IslandPathversion 1.0

IslandPath Analysis: Mycoplasma synoviae 53



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 28.74 STD DEV: 4.56
Mycoplasma synoviae 53, complete genome - 1..799476
672 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
397	 35.03	+1	459059..460651	-	530	71894422	atpA	MS53_0407	-	F0F1 ATP synthase subunit alpha
398	 24.64	0	460641..461192	-	183	71894423	atpH	MS53_0408	-	ATP synthase delta chain
399	 30.20	0	461192..461734	-	180	71894424	atpF	MS53_0409	-	ATP synthase B chain
400	 38.99	+2	461773..462090	-	105	71894425	atpE	MS53_0410	-	ATP synthase C chain
401	 32.09	0	462127..462930	-	267	71894426	atpB	MS53_0411	-	F0F1 ATP synthase subunit A
402	 19.14	-2	462943..463428	-	161	71894427	-	MS53_0412	-	hypothetical protein
403	 30.26	0	463767..464579	+	270	71894428	rpsB	MS53_0413	-	30S ribosomal protein S2
404	 34.24	+1	464579..465457	+	292	71894429	tsf	MS53_0414	-	elongation factor EF-Ts
405	 21.86	-1	465483..467957	-	824	71894430	-	MS53_0415	-	hypothetical protein
406	 28.19	0	468017..468871	+	284	71894431	-	MS53_0416	-	hypothetical protein
407	 24.32	0	468884..469582	+	232	71894432	rsuA	MS53_0417	-	16S rRNA uridine-516 pseudouridylate synthase family protein
408	 20.73	-1	469579..472053	-	824	71894433	-	MS53_0418	-	hypothetical protein
409	 30.28	0	472146..472637	-	163	71894434	-	MS53_0419	-	hypothetical protein
410	 32.13	0	472785..473282	+	165	71894435	rplJ	MS53_0420	-	50S ribosomal protein L10
411	 37.10	+1	473319..473690	+	123	71894436	rplL	MS53_0421	-	50S ribosomal protein L7/L12
412	 33.18	0	473734..475077	-	447	71894437	asnC	MS53_0422	-	asparaginyl-tRNA synthetase
413	 31.94	0	475249..476967	+	572	71894438	-	MS53_0423	-	putative amino acid permease
414	 28.93	0	477456..478703	-	415	71894439	hlyC	MS53_0424	-	hemolysin C
415	 30.33	0	478730..480226	-	498	71894440	dnaB	MS53_0425	-	replicative DNA helicase
416	 30.94	0	480243..480701	-	152	71894441	rplI	MS53_0426	-	50S ribosomal protein L9
417	 29.37	0	480682..482724	-	680	71894442	-	MS53_0427	-	DHH subfamily 1 protein
418	 26.30	0	482736..484370	-	544	71894443	-	MS53_0428	-	hypothetical protein
419	 28.60	0	484404..485291	-	295	71894444	-	MS53_0429	-	hypothetical protein
420	 35.16	+1	485302..486342	-	346	71894445	-	MS53_0430	-	hypothetical protein
421	 30.30	0	487039..487599	-	186	71894446	efp	MS53_0431	-	elongation factor P
422	 24.95	0	487830..488330	+	166	71894447	-	MS53_0432	-	hypothetical protein
423	 27.52	0	488874..492023	-	1049	71894448	-	MS53_0433	-	putative ATP-binding protein
424	 25.75	0	492043..492411	-	122	71894449	-	MS53_0434	-	putative PTS system glucose-specific enzyme IIB component
425	 29.56	0	492551..493054	-	167	71894450	-	MS53_0435	-	hypothetical protein
426	 30.57	0	493082..494782	-	566	71894451	aspS	MS53_0436	-	aspartyl-tRNA synthetase
427	 31.26	0	494799..496295	-	498	71894452	hisS	MS53_0437	-	histidyl-tRNA synthetase
428	 23.38	-1	496276..497922	-	548	71894453	-	MS53_0438	-	hypothetical protein
