IslandPath Analysis: Mycoplasma synoviae 53



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 28.74   STD DEV: 4.56
Mycoplasma synoviae 53, complete genome - 1..799476
672 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
437	 22.92	-1	509890..510417	+	175	71894462	-	MS53_0449	-	hypothetical protein
438	 23.59	-1	510803..512065	-	420	71894463	-	MS53_0450	-	hypothetical protein
439	 22.12	-1	512067..512396	-	109	71894464	-	MS53_0451	-	hypothetical protein
440	 28.83	0	512519..513874	+	451	71894465	glyS	MS53_0452	-	glycyl-tRNA synthetase
441	 24.97	0	513881..515722	+	613	71894466	dnaG	MS53_0453	-	DNA primase
442	 31.58	0	515845..516471	-	208	71894467	-	MS53_0454	-	hypothetical protein
443	 30.28	0	516646..518118	+	490	71894468	rpoD	MS53_0455	-	RNA polymerase sigma factor
444	 29.30	0	518123..518890	+	255	71894469	-	MS53_0456	-	hypothetical protein
445	 26.42	0	518942..519187	+	81	71894470	-	MS53_0457	-	hypothetical protein
446	 29.47	0	519347..523228	+	1293	71894471	-	MS53_0458	-	hypothetical protein
447	 27.15	0	523242..531098	+	2618	71894472	-	MS53_0459	-	hypothetical protein
448	 27.88	0	532144..533115	+	323	71894473	ldh	MS53_0461	-	L-lactate dehydrogenase
449	 27.79	0	533199..535343	-	714	71894474	-	MS53_0462	-	hypothetical protein
450	 28.99	0	535351..537675	-	774	71894475	-	MS53_0463	-	hypothetical protein
451	 26.93	0	537912..539270	-	452	71894476	atpD-3	MS53_0464	-	F0F1 ATP synthase subunit beta
452	 23.37	-1	539270..540814	-	514	71894477	atpA-3	MS53_0465	-	F0F1 ATP synthase subunit alpha
453	 23.10	-1	540804..542807	-	667	71894478	-	MS53_0466	-	hypothetical protein
454	 18.30	-2	542798..543256	-	152	71894479	-	MS53_0467	-	hypothetical protein
455	 19.44	-2	543256..544140	-	294	71894480	-	MS53_0468	-	hypothetical protein
456	 19.02	-2	544133..544621	-	162	71894481	-	MS53_0469	-	hypothetical protein
457	 17.15	-2	544632..546083	-	483	71894482	-	MS53_0470	-	hypothetical protein
458	 29.22	0	546076..548241	-	721	71894483	-	MS53_0471	-	hypothetical protein
459	 29.70	0	548270..548737	-	155	71894484	-	MS53_0472	-	hypothetical protein
460	 28.52	0	548758..549360	-	200	71894485	-	MS53_0473	-	hypothetical protein
461	 21.79	-1	549756..554504	-	1582	71894486	-	MS53_0474	-	hypothetical protein
462	 25.47	0	554852..556237	-	461	71894487	-	MS53_0475	-	putative transposase,ISMHp1-like
463	 25.43	0	556249..556539	-	96	71894488	-	MS53_0476	-	hypothetical protein
464	 30.56	0	556683..556898	-	71	71894489	rpmE	MS53_0477	-	50S ribosomal protein L31
465	 31.33	0	556906..557505	-	199	71894490	rpsD	MS53_0478	-	30S ribosomal protein S4
466	 29.51	0	557712..558443	+	243	71894491	-	MS53_0479	-	hypothetical protein
467	 25.00	0	558424..558855	+	143	71894492	smpB	MS53_0480	-	SsrA-binding protein
468	 29.91	0	559295..560782	-	495	71894493	-	MS53_0481	-	hypothetical protein
469	 28.38	0	560832..562304	-	490	71894494	-	MS53_0482	-	putative amino acid permease
