IslandPath Analysis: Mycoplasma synoviae 53



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 28.74   STD DEV: 4.56
Mycoplasma synoviae 53, complete genome - 1..799476
672 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
191	 27.05	0	217168..218250	+	360	71894216	nagA	MS53_0194	-	N-acetylglucosamine 6-P deacetylase
192	 31.12	0	218237..219094	-	285	71894217	nagC	MS53_0195	-	N-acetylmannosamine kinase
193	 27.41	0	219162..219617	+	151	71894218	-	MS53_0196	-	hypothetical protein
194	 33.62	+1	219617..220312	+	231	71894219	-	MS53_0197	-	N-acetylmannosamine-6-phosphate 2-epimerase
195	 32.99	0	220332..221195	+	287	71894220	nanA	MS53_0198	-	N-acetylneuraminate lyase
196	 29.11	0	221259..224099	-	946	71894221	-	MS53_0199	-	hypothetical protein
197	 34.43	+1	224278..225282	-	334	71894222	gap	MS53_0200	-	glyceraldehyde-3-P dehydrogenase
198	 34.44	+1	225402..227291	-	629	71894223	-	MS53_0201	-	putative phase-variable hemagglutinin
199	 33.33	+1	227337..227678	-	113	71894224	-	MS53_0202	-	putative phase-variable hemagglutinin
200	 34.64	+1	227833..228750	-	305	71894225	-	MS53_0203	-	putative phase-variable hemagglutinin
201	 34.64	+1	228905..229822	-	305	71894226	-	MS53_0204	-	putative phase-variable hemagglutinin
202	 35.50	+1	229977..231086	-	369	71894227	-	MS53_0205	-	putative phase-variable hemagglutinin
203	 35.60	+1	231410..232423	-	337	71894228	-	MS53_0206	-	putative phase-variable hemagglutinin
204	 34.07	+1	232474..233148	-	224	71894229	-	MS53_0207	-	putative phase-variable hemagglutinin
205	 29.75	0	233138..233500	-	120	71894230	-	MS53_0208	-	putative phase-variable hemagglutinin
206	 33.86	+1	233554..234501	-	315	71894231	-	MS53_0209	-	putative phase-variable hemagglutinin
207	 33.09	0	234552..235379	-	275	71894232	-	MS53_0210	-	putative phase-variable hemagglutinin
208	 31.06	0	235543..236643	-	366	71894233	-	MS53_0211	-	putative phase-variable hemagglutinin
209	 36.70	+1	236646..236912	-	88	71894234	-	MS53_0212	-	putative phase-variable hemagglutinin
210	 26.24	0	236909..237049	-	46	71894235	-	MS53_0213	-	putative phase-variable hemagglutinin
211	 34.27	+1	237030..237350	-	106	71894236	-	MS53_0214	-	putative phase-variable hemagglutinin
212	 29.48	0	237340..237702	-	120	71894237	-	MS53_0215	-	putative phase-variable hemagglutinin
213	 35.12	+1	237756..239714	-	652	71894238	-	MS53_0216	-	putative phase-variable hemagglutinin
214	 32.48	0	239715..240185	-	156	71894239	-	MS53_0217	-	putative phase-variable hemagglutinin
215	 37.62	+1	240212..240514	-	100	71894240	-	MS53_0218	-	putative phase-variable hemagglutinin
216	 33.87	+1	240538..241281	-	247	71894241	-	MS53_0219	-	putative phase-variable hemagglutinin
217	 34.78	+1	241311..242210	-	299	71894242	-	MS53_0220	-	putative phase-variable hemagglutinin
218	 34.43	+1	242419..243417	-	332	71894243	-	MS53_0221	-	putative phase-variable hemagglutinin
219	 34.45	+1	243447..245411	-	654	71894244	-	MS53_0222	-	putative phase-variable hemagglutinin
220	 32.26	0	245412..245876	-	154	71894245	-	MS53_0223	-	putative phase-variable hemagglutinin
221	 33.11	0	245956..246840	-	294	71894246	-	MS53_0224	-	putative phase-variable hemagglutinin
222	 33.64	+1	246877..247860	-	327	71894247	-	MS53_0225	-	putative phase-variable hemagglutinin
