IslandPathversion 1.0

IslandPath Analysis: Mycoplasma synoviae 53



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 28.74 STD DEV: 4.56
Mycoplasma synoviae 53, complete genome - 1..799476
672 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
296	 32.46	0	338587..339852	-	421	71894321	glyA	MS53_0305	-	serine hydroxymethyltransferase
297	 25.79	0	339855..342014	-	719	71894322	pheT	MS53_0306	-	putative phenylalanyl-tRNA synthetase beta chain
298	 26.81	0	342019..342693	-	224	71894323	ung	MS53_0307	-	uracil-DNA glycosylase
299	 28.56	0	342697..343638	-	313	71894324	pheS	MS53_0308	-	phenylalanyl-tRNA synthetase subunit alpha
300	 29.63	0	343796..344416	+	206	71894325	upp	MS53_0309	-	uracil phosphoribosyltransferase
301	 21.87	-1	344437..345186	+	249	71894326	-	MS53_0310	-	hypothetical protein
302	 25.54	0	345195..347492	+	765	71894327	leuS	MS53_0311	-	leucyl-tRNA synthetase
303	 28.84	0	347532..350204	+	890	71894328	lon	MS53_0312	-	heat shock ATP-dependent protease
304	 21.45	-1	350644..351417	+	257	71894329	-	MS53_0313	-	hypothetical protein
305	 20.36	-1	351429..351821	+	130	71894330	-	MS53_0314	-	hypothetical protein
306	 22.61	-1	351963..352307	+	114	71894331	-	MS53_0315	-	hypothetical protein
307	 27.86	0	352722..354914	+	730	71894332	-	MS53_0316	-	hypothetical protein
308	 31.76	0	354970..357567	-	865	71894333	gyrA	MS53_0317	-	DNA gyrase subunit A
309	 28.02	0	357677..358372	-	231	71894334	rluB	MS53_0318	-	ribosomal large subunit pseudouridine synthase B
310	 28.08	0	358384..359469	-	361	71894335	nadD	MS53_0319	-	putative nicotinate-nucleotide adenylyltransferase
311	 24.96	0	359471..360640	-	389	71894336	dinP	MS53_0320	-	DNA polymerase IV
312	 25.56	0	360699..361097	-	132	71894337	nifU	MS53_0321	-	nitrogen fixation protein NifU
313	 26.74	0	361114..362280	-	388	71894338	nifS	MS53_0322	-	nitrogen fixation protein NifS
314	 21.44	-1	362281..362751	-	156	71894339	-	MS53_0323	-	hypothetical protein
315	 25.48	0	362753..363223	-	156	71894340	-	MS53_0324	-	hypothetical protein
316	 27.44	0	363232..364674	-	480	71894341	-	MS53_0325	-	hypothetical protein
317	 28.40	0	364757..365608	+	283	71894342	-	MS53_0326	-	hypothetical protein
318	 26.53	0	367338..371939	-	1533	71894343	-	MS53_0328	-	hypothetical protein
319	 34.56	+1	372359..374722	+	787	71894344	-	MS53_0329	-	hypothetical protein
320	 30.85	0	374750..376840	+	696	71894345	-	MS53_0330	-	putative ABC transporter ATP-binding protein
321	 30.08	0	376893..377876	+	327	71894346	ugpA	MS53_0331	-	ABC transporter, permease protein
322	 33.33	+1	377866..378840	+	324	71894347	ugpE	MS53_0332	-	ABC transporter permease protein
323	 27.98	0	379118..380668	+	516	71894348	-	MS53_0333	-	hypothetical protein
324	 33.55	+1	380685..383000	+	771	71894349	-	MS53_0334	-	hypothetical protein
325	 24.87	0	383078..383833	+	251	71894350	-	MS53_0335	-	hypothetical protein
326	 29.51	0	383833..384801	+	322	71894351	-	MS53_0336	-	putative MgpA like-protein
327	 30.62	0	384797..385753	+	318	71894352	-	MS53_0337	-	putative MgpA like-protein
