.48	0	162228..162833	+	201	148659897	-	MRA_0140	-	putative puromycin N-acetyltransferase
141	 66.67	0	163130..164032	+	300	148659898	ephF	MRA_0141	-	epoxide hydrolase EphF
142	 65.02	0	164003..164608	-	201	148659899	-	MRA_0142	-	putative transcriptional regulatory protein
143	 65.69	0	164725..166050	+	441	148659900	cyp138	MRA_0143	-	putative cytochrome p450 138 CYP138
144	 63.93	0	166071..166619	-	182	148659901	msrA	MRA_0144	-	methionine sulfoxide reductase A
145	 63.69	0	166682..167185	+	167	148659902	-	MRA_0145	-	hypothetical protein
146	 67.55	0	167186..168208	+	340	148659903	-	MRA_0146	-	dihydroflavonol 4-reductase-related protein
147	 60.37	-1	168269..168649	+	126	148659904	-	MRA_0147	-	hypothetical protein
148	 60.58	-1	168630..169040	-	136	148659905	-	MRA_0148	-	hypothetical protein
149	 72.49	+2	169070..169996	+	308	148659906	-	MRA_0149	-	hypothetical protein
150	 67.14	0	170063..171541	-	492	148659907	-	MRA_0150	-	chloride channel
151	 63.58	0	171643..172485	+	280	148659908	-	MRA_0151	-	TetR family transcriptional regulator
152	 66.88	0	172574..173527	+	317	148659909	-	MRA_0152	-	hypothetical protein
153	 66.88	0	173570..174502	+	310	148659910	-	MRA_0153	-	hypothetical protein
154	 64.30	0	174597..176117	+	506	148659911	-	MRA_0154	-	putative aldehyde dehydrogenase (NAD+) dependent
65.43	MEAN

3.37	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.