IslandPathversion 1.0

IslandPath Analysis: Mycoplasma synoviae 53



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 28.74 STD DEV: 4.56
Mycoplasma synoviae 53, complete genome - 1..799476
672 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
239	 31.21	0	265608..266219	-	203	71894264	-	MS53_0242	-	putative phase-variable hemagglutinin
240	 33.04	0	266899..267573	-	224	71894265	-	MS53_0243	-	putative phase-variable hemagglutinin
241	 33.25	0	267625..268779	-	384	71894266	-	MS53_0244	-	putative phase-variable hemagglutinin
242	 32.77	0	269073..270146	-	357	71894267	-	MS53_0245	-	putative phase-variable hemagglutinin
243	 34.52	+1	270176..270679	-	167	71894268	-	MS53_0246	-	putative phase-variable hemagglutinin
244	 36.08	+1	270658..272115	-	485	71894269	-	MS53_0247	-	putative phase-variable hemagglutinin
245	 33.18	0	272142..272810	-	222	71894270	-	MS53_0248	-	putative phase-variable hemagglutinin
246	 36.00	+1	273122..275074	-	650	71894271	-	MS53_0249	-	putative phase-variable hemagglutinin
247	 31.49	0	275101..275589	-	162	71894272	-	MS53_0250	-	putative phase-variable hemagglutinin
248	 30.57	0	275640..276653	-	337	71894273	-	MS53_0251	-	putative phase-variable hemagglutinin
249	 33.42	+1	276683..277813	-	376	71894274	-	MS53_0252	-	putative phase-variable hemagglutinin
250	 35.12	+1	278137..279144	-	335	71894275	-	MS53_0253	-	putative phase-variable hemagglutinin
251	 31.98	0	279264..280298	-	344	71894276	-	MS53_0254	-	putative phase-variable hemagglutinin
252	 33.05	0	280328..281392	-	354	71894277	-	MS53_0255	-	putative phase-variable hemagglutinin
253	 35.06	+1	281422..282000	-	192	71894278	-	MS53_0256	-	putative phase-variable hemagglutinin
254	 37.56	+1	282000..283349	-	449	71894279	-	MS53_0257	-	putative phase-variable hemagglutinin
255	 32.54	0	283404..283907	-	167	71894280	-	MS53_0258	-	putative phase-variable hemagglutinin
256	 35.58	+1	283940..285007	-	355	71894281	-	MS53_0259	-	putative phase-variable hemagglutinin
257	 33.91	+1	285040..285561	-	173	71894282	-	MS53_0260	-	putative phase-variable hemagglutinin
258	 33.13	0	285637..286119	-	160	71894283	-	MS53_0261	-	putative phase-variable hemagglutinin
259	 35.70	+1	286431..288416	-	661	71894284	-	MS53_0262	-	putative phase-variable hemagglutinin
260	 30.98	0	288443..288994	-	183	71894285	-	MS53_0263	-	putative phase-variable hemagglutinin
261	 29.44	0	289494..290186	-	230	71894286	-	MS53_0264	-	putative phase-variable hemagglutinin
262	 31.51	0	290213..290596	-	127	71894287	-	MS53_0265	-	putative phase-variable hemagglutinin
263	 34.20	+1	290577..290807	-	76	71894288	-	MS53_0266	-	putative phase-variable hemagglutinin
264	 34.56	+1	290812..291219	-	135	71894289	-	MS53_0267	-	putative phase-variable hemagglutinin
265	 37.08	+1	292135..293844	+	569	71894290	vlhA	MS53_0268	-	phase-variable hemagglutinin
266	 34.31	+1	293844..294455	+	203	71894291	-	MS53_0269	-	putative phase-variable hemagglutinin
267	 34.43	+1	294593..295597	+	334	71894292	gapA	MS53_0270	-	glyceraldehyde 3-phosphate dehydrogenase
268	 23.21	-1	295849..297597	+	582	71894293	uvrC	MS53_0271	-	excinuclease ABC subunit C
