IslandPath Analysis: Mycoplasma synoviae 53



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 28.74   STD DEV: 4.56
Mycoplasma synoviae 53, complete genome - 1..799476
672 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
26	 31.03	0	28390..30123	+	577	71894051	ulaA	MS53_0026	-	ascorbate-specific PTS system enzyme IIC
27	 30.16	0	30182..30433	+	83	71894052	-	MS53_0027	-	putative PTS system, IIB component
28	 28.42	0	30445..30912	+	155	71894053	sgaA	MS53_0028	-	pentitol phosphotransferase enzyme II, A component
29	 30.73	0	30922..31575	+	217	71894054	ulaD	MS53_0029	-	3-keto-L-gulonate-6-phosphate decarboxylase
30	 24.32	0	31553..32428	+	291	161611239	sgaU	MS53_0030	-	L-xylulose 5-phosphate 3-epimerase
31	 30.20	0	32428..33162	+	244	161611238	araD	MS53_0031	-	L-ribulose-5-phosphate 4-epimerase
32	 20.92	-1	33164..34516	+	450	71894057	-	MS53_0032	-	hypothetical protein
33	 25.00	0	35887..36678	-	263	71894058	-	MS53_0034	-	putative ABC transporter ATP binding protein
34	 19.59	-2	36688..37764	-	358	71894059	-	MS53_0035	-	hypothetical protein
35	 29.55	0	38025..39134	-	369	71894060	-	MS53_0036	-	hypothetical protein
36	 21.41	-1	39551..40573	+	340	71894061	-	MS53_0037	-	hypothetical protein
37	 35.80	+1	40633..40875	-	80	71894062	-	MS53_0038	-	hypothetical protein
38	 35.42	+1	40875..41114	-	79	71894063	-	MS53_0039	-	hypothetical protein
39	 20.51	-1	41408..41797	-	129	71894064	sipS	MS53_0040	-	signal peptidase I
40	 20.03	-1	41840..44026	-	728	71894065	-	MS53_0041	-	putative ABC transporter ATP-binding protein
41	 32.38	0	44141..44665	-	174	71894066	-	MS53_0042	-	hypothetical protein
42	 16.91	-2	44677..46338	-	553	71894067	-	MS53_0043	-	hypothetical protein
43	 24.82	0	46340..46903	-	187	71894068	-	MS53_0044	-	hypothetical protein
44	 25.41	0	46938..47429	-	163	71894069	-	MS53_0045	-	hypothetical protein
45	 20.34	-1	47473..47880	-	135	71894070	-	MS53_0046	-	hypothetical protein
46	 35.53	+1	48403..50493	-	696	71894071	fusA	MS53_0047	-	elongation factor G
47	 32.06	0	50500..50970	-	156	71894072	rpsG	MS53_0048	-	30S ribosomal protein S7
48	 36.71	+1	51004..51417	-	137	71894073	rpsL	MS53_0049	-	30S ribosomal protein S12
49	 26.32	0	51527..52225	-	232	71894074	-	MS53_0050	-	hypothetical protein
50	 19.93	-1	52218..53135	-	305	71894075	-	MS53_0051	-	DNA polymerase III subunit delta'
51	 27.60	0	53139..53783	-	214	71894076	tmk	MS53_0052	-	thymidylate kinase
52	 24.96	0	53791..54375	-	194	71894077	recR	MS53_0053	-	recombination protein RecR
53	 27.65	0	54375..54638	-	87	71894078	-	MS53_0054	-	hypothetical protein
54	 27.70	0	54672..56501	-	609	71894079	dnaX	MS53_0055	-	DNA polymerase III subunits gamma and tau
55	 27.73	0	56556..57680	-	374	71894080	-	MS53_0056	-	hypothetical protein
56	 26.83	0	57927..60509	+	860	71894081	parC	MS53_0057	-	DNA topoisomerase IV subunit A
57	 31.64	0	60516..62522	+	668	71894082	uvrB	MS53_0058	-	excinuclease ABC subunit B
