IslandPath Analysis: Mycoplasma synoviae 53



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 28.74   STD DEV: 4.56
Mycoplasma synoviae 53, complete genome - 1..799476
672 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
501	 28.31	0	607384..609213	+	609	71894526	gidA	MS53_0515	-	tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
502	 21.84	-1	609203..609637	+	144	71894527	-	MS53_0516	-	hypothetical protein
503	 31.70	0	609800..612121	+	773	71894528	-	MS53_0517	-	putative lipoprotein
504	 33.33	+1	612175..612861	-	228	71894529	ktrA	MS53_0518	-	putative potassium uptake protein KtrA
505	 29.87	0	612873..614516	-	547	71894530	ktrB	MS53_0519	-	putative potassium uptake protein KtrB
506	 22.65	-1	614560..615420	-	286	71894531	-	MS53_0520	-	hypothetical protein
507	 33.15	0	615477..616028	+	183	71894532	tdk	MS53_0521	-	thymidine kinase
508	 34.73	+1	616126..617487	+	453	71894533	nox	MS53_0522	-	NADH oxidase
509	 32.22	0	617573..619279	+	568	71894534	ptsI	MS53_0523	-	phosphoenolpyruvate-protein phosphatase
510	 27.90	0	619271..620098	-	275	71894535	fmt	MS53_0524	-	methionyl-tRNA formyltransferase
511	 22.07	-1	620101..620997	-	298	71894536	-	MS53_0525	-	hypothetical protein
512	 21.09	-1	621067..622095	-	342	71894537	-	MS53_0526	-	hypothetical protein
513	 22.73	-1	622193..622654	-	153	71894538	-	MS53_0527	-	hypothetical protein
514	 24.32	0	622687..623562	-	291	71894539	-	MS53_0528	-	putative DNA polymerase I
515	 24.15	-1	623559..626531	-	990	71894540	dnaE	MS53_0529	-	DNA polymerase III DnaE
516	 23.55	-1	626547..627977	-	476	71894541	-	MS53_0530	-	hypothetical protein
517	 29.61	0	628009..629886	-	625	71894542	topA	MS53_0531	-	DNA topoisomerase I
518	 28.86	0	630098..630589	+	163	71894543	rpsF	MS53_0532	-	30S ribosomal protein S6
519	 27.16	0	630600..631166	+	188	71894544	ssb	MS53_0533	-	single stranded binding protein
520	 32.44	0	631166..631501	+	111	71894545	rpsR	MS53_0534	-	30S ribosomal protein S18
521	 28.79	0	631598..632434	+	278	71894546	-	MS53_0535	-	putative citrate lyase beta chain
522	 33.52	+1	632435..632971	+	178	71894547	-	MS53_0536	-	putative transcription regulatory protein
523	 30.46	0	632983..634305	+	440	71894548	-	MS53_0537	-	putative coenzyme A transferase
524	 34.07	+1	634314..634853	+	179	71894549	-	MS53_0538	-	hypothetical protein
525	 33.48	+1	634863..635528	+	221	71894550	-	MS53_0539	-	hypothetical protein
526	 21.86	-1	636207..637034	+	275	71894551	-	MS53_0540	-	hypothetical protein
527	 23.04	-1	637315..638490	+	391	71894552	-	MS53_0541	-	hypothetical protein
528	 28.47	0	638706..640595	+	629	71894553	-	MS53_0542	-	hypothetical protein
529	 21.66	-1	640626..642347	-	573	71894554	-	MS53_0543	-	hypothetical protein
530	 28.47	0	642344..644524	-	726	71894555	pcrA	MS53_0544	-	ATP-dependent helicase
531	 21.71	-1	644561..645214	-	217	71894556	-	MS53_0545	-	hypothetical protein
532	 23.78	-1	645211..646278	-	355	71894557	-	MS53_0546	-	hypothetical protein