328	 27.89	0	385844..386725	+	293	71894353	-	MS53_0338	-	asparagine synthetase AsnA
329	 28.94	0	386733..387461	+	242	71894354	-	MS53_0339	-	putative PTS system, lichenan-specific IIA component
330	 35.05	+1	387570..389198	-	542	71894355	ftsZ	MS53_0340	-	cell division protein
331	 22.56	-1	389347..390516	-	389	71894356	-	MS53_0341	-	hypothetical protein
332	 28.37	0	390519..391424	-	301	71894357	yabC	MS53_0342	-	S-adenosyl-methyltransferase
333	 32.66	0	391414..391857	-	147	71894358	-	MS53_0343	-	hypothetical protein
334	 25.06	0	391984..392430	-	148	71894359	-	MS53_0344	-	hypothetical protein
335	 26.73	0	392438..394828	-	796	71894360	oppF-1	MS53_0345	-	oligopeptide ABC transporter ATP-binding protein
336	 32.33	0	394883..395881	-	332	71894361	oppD-1	MS53_0346	-	oligopeptide ABC transporter, ATP-binding protein
337	 30.73	0	395878..397221	-	447	71894362	oppC-1	MS53_0347	-	oligopeptide transport system permease protein
338	 29.16	0	397233..398357	-	374	71894363	oppB-1	MS53_0348	-	oligopeptide ABC transporter permease protein
339	 29.91	0	398366..401341	-	991	71894364	-	MS53_0349	-	putative lipoprotein
340	 27.07	0	401376..403211	-	611	71894365	pepF	MS53_0350	-	oligoendopeptidase F
341	 34.90	+1	403390..405180	-	596	71894366	dnaK	MS53_0351	-	molecular chaperone DnaK
342	 27.08	0	405282..406160	-	292	71894367	grpE	MS53_0352	-	heat shock protein GrpE
343	 27.66	0	406153..407175	-	340	71894368	hrcA	MS53_0353	-	heat-inducible transcription repressor
344	 34.72	+1	407254..408120	-	288	71894369	fba	MS53_0354	-	fructose-bisphosphate aldolase
345	 30.30	0	408128..408391	-	87	71894370	-	MS53_0355	-	hypothetical protein
346	 27.29	0	408424..410079	-	551	71894371	argS	MS53_0356	-	arginyl-tRNA synthetase
347	 26.04	0	410177..411397	+	406	71894372	cysS	MS53_0357	-	cysteinyl-tRNA synthetase
348	 28.35	0	411418..412119	+	233	71894373	-	MS53_0358	-	putative tRNA/rRNA methyltransferase
349	 22.96	-1	412112..412699	+	195	71894374	-	MS53_0359	-	hypothetical protein
350	 22.67	-1	412884..413108	+	74	71894375	secE	MS53_0360	-	preprotein translocase subunit SecE
351	 28.90	0	413110..413718	+	202	71894376	nusG	MS53_0361	-	transcription antitermination protein
352	 29.67	0	413750..415141	+	463	71894377	trmE	MS53_0362	-	tRNA modification GTPase TrmE
353	 26.52	0	415141..415947	+	268	71894378	-	MS53_0363	-	hypothetical protein
354	 24.36	0	415947..416726	+	259	71894379	ksgA	MS53_0364	-	dimethyladenosine transferase
355	 24.67	0	416710..417159	-	149	71894380	-	MS53_0365	-	hypothetical protein
356	 26.50	0	417164..417763	-	199	71894381	-	MS53_0366	-	hypothetical protein
357	 20.17	-1	417763..418233	-	156	71894382	-	MS53_0367	-	hypothetical protein
358	 31.30	0	418238..418729	-	163	71894383	tpx	MS53_0368	-	thiol peroxidase
359	 21.71	-1	418744..419070	-	108	71894384	-	MS53_0369	-	hypothetical protein
360	 23.83	-1	419271..420122	-	283	71894385	-	MS53_0370	-	hypothetical protein
361	 20.67	-1	420137..424393	+	1418	71894386	-	MS53_0371	-	hypothetical protein
362	 29.24	0	424577..425602	-	341	71894387	-	MS53_0372	-	hypothetical protein