429	 23.94	-1	499922..500794	+	290	71894454	-	MS53_0440	-	putative cytosine-specific methyltransferase
430	 17.55	-2	500820..503696	+	958	71894455	-	MS53_0441	-	hypothetical protein
431	 19.55	-2	503703..504101	+	132	71894456	-	MS53_0442	-	hypothetical protein
432	 20.88	-1	504359..504607	+	82	71894457	-	MS53_0443	-	hypothetical protein
433	 30.06	0	506274..506945	-	223	71894458	deoC	MS53_0445	-	deoxyribose-phosphate aldolase
434	 30.64	0	506945..508243	-	432	71894459	deoA	MS53_0446	-	pyrimidine-nucleoside phosphorylase
435	 30.62	0	508245..508943	-	232	71894460	deoD	MS53_0447	-	purine-nucleoside phosphorylase
436	 28.72	0	509040..509885	+	281	71894461	fpg	MS53_0448	-	foramidopyrimidine DNA gycosylase
437	 22.92	-1	509890..510417	+	175	71894462	-	MS53_0449	-	hypothetical protein
438	 23.59	-1	510803..512065	-	420	71894463	-	MS53_0450	-	hypothetical protein
439	 22.12	-1	512067..512396	-	109	71894464	-	MS53_0451	-	hypothetical protein
440	 28.83	0	512519..513874	+	451	71894465	glyS	MS53_0452	-	glycyl-tRNA synthetase
441	 24.97	0	513881..515722	+	613	71894466	dnaG	MS53_0453	-	DNA primase
442	 31.58	0	515845..516471	-	208	71894467	-	MS53_0454	-	hypothetical protein
443	 30.28	0	516646..518118	+	490	71894468	rpoD	MS53_0455	-	RNA polymerase sigma factor
444	 29.30	0	518123..518890	+	255	71894469	-	MS53_0456	-	hypothetical protein
445	 26.42	0	518942..519187	+	81	71894470	-	MS53_0457	-	hypothetical protein
446	 29.47	0	519347..523228	+	1293	71894471	-	MS53_0458	-	hypothetical protein
447	 27.15	0	523242..531098	+	2618	71894472	-	MS53_0459	-	hypothetical protein
448	 27.88	0	532144..533115	+	323	71894473	ldh	MS53_0461	-	L-lactate dehydrogenase
449	 27.79	0	533199..535343	-	714	71894474	-	MS53_0462	-	hypothetical protein
450	 28.99	0	535351..537675	-	774	71894475	-	MS53_0463	-	hypothetical protein
451	 26.93	0	537912..539270	-	452	71894476	atpD-3	MS53_0464	-	F0F1 ATP synthase subunit beta
452	 23.37	-1	539270..540814	-	514	71894477	atpA-3	MS53_0465	-	F0F1 ATP synthase subunit alpha
453	 23.10	-1	540804..542807	-	667	71894478	-	MS53_0466	-	hypothetical protein
454	 18.30	-2	542798..543256	-	152	71894479	-	MS53_0467	-	hypothetical protein
455	 19.44	-2	543256..544140	-	294	71894480	-	MS53_0468	-	hypothetical protein
456	 19.02	-2	544133..544621	-	162	71894481	-	MS53_0469	-	hypothetical protein
457	 17.15	-2	544632..546083	-	483	71894482	-	MS53_0470	-	hypothetical protein
458	 29.22	0	546076..548241	-	721	71894483	-	MS53_0471	-	hypothetical protein
459	 29.70	0	548270..548737	-	155	71894484	-	MS53_0472	-	hypothetical protein
460	 28.52	0	548758..549360	-	200	71894485	-	MS53_0473	-	hypothetical protein
461	 21.79	-1	549756..554504	-	1582	71894486	-	MS53_0474	-	hypothetical protein
462	 25.47	0	554852..556237	-	461	71894487	-	MS53_0475	-	putative transposase,ISMHp1-like
463	 25.43	0	556249..556539	-	96	71894488	-	MS53_0476	-	hypothetical protein
