IslandPathversion 1.0

IslandPath Analysis: Mycoplasma synoviae 53



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 28.74 STD DEV: 4.56
Mycoplasma synoviae 53, complete genome - 1..799476
672 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
558	 34.16	+1	678755..679117	-	120	71894583	rplQ	MS53_0573	-	50S ribosomal protein L17
559	 29.94	0	679129..680130	-	333	71894584	rpoA	MS53_0574	-	DNA-directed RNA polymerase subunit alpha
560	 35.38	+1	680150..680539	-	129	71894585	rpsK	MS53_0575	-	30S ribosomal protein S11
561	 32.52	0	680539..680907	-	122	71894586	rpsM	MS53_0576	-	30S ribosomal protein S13
562	 28.07	0	680911..681024	-	37	71894587	rpmJ	MS53_0577	-	50S ribosomal protein L36
563	 33.33	+1	681032..681247	-	71	71894588	infA	MS53_0578	-	translation initiation factor IF-1
564	 32.93	0	681248..681994	-	248	71894589	map	MS53_0579	-	methionine aminopeptidase
565	 33.33	+1	682056..682691	-	211	71894590	adk	MS53_0580	-	adenylate kinase
566	 28.87	0	682685..684118	-	477	71894591	secY	MS53_0581	-	preprotein translocase subunit SecY
567	 22.51	-1	684155..688099	+	1314	71894592	-	MS53_0582	-	hypothetical protein
568	 20.31	-1	688252..689142	+	296	71894593	-	MS53_0583	-	hypothetical protein
569	 23.47	-1	689159..689452	+	97	71894594	-	MS53_0584	-	hypothetical protein
570	 15.03	-2	689455..690219	+	254	71894595	-	MS53_0585	-	hypothetical protein
571	 21.25	-1	691356..691628	+	90	71894596	-	MS53_0586	-	hypothetical protein
572	 25.48	0	691684..692358	-	224	71894597	-	MS53_0587	-	hypothetical protein
573	 23.78	-1	692504..692953	-	149	71894598	-	MS53_0588	-	putative transposase
574	 24.20	0	692941..693345	-	134	71894599	-	MS53_0589	-	hypothetical protein
575	 27.26	0	693623..695350	+	575	71894600	-	MS53_0590	-	hypothetical protein
576	 27.88	0	695461..696726	-	421	71894601	serS	MS53_0591	-	seryl-tRNA synthetase
577	 30.22	0	696728..698653	-	641	71894602	parE	MS53_0592	-	topoisomerase IV subunit B
578	 31.37	0	698700..699818	-	372	71894603	dnaJ	MS53_0593	-	heat shock protein DnaJ
579	 27.65	0	700124..701038	-	304	71894604	-	MS53_0594	-	hypothetical protein
580	 30.04	0	701068..701979	-	303	71894605	rluD	MS53_0595	-	ribosomal large subunit pseudouridine synthase D
581	 33.65	+1	702001..702933	-	310	71894606	trxB	MS53_0596	-	thioredoxin reductase
582	 29.62	0	702933..703874	-	313	71894607	lgt	MS53_0597	-	prolipoprotein diacylglyceryl transferase
583	 29.35	0	703981..705111	-	376	71894608	-	MS53_0598	-	hypothetical protein
584	 30.26	0	705150..707039	-	629	71894609	-	MS53_0599	-	putative inner membrane protein translocase component YidC
585	 24.48	0	707092..707430	-	112	71894610	rnpA	MS53_0600	-	ribonuclease P protein component
586	 30.61	0	707444..707590	-	48	71894611	rpmH	MS53_0601	-	50S ribosomal protein L34
587	 31.71	0	707806..710271	-	821	71894612	-	MS53_0602	-	hypothetical protein
588	 27.35	0	710400..711803	+	467	71894613	-	MS53_0603	-	putative trigger factor