223	 33.51	+1	247911..249011	-	366	71894248	-	MS53_0226	-	putative phase-variable hemagglutinin
224	 31.36	0	249033..249740	-	235	71894249	-	MS53_0227	-	putative phase-variable hemagglutinin
225	 32.51	0	249721..249963	-	80	71894250	-	MS53_0228	-	putative phase-variable hemagglutinin
226	 35.98	+1	249993..251921	-	642	71894251	-	MS53_0229	-	putative phase-variable hemagglutinin
227	 34.58	+1	251977..252456	-	159	71894252	-	MS53_0230	-	putative phase-variable hemagglutinin
228	 35.14	+1	252510..252896	-	128	71894253	-	MS53_0231	-	putative phase-variable hemagglutinin
229	 36.59	+1	252877..254349	-	490	71894254	-	MS53_0232	-	putative phase-variable hemagglutinin
230	 35.81	+1	254497..255948	-	483	71894255	-	MS53_0233	-	putative phase-variable hemagglutinin
231	 30.18	0	255994..256500	-	168	71894256	-	MS53_0234	-	putative phase-variable hemagglutinin
232	 35.11	+1	256530..257597	-	355	71894257	-	MS53_0235	-	putative phase-variable hemagglutinin
233	 34.41	+1	257681..258976	-	431	71894258	-	MS53_0236	-	putative phase-variable hemagglutinin
234	 36.00	+1	259094..261046	-	650	71894259	-	MS53_0237	-	putative phase-variable hemagglutinin
235	 31.00	0	261101..261571	-	156	71894260	-	MS53_0238	-	putative phase-variable hemagglutinin
236	 33.93	+1	261641..262651	-	336	71894261	-	MS53_0239	-	putative phase-variable hemagglutinin
237	 32.42	0	262963..263619	-	218	71894262	-	MS53_0240	-	putative phase-variable hemagglutinin
238	 35.84	+1	263646..265562	-	638	71894263	-	MS53_0241	-	putative phase-variable hemagglutinin
239	 31.21	0	265608..266219	-	203	71894264	-	MS53_0242	-	putative phase-variable hemagglutinin
240	 33.04	0	266899..267573	-	224	71894265	-	MS53_0243	-	putative phase-variable hemagglutinin
241	 33.25	0	267625..268779	-	384	71894266	-	MS53_0244	-	putative phase-variable hemagglutinin
242	 32.77	0	269073..270146	-	357	71894267	-	MS53_0245	-	putative phase-variable hemagglutinin
243	 34.52	+1	270176..270679	-	167	71894268	-	MS53_0246	-	putative phase-variable hemagglutinin
244	 36.08	+1	270658..272115	-	485	71894269	-	MS53_0247	-	putative phase-variable hemagglutinin
245	 33.18	0	272142..272810	-	222	71894270	-	MS53_0248	-	putative phase-variable hemagglutinin
246	 36.00	+1	273122..275074	-	650	71894271	-	MS53_0249	-	putative phase-variable hemagglutinin
247	 31.49	0	275101..275589	-	162	71894272	-	MS53_0250	-	putative phase-variable hemagglutinin
248	 30.57	0	275640..276653	-	337	71894273	-	MS53_0251	-	putative phase-variable hemagglutinin
249	 33.42	+1	276683..277813	-	376	71894274	-	MS53_0252	-	putative phase-variable hemagglutinin
250	 35.12	+1	278137..279144	-	335	71894275	-	MS53_0253	-	putative phase-variable hemagglutinin
251	 31.98	0	279264..280298	-	344	71894276	-	MS53_0254	-	putative phase-variable hemagglutinin
252	 33.05	0	280328..281392	-	354	71894277	-	MS53_0255	-	putative phase-variable hemagglutinin
253	 35.06	+1	281422..282000	-	192	71894278	-	MS53_0256	-	putative phase-variable hemagglutinin
254	 37.56	+1	282000..283349	-	449	71894279	-	MS53_0257	-	putative phase-variable hemagglutinin
255	 32.54	0	283404..283907	-	167	71894280	-	MS53_0258	-	putative phase-variable hemagglutinin