58	 21.37	-1	62537..62887	+	116	71894083	-	MS53_0059	-	hypothetical protein
59	 26.50	0	62897..63877	+	326	71894084	lplA	MS53_0060	-	lipoate-protein ligase A
60	 23.28	-1	63880..64695	+	271	71894085	-	MS53_0061	-	hypothetical protein
61	 23.68	-1	64801..65028	-	75	71894086	-	MS53_0062	-	putative acyl carrier protein
62	 25.78	0	65050..65433	-	127	71894087	-	MS53_0063	-	hypothetical protein
63	 22.81	-1	65447..66529	-	360	71894088	-	MS53_0064	-	hypothetical protein
64	 24.75	0	66570..66977	-	135	71894089	-	MS53_0065	-	hypothetical protein
65	 32.81	0	67218..67409	+	63	71894090	rpmB	MS53_0066	-	50S ribosomal protein L28
66	 27.49	0	67451..68134	-	227	71894091	-	MS53_0067	-	hypothetical protein
67	 30.09	0	68221..68436	+	71	71894092	-	MS53_0068	-	hypothetical protein
68	 32.72	0	68593..70704	-	703	71894093	-	MS53_0069	-	hypothetical protein
69	 33.57	+1	70746..72842	-	698	71894094	-	MS53_0070	-	hypothetical protein
70	 28.46	0	72933..73199	-	88	71894095	rpsT	MS53_0071	-	30S ribosomal protein S20
71	 27.47	0	73627..74121	+	164	71894096	-	MS53_0072	-	hypothetical protein
72	 17.71	-2	74145..75392	+	415	71894097	-	MS53_0073	-	hypothetical protein
73	 20.79	-1	75404..76336	+	310	71894098	-	MS53_0074	-	hypothetical protein
74	 20.32	-1	76359..77603	+	414	71894099	-	MS53_0075	-	hypothetical protein
75	 31.95	0	77706..78140	+	144	71894100	rplM	MS53_0076	-	50S ribosomal protein L13
76	 34.60	+1	78140..78535	+	131	161611237	rpsI	MS53_0077	-	30S ribosomal protein S9
77	 25.24	0	78714..80060	+	448	71894102	aldA	MS53_0078	-	aldehyde dehydrogenase
78	 25.40	0	80201..81889	+	562	71894103	-	MS53_0079	-	putative transposase
79	 30.30	0	82300..83916	+	538	71894104	-	MS53_0080	-	putative ABC transporter ATP-binding protein
80	 23.60	-1	83916..84593	+	225	71894105	-	MS53_0081	-	hypothetical protein
81	 26.49	0	84874..85209	-	111	71894106	rbfA	MS53_0082	-	ribosome-binding factor A
82	 30.56	0	85209..86396	-	395	71894107	deoB	MS53_0083	-	phosphopentomutase
83	 16.20	-2	86419..87924	+	501	71894108	-	MS53_0084	-	hypothetical protein
84	 21.36	-1	88197..89867	-	556	71894109	-	MS53_0085	-	putative transport system permease protein p69
85	 21.55	-1	89864..90610	-	248	71894110	-	MS53_0086	-	putative ABC transporter atp-binding protein
86	 25.35	0	90624..91838	-	404	71894111	-	MS53_0087	-	putative P37-like ABC transporter substrate-binding lipoprotein
87	 30.33	0	92036..92635	+	199	71894112	acpD	MS53_0088	-	acyl carrier protein phosphodiesterase
88	 29.32	0	92678..93151	-	157	71894113	-	MS53_0089	-	hypothetical protein
89	 25.86	0	93145..94254	-	369	71894114	-	MS53_0090	-	hypothetical protein
90	 27.85	0	94247..95668	-	473	71894115	gatB	MS53_0091	-	aspartyl/glutamyl-tRNA amidotransferase subunit B
91	 31.29	0	95661..96980	-	439	71894116	gatA	MS53_0092	-	amidase
92	 24.09	-1	96980..97282	-	100	71894117	gatC	MS53_0093	-	Asp-tRNAAsn/Glu-tRNAGln amidotransferase C subunit
93	 23.52	-1	97289..98134	-	281	71894118	rluC	MS53_0094	-	ribosomal large subunit pseudouridine synthase C