589	 29.27	0	712112..712357	-	81	71894614	-	MS53_0604	-	hypothetical protein
590	 33.98	+1	712366..713448	-	360	71894615	-	MS53_0605	-	putative endoglucanase
591	 27.36	0	713682..714284	+	200	71894616	infC	MS53_0606	-	translation initiation factor IF-3
592	 28.57	0	714284..714472	+	62	161611232	rpmI	MS53_0607	-	50S ribosomal protein L35
593	 31.91	0	714492..714842	+	116	71894618	rplT	MS53_0608	-	50S ribosomal protein L20
594	 21.84	-1	714892..715935	-	347	71894619	-	MS53_0609	-	hypothetical protein
595	 32.55	0	715932..717080	-	382	71894620	metK	MS53_0610	-	S-adenosylmethionine synthetase
596	 29.35	0	717204..718685	-	493	71894621	lysS	MS53_0611	-	lysyl-tRNA synthetase
597	 30.18	0	718681..719568	-	295	71894622	-	MS53_0612	-	putative ABC transporter ATP-binding protein
598	 27.95	0	719832..727748	-	2638	71894623	-	MS53_0613	-	putative ABC transporter permease protein
599	 32.44	0	727803..729812	-	669	71894624	ftsH	MS53_0614	-	cell division protein FtsH
600	 20.44	-1	729935..730795	-	286	71894625	-	MS53_0615	-	hypothetical protein
601	 29.08	0	730800..731363	-	187	71894626	pth	MS53_0616	-	peptidyl-tRNA hydrolase
602	 25.96	0	731363..733585	-	740	71894627	recD	MS53_0617	-	exodeoxyribonuclease V, alpha subunit
603	 29.73	0	733694..734608	+	304	71894628	-	MS53_0618	-	hypothetical protein
604	 28.29	0	734647..735360	+	237	71894629	rnhB	MS53_0619	-	ribonuclease HII
605	 26.97	0	735350..736261	-	303	71894630	-	MS53_0620	-	hypothetical protein
606	 26.33	0	736327..736926	+	199	71894631	-	MS53_0621	-	hypothetical protein
607	 29.94	0	736919..738154	+	411	71894632	tyrS	MS53_0622	-	tyrosyl tRNA synthetase
608	 34.63	+1	738257..738952	-	231	71894633	rplA	MS53_0623	-	50S ribosomal protein L1
609	 35.05	+1	738952..739533	-	193	71894634	rplK	MS53_0624	-	50S ribosomal protein L11
610	 34.23	+1	739591..740034	-	147	71894635	rplO	MS53_0625	-	50S ribosomal protein L15
611	 35.31	+1	740040..740495	-	151	71894636	rpsE	MS53_0626	-	30S ribosomal protein S5
612	 32.47	0	740789..741136	-	115	71894637	rplR	MS53_0627	-	50S ribosomal protein L18
613	 36.28	+1	741151..741693	-	180	71894638	rplF	MS53_0628	-	50S ribosomal protein L6
614	 32.06	0	741702..742094	-	130	71894639	rpsH	MS53_0629	-	30S ribosomal protein S8
615	 34.95	+1	742102..742287	-	61	71894640	rpsN	MS53_0630	-	30S ribosomal protein S14
616	 32.09	0	742287..742850	-	187	71894641	rplE	MS53_0631	-	50S ribosomal protein L5
617	 31.19	0	742847..743173	-	108	71894642	rplX	MS53_0632	-	50S ribosomal protein L24
618	 36.89	+1	743182..743547	-	121	71894643	rplN	MS53_0633	-	50S ribosomal protein L14
619	 32.30	0	743547..743837	-	96	71894644	rpsQ	MS53_0634	-	30S ribosomal protein S17
620	 31.31	0	743834..744031	-	65	71894645	rpmC	MS53_0635	-	50S ribosomal protein L29
621	 37.38	+1	744031..744450	-	139	71894646	rplP	MS53_0636	-	50S ribosomal protein L16
622	 32.89	0	744428..745108	-	226	71894647	rpsC	MS53_0637	-	30S ribosomal protein S3
623	 31.58	0	745108..745449	-	113	71894648	rplV	MS53_0638	-	50S ribosomal protein L22
