IslandPathversion 1.0

IslandPath Analysis: Mycoplasma synoviae 53



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 28.74 STD DEV: 4.56
Mycoplasma synoviae 53, complete genome - 1..799476
672 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
528	 28.47	0	638706..640595	+	629	71894553	-	MS53_0542	-	hypothetical protein
529	 21.66	-1	640626..642347	-	573	71894554	-	MS53_0543	-	hypothetical protein
530	 28.47	0	642344..644524	-	726	71894555	pcrA	MS53_0544	-	ATP-dependent helicase
531	 21.71	-1	644561..645214	-	217	71894556	-	MS53_0545	-	hypothetical protein
532	 23.78	-1	645211..646278	-	355	71894557	-	MS53_0546	-	hypothetical protein
533	 27.11	0	646303..647475	-	390	71894558	-	MS53_0547	-	hypothetical protein
534	 26.18	0	647944..650040	-	698	71894559	-	MS53_0548	-	hypothetical protein
535	 25.37	0	650328..651068	+	246	71894560	smf	MS53_0549	-	putative DNA processing protein
536	 39.61	+2	651101..651355	-	84	71894561	rpmA	MS53_0550	-	50S ribosomal protein L27
537	 32.01	0	651360..651662	-	100	161611233	rplU	MS53_0551	-	50S ribosomal protein L21
538	 34.47	+1	651889..652152	+	87	71894563	-	MS53_0552	-	hypothetical protein
539	 28.27	0	652197..653222	-	341	71894564	-	MS53_0553	-	putative ABC transporter permease protein
540	 30.24	0	653913..654365	-	150	71894565	-	MS53_0554	-	hypothetical protein
541	 33.52	+1	654589..655665	-	358	71894566	-	MS53_0555	-	hypothetical protein
542	 35.23	+1	655893..656156	-	87	71894567	-	MS53_0556	-	hypothetical protein
543	 28.61	0	656390..657109	-	239	71894568	-	MS53_0557	-	putative lipoprotein signal peptidase
544	 29.76	0	657102..659789	-	895	71894569	ileS	MS53_0558	-	isoleucyl-tRNA synthetase
545	 26.46	0	660686..661747	-	353	71894570	-	MS53_0559	-	hypothetical protein
546	 31.72	0	666804..667610	-	268	71894571	-	MS53_0560	-	hypothetical protein
547	 33.43	+1	667630..668619	-	329	71894572	recA	MS53_0561	-	recombinase A
548	 26.22	0	668712..668978	-	88	71894573	rpsO	MS53_0562	-	30S ribosomal protein S15
549	 24.73	0	669067..669903	-	278	71894574	ribF	MS53_0563	-	hypothetical protein
550	 29.81	0	669903..670697	-	264	71894575	-	MS53_0564	-	hypothetical protein
551	 24.31	0	670699..671562	-	287	71894576	truB	MS53_0565	-	tRNA pseudouridine synthase B
552	 27.15	0	671562..672095	-	177	71894577	-	MS53_0566	-	hypothetical protein
553	 24.50	0	672135..674228	+	697	71894578	lig	MS53_0567	-	DNA ligase
554	 28.31	0	674221..674757	+	178	71894579	-	MS53_0568	-	putative tRNA/rRNA methyltransferase
555	 26.05	0	674747..675460	+	237	71894580	-	MS53_0569	-	putative tRNA/rRNA methyltransferase
556	 26.51	0	675453..675701	+	82	71894581	-	MS53_0570	-	hypothetical protein
557	 31.70	0	675886..678642	-	918	71894582	mgtA	MS53_0572	-	cation-transporting P-type ATPase
558	 34.16	+1	678755..679117	-	120	71894583	rplQ	MS53_0573	-	50S ribosomal protein L17
559	 29.94	0	679129..680130	-	333	71894584	rpoA	MS53_0574	-	DNA-directed RNA polymerase subunit alpha