464	 30.56	0	556683..556898	-	71	71894489	rpmE	MS53_0477	-	50S ribosomal protein L31
465	 31.33	0	556906..557505	-	199	71894490	rpsD	MS53_0478	-	30S ribosomal protein S4
466	 29.51	0	557712..558443	+	243	71894491	-	MS53_0479	-	hypothetical protein
467	 25.00	0	558424..558855	+	143	71894492	smpB	MS53_0480	-	SsrA-binding protein
468	 29.91	0	559295..560782	-	495	71894493	-	MS53_0481	-	hypothetical protein
469	 28.38	0	560832..562304	-	490	71894494	-	MS53_0482	-	putative amino acid permease
470	 31.86	0	562313..563605	-	430	71894495	pgiB	MS53_0483	-	glucose-6-phosphate isomerase
471	 32.15	0	563681..568159	-	1492	71894496	rpoC	MS53_0484	-	DNA-directed RNA polymerase subunit beta'
472	 32.59	0	568152..571763	-	1203	71894497	rpoB	MS53_0485	-	DNA-directed RNA polymerase subunit beta
473	 31.83	0	571937..572668	-	243	71894498	tpiA	MS53_0486	-	triosephosphate isomerase
474	 27.20	0	572774..573262	+	162	71894499	recU	MS53_0487	-	Holliday junction-specific endonuclease
475	 31.52	0	573263..573538	-	91	71894500	himA	MS53_0488	-	nucleoid DNA-binding protein
476	 31.13	0	573675..575492	+	605	71894501	lepA	MS53_0489	-	GTP-binding protein LepA
477	 23.88	-1	575493..575894	-	133	71894502	-	MS53_0490	-	hypothetical protein
478	 24.06	-1	575957..577573	+	538	71894503	-	MS53_0491	-	hypothetical protein
479	 29.95	0	577600..579048	-	482	71894504	proS	MS53_0492	-	prolyl-tRNA synthetase
480	 22.77	-1	579712..580014	+	100	71894505	-	MS53_0493	-	hypothetical protein
481	 29.88	0	580011..580763	-	250	71894506	pgsA	MS53_0494	-	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase
482	 24.77	0	580768..581316	-	182	71894507	-	MS53_0495	-	hypothetical protein
483	 31.32	0	581324..581671	-	115	71894508	-	MS53_0496	-	hypothetical protein
484	 31.29	0	581701..583122	-	473	71894509	mgtE	MS53_0497	-	Mg2+ transport protein
485	 26.03	0	583133..583789	-	218	71894510	-	MS53_0498	-	hypothetical protein
486	 27.78	0	583791..584132	-	113	71894511	-	MS53_0499	-	hypothetical protein
487	 29.79	0	584228..586120	+	630	71894512	pepO	MS53_0500	-	endopeptidase O
488	 27.31	0	586202..587230	+	342	71894513	-	MS53_0501	-	hypothetical protein
489	 20.37	-1	587295..589646	+	783	71894514	-	MS53_0502	-	hypothetical protein
490	 27.88	0	589822..590646	+	274	71894515	-	MS53_0503	-	hypothetical protein
491	 18.00	-2	590736..592163	+	475	71894516	-	MS53_0504	-	hypothetical protein
492	 24.32	0	592154..593296	+	380	71894517	thiI	MS53_0505	-	thiamine biosynthesis protein
493	 24.89	0	593305..595092	-	595	71894518	-	MS53_0506	-	putative ABC transporter, ATP-binding protein
494	 24.61	0	595170..596957	-	595	71894519	-	MS53_0507	-	putative ABC transporter, ATP-binding protein
495	 27.98	0	597228..598628	+	466	71894520	potA	MS53_0508	-	spermidine/putrescine ABC transporter ATP-binding protein
496	 27.78	0	598669..599460	+	263	71894521	potB	MS53_0509	-	spermidine/putrescine ABC transporter permease protein PotB
28.74	MEAN

4.56	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.