624	 37.28	+1	745449..745727	-	92	71894649	rpsS	MS53_0639	-	30S ribosomal protein S19
625	 35.70	+1	745727..746572	-	281	71894650	rplB	MS53_0640	-	50S ribosomal protein L2
626	 32.91	0	746634..747110	-	158	71894651	rplW	MS53_0641	-	50S ribosomal protein L23
627	 33.17	0	747112..747717	-	201	71894652	rplD	MS53_0642	-	50S ribosomal protein L4
628	 35.44	+1	747804..748610	-	268	71894653	rplC	MS53_0643	-	50S ribosomal protein L3
629	 33.68	+1	748628..748918	-	96	71894654	rpsJ	MS53_0644	-	30S ribosomal protein S10
630	 30.99	0	749163..749504	-	113	71894655	trxA	MS53_0645	-	putative thioredoxin
631	 28.89	0	749520..751229	-	569	71894656	-	MS53_0646	-	hypothetical protein
632	 29.21	0	751226..752899	-	557	71894657	-	MS53_0647	-	hypothetical protein
633	 31.18	0	752899..754335	-	478	71894658	pyk	MS53_0648	-	pyruvate kinase
634	 28.84	0	754405..755628	-	407	71894659	-	MS53_0649	-	hypothetical protein
635	 25.35	0	755630..756193	-	187	71894660	-	MS53_0650	-	GTPase EngB
636	 24.54	0	756186..756617	-	143	71894661	-	MS53_0651	-	putative pantetheine-phosphate adenylyltransferase
637	 30.41	0	756619..757815	-	398	71894662	ackA	MS53_0652	-	acetate kinase
638	 33.75	+1	757812..758771	-	319	71894663	eutD	MS53_0653	-	phosphotransacetylase
639	 32.42	0	758891..759874	+	327	71894664	gpsA	MS53_0654	-	glycerol-3-phosphate dehydrogenase
640	 32.35	0	759905..760210	-	101	71894665	trxM	MS53_0655	-	thioredoxin
641	 32.61	0	760374..761885	+	503	71894666	pgm	MS53_0656	-	phosphoglyceromutase
642	 26.73	0	761909..762832	+	307	71894667	-	MS53_0657	-	putative ABC transporter ATP-binding protein
643	 28.43	0	762829..763908	+	359	71894668	-	MS53_0658	-	putative ABC transporter
644	 29.71	0	764033..764833	+	266	71894669	-	MS53_0659	-	cobalt transporter ATP-binding subunit
645	 32.16	0	764824..765759	+	311	71894670	-	MS53_0660	-	cobalt transporter ATP-binding subunit
646	 27.66	0	765752..766633	+	293	71894671	-	MS53_0661	-	putative ABC transporter permease protein
647	 32.76	0	766671..768407	-	578	71894672	-	MS53_0662	-	hypothetical protein
648	 30.33	0	768572..769669	-	365	71894673	ychF	MS53_0663	-	translation-associated GTPase
649	 23.58	-1	769725..770585	+	286	71894674	rbgA	MS53_0664	-	ribosomal biogenesis GTPase
650	 18.97	-2	770582..771361	-	259	71894675	-	MS53_0665	-	hypothetical protein
651	 28.02	0	771379..772188	+	269	71894676	-	MS53_0666	-	hypothetical protein
652	 39.24	+2	772379..773563	+	394	71894677	tufA	MS53_0667	-	elongation factor Tu
653	 17.23	-2	773645..773911	+	88	71894678	-	MS53_0668	-	hypothetical protein
654	 24.61	0	774203..774523	+	106	71894679	-	MS53_0669	-	hypothetical protein
655	 22.12	-1	774560..774871	+	103	71894680	-	MS53_0670	-	hypothetical protein
656	 24.38	0	779848..780528	-	226	71894681	-	MS53_0671	-	hypothetical protein
657	 26.03	0	780672..780986	+	104	71894682	-	MS53_0672	-	hypothetical protein
28.74	MEAN

4.56	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.