470	 31.86	0	562313..563605	-	430	71894495	pgiB	MS53_0483	-	glucose-6-phosphate isomerase
471	 32.15	0	563681..568159	-	1492	71894496	rpoC	MS53_0484	-	DNA-directed RNA polymerase subunit beta'
472	 32.59	0	568152..571763	-	1203	71894497	rpoB	MS53_0485	-	DNA-directed RNA polymerase subunit beta
473	 31.83	0	571937..572668	-	243	71894498	tpiA	MS53_0486	-	triosephosphate isomerase
474	 27.20	0	572774..573262	+	162	71894499	recU	MS53_0487	-	Holliday junction-specific endonuclease
475	 31.52	0	573263..573538	-	91	71894500	himA	MS53_0488	-	nucleoid DNA-binding protein
476	 31.13	0	573675..575492	+	605	71894501	lepA	MS53_0489	-	GTP-binding protein LepA
477	 23.88	-1	575493..575894	-	133	71894502	-	MS53_0490	-	hypothetical protein
478	 24.06	-1	575957..577573	+	538	71894503	-	MS53_0491	-	hypothetical protein
479	 29.95	0	577600..579048	-	482	71894504	proS	MS53_0492	-	prolyl-tRNA synthetase
480	 22.77	-1	579712..580014	+	100	71894505	-	MS53_0493	-	hypothetical protein
481	 29.88	0	580011..580763	-	250	71894506	pgsA	MS53_0494	-	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase
482	 24.77	0	580768..581316	-	182	71894507	-	MS53_0495	-	hypothetical protein
483	 31.32	0	581324..581671	-	115	71894508	-	MS53_0496	-	hypothetical protein
484	 31.29	0	581701..583122	-	473	71894509	mgtE	MS53_0497	-	Mg2+ transport protein
485	 26.03	0	583133..583789	-	218	71894510	-	MS53_0498	-	hypothetical protein
486	 27.78	0	583791..584132	-	113	71894511	-	MS53_0499	-	hypothetical protein
487	 29.79	0	584228..586120	+	630	71894512	pepO	MS53_0500	-	endopeptidase O
488	 27.31	0	586202..587230	+	342	71894513	-	MS53_0501	-	hypothetical protein
489	 20.37	-1	587295..589646	+	783	71894514	-	MS53_0502	-	hypothetical protein
490	 27.88	0	589822..590646	+	274	71894515	-	MS53_0503	-	hypothetical protein
491	 18.00	-2	590736..592163	+	475	71894516	-	MS53_0504	-	hypothetical protein
492	 24.32	0	592154..593296	+	380	71894517	thiI	MS53_0505	-	thiamine biosynthesis protein
493	 24.89	0	593305..595092	-	595	71894518	-	MS53_0506	-	putative ABC transporter, ATP-binding protein
494	 24.61	0	595170..596957	-	595	71894519	-	MS53_0507	-	putative ABC transporter, ATP-binding protein
495	 27.98	0	597228..598628	+	466	71894520	potA	MS53_0508	-	spermidine/putrescine ABC transporter ATP-binding protein
496	 27.78	0	598669..599460	+	263	71894521	potB	MS53_0509	-	spermidine/putrescine ABC transporter permease protein PotB
497	 28.59	0	599498..600298	+	266	71894522	potC	MS53_0510	-	spermidine/putrescine transport system permease PotC
498	 28.48	0	600295..602253	+	652	71894523	-	MS53_0511	-	hypothetical protein
499	 25.59	0	603752..605443	+	563	71894524	-	MS53_0513	-	putative ABC transporter, ATP-binding protein
500	 25.37	0	605436..607382	+	648	71894525	-	MS53_0514	-	putative ABC transporter, ATP-binding protein
501	 28.31	0	607384..609213	+	609	71894526	gidA	MS53_0515	-	tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
502	 21.84	-1	609203..609637	+	144	71894527	-	MS53_0516	-	hypothetical protein