94	 30.70	0	98134..98703	-	189	161611236	scpB	MS53_0095	-	segregation and condensation protein B
95	 26.08	0	98693..99436	-	247	71894120	scpA	MS53_0096	-	segregation and condensation protein A
96	 26.96	0	99426..100163	-	245	71894121	plsC	MS53_0097	-	1-acyl-sn-glycerol-3-phosphate acyltransferase
97	 21.18	-1	100187..100474	-	95	71894122	acpS	MS53_0098	-	holo-acyl-carrier protein synthase
98	 26.82	0	100492..100890	-	132	71894123	-	MS53_0099	-	hypothetical protein
99	 30.76	0	100880..102280	-	466	71894124	gltX	MS53_0100	-	glutamyl-tRNA synthetase
100	 28.94	0	102417..103736	+	439	71894125	-	MS53_0101	-	hypothetical protein
101	 29.72	0	103982..105697	-	571	71894126	-	MS53_0102	-	putative ABC transporter protein
102	 29.37	0	105728..106585	-	285	71894127	-	MS53_0103	-	putative ABC transporter, permease protein
103	 32.63	0	106585..107439	-	284	71894128	-	MS53_0104	-	putative multiple sugar ABC transporter permease
104	 33.66	+1	107442..108995	-	517	71894129	-	MS53_0105	-	putative ABC transporter protein, periplasmic component
105	 30.21	0	109153..109824	-	223	71894130	pgmB	MS53_0106	-	beta-phosphoglucomutase
106	 27.96	0	109820..112183	-	787	71894131	-	MS53_0107	-	hypothetical protein
107	 28.16	0	112201..113844	-	547	71894132	-	MS53_0108	-	putative oligo-alpha-glucosidase
108	 28.36	0	113945..114628	-	227	71894133	-	MS53_0109	-	hypothetical protein
109	 28.35	0	114625..115326	-	233	71894134	-	MS53_0110	-	putative DNase/RNase endonuclease
110	 23.73	-1	115323..116624	-	433	71894135	-	MS53_0111	-	putative tRNA (Uracil-5-) -methyltransferase
111	 26.89	0	116626..117168	-	180	71894136	-	MS53_0112	-	putative methyltransferase
112	 24.76	0	117161..117778	-	205	71894137	trmB	MS53_0113	-	tRNA (guanine-N(7))-methyltransferase
113	 33.59	+1	117804..118994	-	396	71894138	pgk	MS53_0114	-	phosphoglycerate kinase
114	 31.69	0	119274..119822	+	182	71894139	-	MS53_0115	-	hypothetical protein
115	 28.19	0	119827..120273	+	148	71894140	-	MS53_0116	-	hypothetical protein
116	 26.48	0	120270..121364	+	364	71894141	-	MS53_0117	-	hypothetical protein
117	 27.62	0	121423..122262	-	279	71894142	-	MS53_0118	-	hypothetical protein
118	 25.15	0	122274..122945	-	223	71894143	rpe	MS53_0119	-	ribulose-phosphate 3-epimerase
119	 25.03	0	122932..123762	-	276	161611235	-	MS53_0120	-	putative ATP/GTP-binding protein
120	 26.81	0	123762..124742	-	326	71894145	pknB	MS53_0121	-	serine/threonine-protein kinase
121	 28.11	0	124762..125508	-	248	71894146	prpC	MS53_0122	-	protein phosphatase
122	 29.48	0	125501..126097	-	198	71894147	gmk	MS53_0123	-	guanylate kinase
123	 26.80	0	126182..126334	-	50	71894148	rpmG	MS53_0124	-	50S ribosomal protein L33
124	 29.86	0	126367..127200	-	277	71894149	nfo	MS53_0125	-	endonuclease IV
125	 27.28	0	127188..128261	-	357	71894150	-	MS53_0126	-	putative potassium channel protein
28.74	MEAN

4.56	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.