269	 35.38	+1	297651..298775	+	374	71894294	pdhA	MS53_0272	-	pyruvate dehydrogenase E1 component, alpha subunit
270	 39.46	+2	298772..299767	+	331	71894295	pdhB	MS53_0273	-	pyruvate dehydrogenase E1 component, beta subunit
271	 36.16	+1	299788..300672	+	294	71894296	pdhC	MS53_0274	-	dihydrolipoamide acetyltransferase
272	 38.15	+2	300674..302542	+	622	71894297	pdhD	MS53_0275	-	dihydrolipoamide dehydrogenase
273	 18.23	-2	304268..304651	+	127	71894298	-	MS53_0277	-	hypothetical protein
274	 26.02	0	305657..306586	+	309	71894299	-	MS53_0279	-	putative MGPA-like protein
275	 22.85	-1	309020..309763	+	247	71894300	licA	MS53_0282	-	PTS system, lichenan-specific IIA component
276	 24.79	0	310107..311768	+	553	71894301	-	MS53_0283	-	putative transposase,undefined
277	 26.71	0	311934..313292	-	452	71894302	-	MS53_0284	-	hypothetical protein
278	 28.76	0	313361..315700	-	779	71894303	-	MS53_0285	-	hypothetical protein
279	 20.41	-1	316115..316501	+	128	71894304	-	MS53_0286	-	hypothetical protein
280	 27.41	0	316527..316982	+	151	71894305	-	MS53_0287	-	hypothetical protein
281	 27.41	0	319033..319353	+	106	71894306	-	MS53_0288	-	hypothetical protein
282	 15.53	-2	320837..321055	+	72	71894307	-	MS53_0290	-	hypothetical protein
283	 22.22	-1	321056..321433	+	125	71894308	-	MS53_0291	-	hypothetical protein
284	 27.00	0	321706..321942	+	78	71894309	-	MS53_0292	-	hypothetical protein
285	 18.63	-2	321946..323577	+	543	71894310	-	MS53_0293	-	hypothetical protein
286	 20.15	-1	323612..325492	+	626	71894311	-	MS53_0294	-	hypothetical protein
287	 32.21	0	327690..328670	-	326	71894312	pfk	MS53_0296	-	6-phosphofructokinase
288	 33.21	0	328667..329503	-	278	71894313	folD	MS53_0297	-	methylenetetrahydrofolate dehydrogenase / methenyltetrahydrofolate cyclohydrolase
289	 27.93	0	329491..331989	-	832	71894314	valS	MS53_0298	-	valyl-tRNA synthetase
290	 37.02	+1	332304..333197	+	297	71894315	-	MS53_0299	-	putative endoglucanase
291	 32.62	0	333221..333640	+	139	71894316	-	MS53_0300	-	putative neutrophil activating protein NapA
292	 27.54	0	333727..335937	+	736	71894317	vacB	MS53_0301	-	VACB-like ribonuclease II
293	 27.67	0	335927..336703	+	258	71894318	-	MS53_0302	-	putative DNA methylase
294	 26.01	0	336705..338261	+	518	71894319	metG	MS53_0303	-	methionyl-tRNA synthetase
295	 24.42	0	338257..338559	+	100	71894320	-	MS53_0304	-	hypothetical protein
296	 32.46	0	338587..339852	-	421	71894321	glyA	MS53_0305	-	serine hydroxymethyltransferase
297	 25.79	0	339855..342014	-	719	71894322	pheT	MS53_0306	-	putative phenylalanyl-tRNA synthetase beta chain
298	 26.81	0	342019..342693	-	224	71894323	ung	MS53_0307	-	uracil-DNA glycosylase
299	 28.56	0	342697..343638	-	313	71894324	pheS	MS53_0308	-	phenylalanyl-tRNA synthetase subunit alpha
300	 29.63	0	343796..344416	+	206	71894325	upp	MS53_0309	-	uracil phosphoribosyltransferase
301	 21.87	-1	344437..345186	+	249	71894326	-	MS53_0310	-	hypothetical protein
302	 25.54	0	345195..347492	+	765	71894327	leuS	MS53_0311	-	leucyl-tRNA synthetase
303	 28.84	0	347532..350204	+	890	71894328	lon	MS53_0312	-	heat shock ATP-dependent protease