503	 31.70	0	609800..612121	+	773	71894528	-	MS53_0517	-	putative lipoprotein
504	 33.33	+1	612175..612861	-	228	71894529	ktrA	MS53_0518	-	putative potassium uptake protein KtrA
505	 29.87	0	612873..614516	-	547	71894530	ktrB	MS53_0519	-	putative potassium uptake protein KtrB
506	 22.65	-1	614560..615420	-	286	71894531	-	MS53_0520	-	hypothetical protein
507	 33.15	0	615477..616028	+	183	71894532	tdk	MS53_0521	-	thymidine kinase
508	 34.73	+1	616126..617487	+	453	71894533	nox	MS53_0522	-	NADH oxidase
509	 32.22	0	617573..619279	+	568	71894534	ptsI	MS53_0523	-	phosphoenolpyruvate-protein phosphatase
510	 27.90	0	619271..620098	-	275	71894535	fmt	MS53_0524	-	methionyl-tRNA formyltransferase
511	 22.07	-1	620101..620997	-	298	71894536	-	MS53_0525	-	hypothetical protein
512	 21.09	-1	621067..622095	-	342	71894537	-	MS53_0526	-	hypothetical protein
513	 22.73	-1	622193..622654	-	153	71894538	-	MS53_0527	-	hypothetical protein
514	 24.32	0	622687..623562	-	291	71894539	-	MS53_0528	-	putative DNA polymerase I
515	 24.15	-1	623559..626531	-	990	71894540	dnaE	MS53_0529	-	DNA polymerase III DnaE
516	 23.55	-1	626547..627977	-	476	71894541	-	MS53_0530	-	hypothetical protein
517	 29.61	0	628009..629886	-	625	71894542	topA	MS53_0531	-	DNA topoisomerase I
518	 28.86	0	630098..630589	+	163	71894543	rpsF	MS53_0532	-	30S ribosomal protein S6
519	 27.16	0	630600..631166	+	188	71894544	ssb	MS53_0533	-	single stranded binding protein
520	 32.44	0	631166..631501	+	111	71894545	rpsR	MS53_0534	-	30S ribosomal protein S18
521	 28.79	0	631598..632434	+	278	71894546	-	MS53_0535	-	putative citrate lyase beta chain
522	 33.52	+1	632435..632971	+	178	71894547	-	MS53_0536	-	putative transcription regulatory protein
523	 30.46	0	632983..634305	+	440	71894548	-	MS53_0537	-	putative coenzyme A transferase
524	 34.07	+1	634314..634853	+	179	71894549	-	MS53_0538	-	hypothetical protein
525	 33.48	+1	634863..635528	+	221	71894550	-	MS53_0539	-	hypothetical protein
526	 21.86	-1	636207..637034	+	275	71894551	-	MS53_0540	-	hypothetical protein
527	 23.04	-1	637315..638490	+	391	71894552	-	MS53_0541	-	hypothetical protein
528	 28.47	0	638706..640595	+	629	71894553	-	MS53_0542	-	hypothetical protein
529	 21.66	-1	640626..642347	-	573	71894554	-	MS53_0543	-	hypothetical protein
530	 28.47	0	642344..644524	-	726	71894555	pcrA	MS53_0544	-	ATP-dependent helicase
531	 21.71	-1	644561..645214	-	217	71894556	-	MS53_0545	-	hypothetical protein
532	 23.78	-1	645211..646278	-	355	71894557	-	MS53_0546	-	hypothetical protein
533	 27.11	0	646303..647475	-	390	71894558	-	MS53_0547	-	hypothetical protein
534	 26.18	0	647944..650040	-	698	71894559	-	MS53_0548	-	hypothetical protein
535	 25.37	0	650328..651068	+	246	71894560	smf	MS53_0549	-	putative DNA processing protein
536	 39.61	+2	651101..651355	-	84	71894561	rpmA	MS53_0550	-	50S ribosomal protein L27
28.74	MEAN

4.56	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.