533	 27.11	0	646303..647475	-	390	71894558	-	MS53_0547	-	hypothetical protein
534	 26.18	0	647944..650040	-	698	71894559	-	MS53_0548	-	hypothetical protein
535	 25.37	0	650328..651068	+	246	71894560	smf	MS53_0549	-	putative DNA processing protein
536	 39.61	+2	651101..651355	-	84	71894561	rpmA	MS53_0550	-	50S ribosomal protein L27
537	 32.01	0	651360..651662	-	100	161611233	rplU	MS53_0551	-	50S ribosomal protein L21
538	 34.47	+1	651889..652152	+	87	71894563	-	MS53_0552	-	hypothetical protein
539	 28.27	0	652197..653222	-	341	71894564	-	MS53_0553	-	putative ABC transporter permease protein
540	 30.24	0	653913..654365	-	150	71894565	-	MS53_0554	-	hypothetical protein
541	 33.52	+1	654589..655665	-	358	71894566	-	MS53_0555	-	hypothetical protein
542	 35.23	+1	655893..656156	-	87	71894567	-	MS53_0556	-	hypothetical protein
543	 28.61	0	656390..657109	-	239	71894568	-	MS53_0557	-	putative lipoprotein signal peptidase
544	 29.76	0	657102..659789	-	895	71894569	ileS	MS53_0558	-	isoleucyl-tRNA synthetase
545	 26.46	0	660686..661747	-	353	71894570	-	MS53_0559	-	hypothetical protein
546	 31.72	0	666804..667610	-	268	71894571	-	MS53_0560	-	hypothetical protein
547	 33.43	+1	667630..668619	-	329	71894572	recA	MS53_0561	-	recombinase A
548	 26.22	0	668712..668978	-	88	71894573	rpsO	MS53_0562	-	30S ribosomal protein S15
549	 24.73	0	669067..669903	-	278	71894574	ribF	MS53_0563	-	hypothetical protein
550	 29.81	0	669903..670697	-	264	71894575	-	MS53_0564	-	hypothetical protein
551	 24.31	0	670699..671562	-	287	71894576	truB	MS53_0565	-	tRNA pseudouridine synthase B
552	 27.15	0	671562..672095	-	177	71894577	-	MS53_0566	-	hypothetical protein
553	 24.50	0	672135..674228	+	697	71894578	lig	MS53_0567	-	DNA ligase
554	 28.31	0	674221..674757	+	178	71894579	-	MS53_0568	-	putative tRNA/rRNA methyltransferase
555	 26.05	0	674747..675460	+	237	71894580	-	MS53_0569	-	putative tRNA/rRNA methyltransferase
556	 26.51	0	675453..675701	+	82	71894581	-	MS53_0570	-	hypothetical protein
557	 31.70	0	675886..678642	-	918	71894582	mgtA	MS53_0572	-	cation-transporting P-type ATPase
558	 34.16	+1	678755..679117	-	120	71894583	rplQ	MS53_0573	-	50S ribosomal protein L17
559	 29.94	0	679129..680130	-	333	71894584	rpoA	MS53_0574	-	DNA-directed RNA polymerase subunit alpha
560	 35.38	+1	680150..680539	-	129	71894585	rpsK	MS53_0575	-	30S ribosomal protein S11
561	 32.52	0	680539..680907	-	122	71894586	rpsM	MS53_0576	-	30S ribosomal protein S13
562	 28.07	0	680911..681024	-	37	71894587	rpmJ	MS53_0577	-	50S ribosomal protein L36
563	 33.33	+1	681032..681247	-	71	71894588	infA	MS53_0578	-	translation initiation factor IF-1
564	 32.93	0	681248..681994	-	248	71894589	map	MS53_0579	-	methionine aminopeptidase
565	 33.33	+1	682056..682691	-	211	71894590	adk	MS53_0580	-	adenylate kinase
566	 28.87	0	682685..684118	-	477	71894591	secY	MS53_0581	-	preprotein translocase subunit SecY
567	 22.51	-1	684155..688099	+	1314	71894592	-	MS53_0582	-	hypothetical protein