304	 21.45	-1	350644..351417	+	257	71894329	-	MS53_0313	-	hypothetical protein
305	 20.36	-1	351429..351821	+	130	71894330	-	MS53_0314	-	hypothetical protein
306	 22.61	-1	351963..352307	+	114	71894331	-	MS53_0315	-	hypothetical protein
307	 27.86	0	352722..354914	+	730	71894332	-	MS53_0316	-	hypothetical protein
308	 31.76	0	354970..357567	-	865	71894333	gyrA	MS53_0317	-	DNA gyrase subunit A
309	 28.02	0	357677..358372	-	231	71894334	rluB	MS53_0318	-	ribosomal large subunit pseudouridine synthase B
310	 28.08	0	358384..359469	-	361	71894335	nadD	MS53_0319	-	putative nicotinate-nucleotide adenylyltransferase
311	 24.96	0	359471..360640	-	389	71894336	dinP	MS53_0320	-	DNA polymerase IV
312	 25.56	0	360699..361097	-	132	71894337	nifU	MS53_0321	-	nitrogen fixation protein NifU
313	 26.74	0	361114..362280	-	388	71894338	nifS	MS53_0322	-	nitrogen fixation protein NifS
314	 21.44	-1	362281..362751	-	156	71894339	-	MS53_0323	-	hypothetical protein
315	 25.48	0	362753..363223	-	156	71894340	-	MS53_0324	-	hypothetical protein
316	 27.44	0	363232..364674	-	480	71894341	-	MS53_0325	-	hypothetical protein
317	 28.40	0	364757..365608	+	283	71894342	-	MS53_0326	-	hypothetical protein
318	 26.53	0	367338..371939	-	1533	71894343	-	MS53_0328	-	hypothetical protein
319	 34.56	+1	372359..374722	+	787	71894344	-	MS53_0329	-	hypothetical protein
320	 30.85	0	374750..376840	+	696	71894345	-	MS53_0330	-	putative ABC transporter ATP-binding protein
321	 30.08	0	376893..377876	+	327	71894346	ugpA	MS53_0331	-	ABC transporter, permease protein
322	 33.33	+1	377866..378840	+	324	71894347	ugpE	MS53_0332	-	ABC transporter permease protein
323	 27.98	0	379118..380668	+	516	71894348	-	MS53_0333	-	hypothetical protein
324	 33.55	+1	380685..383000	+	771	71894349	-	MS53_0334	-	hypothetical protein
325	 24.87	0	383078..383833	+	251	71894350	-	MS53_0335	-	hypothetical protein
326	 29.51	0	383833..384801	+	322	71894351	-	MS53_0336	-	putative MgpA like-protein
327	 30.62	0	384797..385753	+	318	71894352	-	MS53_0337	-	putative MgpA like-protein
328	 27.89	0	385844..386725	+	293	71894353	-	MS53_0338	-	asparagine synthetase AsnA
329	 28.94	0	386733..387461	+	242	71894354	-	MS53_0339	-	putative PTS system, lichenan-specific IIA component
330	 35.05	+1	387570..389198	-	542	71894355	ftsZ	MS53_0340	-	cell division protein
331	 22.56	-1	389347..390516	-	389	71894356	-	MS53_0341	-	hypothetical protein
332	 28.37	0	390519..391424	-	301	71894357	yabC	MS53_0342	-	S-adenosyl-methyltransferase
333	 32.66	0	391414..391857	-	147	71894358	-	MS53_0343	-	hypothetical protein
334	 25.06	0	391984..392430	-	148	71894359	-	MS53_0344	-	hypothetical protein
335	 26.73	0	392438..394828	-	796	71894360	oppF-1	MS53_0345	-	oligopeptide ABC transporter ATP-binding protein
336	 32.33	0	394883..395881	-	332	71894361	oppD-1	MS53_0346	-	oligopeptide ABC transporter, ATP-binding protein
337	 30.73	0	395878..397221	-	447	71894362	oppC-1	MS53_0347	-	oligopeptide transport system permease protein
338	 29.16	0	397233..398357	-	374	71894363	oppB-1	MS53_0348	-	oligopeptide ABC transporter permease protein
28.74	MEAN

4.56	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.