363	 31.12	0	425612..426334	-	240	71894388	-	MS53_0373	-	hypothetical protein
364	 31.62	0	426596..428404	+	602	71894389	-	MS53_0374	-	hypothetical protein
365	 30.56	0	428485..429603	+	372	71894390	trmU	MS53_0375	-	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
366	 27.87	0	429612..432248	+	878	71894391	alaS	MS53_0376	-	alanyl-tRNA synthetase
367	 21.96	-1	432272..432649	+	125	71894392	-	MS53_0377	-	hypothetical protein
368	 23.36	-1	432657..433328	+	223	71894393	-	MS53_0378	-	hypothetical protein
369	 30.38	0	433383..433856	+	157	71894394	greA	MS53_0379	-	transcription elongation factor GreA
370	 26.07	0	433889..434563	+	224	71894395	-	MS53_0380	-	putative deoxyguanosine kinase
371	 28.12	0	434559..435095	+	178	71894396	hpt	MS53_0381	-	hypoxanthine-guanine phosphoribosyltransferases
372	 26.49	0	435201..435989	+	262	71894397	lip3	MS53_0382	-	triacylglycerol lipase
373	 21.63	-1	435982..437160	+	392	71894398	-	MS53_0383	-	putative glycerol transporter subunit A
374	 20.96	-1	437150..438103	+	317	71894399	-	MS53_0384	-	putative glycerol transporter subunit B
375	 20.86	-1	438084..438893	+	269	71894400	-	MS53_0385	-	putative glycerol transporter subunit C
376	 30.17	0	438904..440802	+	632	71894401	-	MS53_0386	-	putative lipoprotein
377	 27.70	0	440839..441690	-	283	71894402	era	MS53_0387	-	GTP-binding protein Era
378	 31.99	0	441707..442078	-	123	71894403	cdd	MS53_0388	-	cytidine deaminase
379	 21.04	-1	442110..442589	-	159	71894404	-	MS53_0389	-	hypothetical protein
380	 18.48	-2	442597..442926	-	109	71894405	-	MS53_0390	-	hypothetical protein
381	 19.79	-1	442958..444973	-	671	71894406	-	MS53_0391	-	putative ABC transporter ATP-binding
382	 34.46	+1	445061..445504	+	147	71894407	rpiB	MS53_0392	-	ribose-5-phosphate isomerase B
383	 25.35	0	445507..447021	+	504	71894408	cls	MS53_0393	-	cardiolipin synthetase
384	 30.30	0	447078..447341	+	87	71894409	ptsH	MS53_0394	-	phophocarrier protein HPr
385	 31.21	0	447345..448193	-	282	71894410	-	MS53_0395	-	hypothetical protein
386	 32.16	0	448228..448737	-	169	71894411	comEB	MS53_0396	-	deoxycytidylate deaminase fusion protein
387	 31.20	0	448734..449201	-	155	71894412	folA	MS53_0397	-	dihydrofolate reductase
388	 31.72	0	449201..450070	-	289	71894413	thyA	MS53_0398	-	thymidylate synthase
389	 33.73	+1	450378..451397	+	339	71894414	nrdF	MS53_0399	-	ribonucleotide-diphosphate reductase subunit beta
390	 33.10	0	451415..451846	+	143	71894415	nrdI	MS53_0400	-	ribonucleotide reductase stimulatory protein
391	 33.52	+1	451869..454043	+	724	71894416	nrdE	MS53_0401	-	ribonucleotide-diphosphate reductase subunit alpha
392	 34.40	+1	454141..455637	-	498	71894417	-	MS53_0402	-	hypothetical protein
393	 28.85	0	455722..456345	-	207	71894418	-	MS53_0403	-	hypothetical protein
394	 28.50	0	456382..456795	-	137	71894419	atpC	MS53_0404	-	putative ATP synthase epsilon subunit
395	 37.13	+1	456795..458189	-	464	71894420	atpD	MS53_0405	-	F0F1 ATP synthase subunit beta
28.74	MEAN

4.56	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.