560	 35.38	+1	680150..680539	-	129	71894585	rpsK	MS53_0575	-	30S ribosomal protein S11
561	 32.52	0	680539..680907	-	122	71894586	rpsM	MS53_0576	-	30S ribosomal protein S13
562	 28.07	0	680911..681024	-	37	71894587	rpmJ	MS53_0577	-	50S ribosomal protein L36
563	 33.33	+1	681032..681247	-	71	71894588	infA	MS53_0578	-	translation initiation factor IF-1
564	 32.93	0	681248..681994	-	248	71894589	map	MS53_0579	-	methionine aminopeptidase
565	 33.33	+1	682056..682691	-	211	71894590	adk	MS53_0580	-	adenylate kinase
566	 28.87	0	682685..684118	-	477	71894591	secY	MS53_0581	-	preprotein translocase subunit SecY
567	 22.51	-1	684155..688099	+	1314	71894592	-	MS53_0582	-	hypothetical protein
568	 20.31	-1	688252..689142	+	296	71894593	-	MS53_0583	-	hypothetical protein
569	 23.47	-1	689159..689452	+	97	71894594	-	MS53_0584	-	hypothetical protein
570	 15.03	-2	689455..690219	+	254	71894595	-	MS53_0585	-	hypothetical protein
571	 21.25	-1	691356..691628	+	90	71894596	-	MS53_0586	-	hypothetical protein
572	 25.48	0	691684..692358	-	224	71894597	-	MS53_0587	-	hypothetical protein
573	 23.78	-1	692504..692953	-	149	71894598	-	MS53_0588	-	putative transposase
574	 24.20	0	692941..693345	-	134	71894599	-	MS53_0589	-	hypothetical protein
575	 27.26	0	693623..695350	+	575	71894600	-	MS53_0590	-	hypothetical protein
576	 27.88	0	695461..696726	-	421	71894601	serS	MS53_0591	-	seryl-tRNA synthetase
577	 30.22	0	696728..698653	-	641	71894602	parE	MS53_0592	-	topoisomerase IV subunit B
578	 31.37	0	698700..699818	-	372	71894603	dnaJ	MS53_0593	-	heat shock protein DnaJ
579	 27.65	0	700124..701038	-	304	71894604	-	MS53_0594	-	hypothetical protein
580	 30.04	0	701068..701979	-	303	71894605	rluD	MS53_0595	-	ribosomal large subunit pseudouridine synthase D
581	 33.65	+1	702001..702933	-	310	71894606	trxB	MS53_0596	-	thioredoxin reductase
582	 29.62	0	702933..703874	-	313	71894607	lgt	MS53_0597	-	prolipoprotein diacylglyceryl transferase
583	 29.35	0	703981..705111	-	376	71894608	-	MS53_0598	-	hypothetical protein
584	 30.26	0	705150..707039	-	629	71894609	-	MS53_0599	-	putative inner membrane protein translocase component YidC
585	 24.48	0	707092..707430	-	112	71894610	rnpA	MS53_0600	-	ribonuclease P protein component
586	 30.61	0	707444..707590	-	48	71894611	rpmH	MS53_0601	-	50S ribosomal protein L34
587	 31.71	0	707806..710271	-	821	71894612	-	MS53_0602	-	hypothetical protein
588	 27.35	0	710400..711803	+	467	71894613	-	MS53_0603	-	putative trigger factor
589	 29.27	0	712112..712357	-	81	71894614	-	MS53_0604	-	hypothetical protein
590	 33.98	+1	712366..713448	-	360	71894615	-	MS53_0605	-	putative endoglucanase
591	 27.36	0	713682..714284	+	200	71894616	infC	MS53_0606	-	translation initiation factor IF-3
592	 28.57	0	714284..714472	+	62	161611232	rpmI	MS53_0607	-	50S ribosomal protein L35
593	 31.91	0	714492..714842	+	116	71894618	rplT	MS53_0608	-	50S ribosomal protein L20
594	 21.84	-1	714892..715935	-	347	71894619	-	MS53_0609	-	hypothetical protein