568	 20.31	-1	688252..689142	+	296	71894593	-	MS53_0583	-	hypothetical protein
569	 23.47	-1	689159..689452	+	97	71894594	-	MS53_0584	-	hypothetical protein
570	 15.03	-2	689455..690219	+	254	71894595	-	MS53_0585	-	hypothetical protein
571	 21.25	-1	691356..691628	+	90	71894596	-	MS53_0586	-	hypothetical protein
572	 25.48	0	691684..692358	-	224	71894597	-	MS53_0587	-	hypothetical protein
573	 23.78	-1	692504..692953	-	149	71894598	-	MS53_0588	-	putative transposase
574	 24.20	0	692941..693345	-	134	71894599	-	MS53_0589	-	hypothetical protein
575	 27.26	0	693623..695350	+	575	71894600	-	MS53_0590	-	hypothetical protein
576	 27.88	0	695461..696726	-	421	71894601	serS	MS53_0591	-	seryl-tRNA synthetase
577	 30.22	0	696728..698653	-	641	71894602	parE	MS53_0592	-	topoisomerase IV subunit B
578	 31.37	0	698700..699818	-	372	71894603	dnaJ	MS53_0593	-	heat shock protein DnaJ
579	 27.65	0	700124..701038	-	304	71894604	-	MS53_0594	-	hypothetical protein
580	 30.04	0	701068..701979	-	303	71894605	rluD	MS53_0595	-	ribosomal large subunit pseudouridine synthase D
581	 33.65	+1	702001..702933	-	310	71894606	trxB	MS53_0596	-	thioredoxin reductase
582	 29.62	0	702933..703874	-	313	71894607	lgt	MS53_0597	-	prolipoprotein diacylglyceryl transferase
583	 29.35	0	703981..705111	-	376	71894608	-	MS53_0598	-	hypothetical protein
584	 30.26	0	705150..707039	-	629	71894609	-	MS53_0599	-	putative inner membrane protein translocase component YidC
585	 24.48	0	707092..707430	-	112	71894610	rnpA	MS53_0600	-	ribonuclease P protein component
586	 30.61	0	707444..707590	-	48	71894611	rpmH	MS53_0601	-	50S ribosomal protein L34
587	 31.71	0	707806..710271	-	821	71894612	-	MS53_0602	-	hypothetical protein
588	 27.35	0	710400..711803	+	467	71894613	-	MS53_0603	-	putative trigger factor
589	 29.27	0	712112..712357	-	81	71894614	-	MS53_0604	-	hypothetical protein
590	 33.98	+1	712366..713448	-	360	71894615	-	MS53_0605	-	putative endoglucanase
591	 27.36	0	713682..714284	+	200	71894616	infC	MS53_0606	-	translation initiation factor IF-3
592	 28.57	0	714284..714472	+	62	161611232	rpmI	MS53_0607	-	50S ribosomal protein L35
593	 31.91	0	714492..714842	+	116	71894618	rplT	MS53_0608	-	50S ribosomal protein L20
594	 21.84	-1	714892..715935	-	347	71894619	-	MS53_0609	-	hypothetical protein
595	 32.55	0	715932..717080	-	382	71894620	metK	MS53_0610	-	S-adenosylmethionine synthetase
596	 29.35	0	717204..718685	-	493	71894621	lysS	MS53_0611	-	lysyl-tRNA synthetase
597	 30.18	0	718681..719568	-	295	71894622	-	MS53_0612	-	putative ABC transporter ATP-binding protein
598	 27.95	0	719832..727748	-	2638	71894623	-	MS53_0613	-	putative ABC transporter permease protein
599	 32.44	0	727803..729812	-	669	71894624	ftsH	MS53_0614	-	cell division protein FtsH
600	 20.44	-1	729935..730795	-	286	71894625	-	MS53_0615	-	hypothetical protein
28.74	MEAN

4.56	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.