256	 35.58	+1	283940..285007	-	355	71894281	-	MS53_0259	-	putative phase-variable hemagglutinin
257	 33.91	+1	285040..285561	-	173	71894282	-	MS53_0260	-	putative phase-variable hemagglutinin
258	 33.13	0	285637..286119	-	160	71894283	-	MS53_0261	-	putative phase-variable hemagglutinin
259	 35.70	+1	286431..288416	-	661	71894284	-	MS53_0262	-	putative phase-variable hemagglutinin
260	 30.98	0	288443..288994	-	183	71894285	-	MS53_0263	-	putative phase-variable hemagglutinin
261	 29.44	0	289494..290186	-	230	71894286	-	MS53_0264	-	putative phase-variable hemagglutinin
262	 31.51	0	290213..290596	-	127	71894287	-	MS53_0265	-	putative phase-variable hemagglutinin
263	 34.20	+1	290577..290807	-	76	71894288	-	MS53_0266	-	putative phase-variable hemagglutinin
264	 34.56	+1	290812..291219	-	135	71894289	-	MS53_0267	-	putative phase-variable hemagglutinin
265	 37.08	+1	292135..293844	+	569	71894290	vlhA	MS53_0268	-	phase-variable hemagglutinin
266	 34.31	+1	293844..294455	+	203	71894291	-	MS53_0269	-	putative phase-variable hemagglutinin
267	 34.43	+1	294593..295597	+	334	71894292	gapA	MS53_0270	-	glyceraldehyde 3-phosphate dehydrogenase
268	 23.21	-1	295849..297597	+	582	71894293	uvrC	MS53_0271	-	excinuclease ABC subunit C
269	 35.38	+1	297651..298775	+	374	71894294	pdhA	MS53_0272	-	pyruvate dehydrogenase E1 component, alpha subunit
270	 39.46	+2	298772..299767	+	331	71894295	pdhB	MS53_0273	-	pyruvate dehydrogenase E1 component, beta subunit
271	 36.16	+1	299788..300672	+	294	71894296	pdhC	MS53_0274	-	dihydrolipoamide acetyltransferase
272	 38.15	+2	300674..302542	+	622	71894297	pdhD	MS53_0275	-	dihydrolipoamide dehydrogenase
273	 18.23	-2	304268..304651	+	127	71894298	-	MS53_0277	-	hypothetical protein
274	 26.02	0	305657..306586	+	309	71894299	-	MS53_0279	-	putative MGPA-like protein
275	 22.85	-1	309020..309763	+	247	71894300	licA	MS53_0282	-	PTS system, lichenan-specific IIA component
276	 24.79	0	310107..311768	+	553	71894301	-	MS53_0283	-	putative transposase,undefined
277	 26.71	0	311934..313292	-	452	71894302	-	MS53_0284	-	hypothetical protein
278	 28.76	0	313361..315700	-	779	71894303	-	MS53_0285	-	hypothetical protein
279	 20.41	-1	316115..316501	+	128	71894304	-	MS53_0286	-	hypothetical protein
280	 27.41	0	316527..316982	+	151	71894305	-	MS53_0287	-	hypothetical protein
281	 27.41	0	319033..319353	+	106	71894306	-	MS53_0288	-	hypothetical protein
282	 15.53	-2	320837..321055	+	72	71894307	-	MS53_0290	-	hypothetical protein
283	 22.22	-1	321056..321433	+	125	71894308	-	MS53_0291	-	hypothetical protein
284	 27.00	0	321706..321942	+	78	71894309	-	MS53_0292	-	hypothetical protein
285	 18.63	-2	321946..323577	+	543	71894310	-	MS53_0293	-	hypothetical protein
286	 20.15	-1	323612..325492	+	626	71894311	-	MS53_0294	-	hypothetical protein
287	 32.21	0	327690..328670	-	326	71894312	pfk	MS53_0296	-	6-phosphofructokinase
288	 33.21	0	328667..329503	-	278	71894313	folD	MS53_0297	-	methylenetetrahydrofolate dehydrogenase / methenyltetrahydrofolate cyclohydrolase
289	 27.93	0	329491..331989	-	832	71894314	valS	MS53_0298	-	valyl-tRNA synthetase
290	 37.02	+1	332304..333197	+	297	71894315	-	MS53_0299	-	putative endoglucanase
28.74	MEAN

4.56	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.