595	 32.55	0	715932..717080	-	382	71894620	metK	MS53_0610	-	S-adenosylmethionine synthetase
596	 29.35	0	717204..718685	-	493	71894621	lysS	MS53_0611	-	lysyl-tRNA synthetase
597	 30.18	0	718681..719568	-	295	71894622	-	MS53_0612	-	putative ABC transporter ATP-binding protein
598	 27.95	0	719832..727748	-	2638	71894623	-	MS53_0613	-	putative ABC transporter permease protein
599	 32.44	0	727803..729812	-	669	71894624	ftsH	MS53_0614	-	cell division protein FtsH
600	 20.44	-1	729935..730795	-	286	71894625	-	MS53_0615	-	hypothetical protein
601	 29.08	0	730800..731363	-	187	71894626	pth	MS53_0616	-	peptidyl-tRNA hydrolase
602	 25.96	0	731363..733585	-	740	71894627	recD	MS53_0617	-	exodeoxyribonuclease V, alpha subunit
603	 29.73	0	733694..734608	+	304	71894628	-	MS53_0618	-	hypothetical protein
604	 28.29	0	734647..735360	+	237	71894629	rnhB	MS53_0619	-	ribonuclease HII
605	 26.97	0	735350..736261	-	303	71894630	-	MS53_0620	-	hypothetical protein
606	 26.33	0	736327..736926	+	199	71894631	-	MS53_0621	-	hypothetical protein
607	 29.94	0	736919..738154	+	411	71894632	tyrS	MS53_0622	-	tyrosyl tRNA synthetase
608	 34.63	+1	738257..738952	-	231	71894633	rplA	MS53_0623	-	50S ribosomal protein L1
609	 35.05	+1	738952..739533	-	193	71894634	rplK	MS53_0624	-	50S ribosomal protein L11
610	 34.23	+1	739591..740034	-	147	71894635	rplO	MS53_0625	-	50S ribosomal protein L15
611	 35.31	+1	740040..740495	-	151	71894636	rpsE	MS53_0626	-	30S ribosomal protein S5
612	 32.47	0	740789..741136	-	115	71894637	rplR	MS53_0627	-	50S ribosomal protein L18
613	 36.28	+1	741151..741693	-	180	71894638	rplF	MS53_0628	-	50S ribosomal protein L6
614	 32.06	0	741702..742094	-	130	71894639	rpsH	MS53_0629	-	30S ribosomal protein S8
615	 34.95	+1	742102..742287	-	61	71894640	rpsN	MS53_0630	-	30S ribosomal protein S14
616	 32.09	0	742287..742850	-	187	71894641	rplE	MS53_0631	-	50S ribosomal protein L5
617	 31.19	0	742847..743173	-	108	71894642	rplX	MS53_0632	-	50S ribosomal protein L24
618	 36.89	+1	743182..743547	-	121	71894643	rplN	MS53_0633	-	50S ribosomal protein L14
619	 32.30	0	743547..743837	-	96	71894644	rpsQ	MS53_0634	-	30S ribosomal protein S17
620	 31.31	0	743834..744031	-	65	71894645	rpmC	MS53_0635	-	50S ribosomal protein L29
621	 37.38	+1	744031..744450	-	139	71894646	rplP	MS53_0636	-	50S ribosomal protein L16
622	 32.89	0	744428..745108	-	226	71894647	rpsC	MS53_0637	-	30S ribosomal protein S3
623	 31.58	0	745108..745449	-	113	71894648	rplV	MS53_0638	-	50S ribosomal protein L22
624	 37.28	+1	745449..745727	-	92	71894649	rpsS	MS53_0639	-	30S ribosomal protein S19
625	 35.70	+1	745727..746572	-	281	71894650	rplB	MS53_0640	-	50S ribosomal protein L2
626	 32.91	0	746634..747110	-	158	71894651	rplW	MS53_0641	-	50S ribosomal protein L23
627	 33.17	0	747112..747717	-	201	71894652	rplD	MS53_0642	-	50S ribosomal protein L4
28.74	MEAN

4.56	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.