IslandPathversion 1.0

IslandPath Analysis: Mycoplasma synoviae 53



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 28.74 STD DEV: 4.56
Mycoplasma synoviae 53, complete genome - 1..799476
672 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
159	 26.85	0	171548..172858	-	436	71894184	-	MS53_0161	-	putative type III restriction-modification system: methylase
160	 26.19	0	173238..174161	-	307	71894185	-	MS53_0162	-	hypothetical protein
161	 34.33	+1	174257..174457	+	66	71894186	rpmF	MS53_0163	-	50S ribosomal protein L32
162	 29.15	0	174530..175126	+	198	71894187	ruvA	MS53_0164	-	Holliday junction DNA helicase motor protein
163	 28.96	0	175140..176054	+	304	71894188	ruvB	MS53_0165	-	Holliday junction DNA helicase B
164	 29.67	0	178202..180796	+	864	71894189	secD	MS53_0167	-	bifunctional preprotein translocase subunit SecD/SecF
165	 31.37	0	180846..182120	+	424	71894190	obgE	MS53_0168	-	GTPase ObgE
166	 29.71	0	182120..183112	+	330	71894191	trpS	MS53_0169	-	tryptophanyl-tRNA synthetase
167	 30.58	0	183112..184857	+	581	71894192	thrS	MS53_0170	-	threonyl-tRNA synthetase
168	 22.97	-1	184850..185341	+	163	71894193	-	MS53_0171	-	hypothetical protein
169	 25.80	0	185407..186906	+	499	71894194	-	MS53_0172	-	hypothetical protein
170	 31.46	0	186953..187273	-	106	71894195	hit	MS53_0173	-	HIT-like protein
171	 30.16	0	187273..188469	-	398	71894196	-	MS53_0174	-	putative P60-like lipoprotein
172	 31.44	0	188469..190583	-	704	71894197	-	MS53_0175	-	putative membrane protein P80
173	 22.87	-1	190716..191279	+	187	71894198	-	MS53_0176	-	hypothetical protein
174	 26.16	0	191607..192164	-	185	71894199	-	MS53_0177	-	putative transposase ISMHp1-like
175	 24.42	0	192128..193159	-	343	71894200	-	MS53_0178	-	putative transposase ISMHp1-like
176	 28.28	0	193410..194042	-	210	71894201	-	MS53_0179	-	putative chromate transport protein
177	 27.33	0	194072..194671	-	199	71894202	-	MS53_0180	-	putative chromate transport protein
178	 34.21	+1	194710..196650	-	646	71894203	tktA	MS53_0181	-	transketolase
179	 26.72	0	196659..197384	-	241	71894204	hemK	MS53_0182	-	protoporphirogen oxidase HemK
180	 34.17	+1	197384..198463	-	359	71894205	prfA	MS53_0183	-	peptide chain release factor 1
181	 33.24	0	199080..200195	+	371	71894206	oppB	MS53_0184	-	putative oligopeptide transport system permease protein
182	 32.48	0	200246..201184	+	312	71894207	oppC	MS53_0185	-	oligopeptide transport system permease protein
183	 33.96	+1	201190..202947	+	585	71894208	-	MS53_0186	-	putative oligopeptide ABC transporter ATP-binding protein OppF
184	 32.72	0	202954..204255	+	433	71894209	oppD	MS53_0187	-	oligopeptide ABC transporter ATP-binding protein OppD
185	 33.57	+1	204266..210175	+	1969	71894210	-	MS53_0188	-	hypothetical protein
186	 34.38	+1	210264..210551	+	95	71894211	-	MS53_0189	-	hypothetical protein
187	 33.56	+1	210563..213247	+	894	71894212	-	MS53_0190	-	putative lipoprotein
188	 33.88	+1	213849..215687	-	612	71894213	-	MS53_0191	-	hypothetical protein
189	 31.85	0	215696..216166	-	156	71894214	-	MS53_0192	-	hypothetical protein
190	 30.34	0	216417..217118	+	233	71894215	nagB	MS53_0193	-	glucosamine-6-phosphate isomerase
191	 27.05	0	217168..218250	+	360	71894216	nagA	MS53_0194	-	N-acetylglucosamine 6-P deacetylase
192	 31.12	0	218237..219094	-	285	71894217	nagC	MS53_0195	-	N-acetylmannosamine kinase
193	 27.41	0	219162..219617	+	151	71894218	-	MS53_0196	-	hypothetical protein
194	 33.62	+1	219617..220312	+	231	71894219	-	MS53_0197	-	N-acetylmannosamine-6-phosphate 2-epimerase
195	 32.99	0	220332..221195	+	287	71894220	nanA	MS53_0198	-	N-acetylneuraminate lyase
196	 29.11	0	221259..224099	-	946	71894221	-	MS53_0199	-	hypothetical protein
197	 34.43	+1	224278..225282	-	334	71894222	gap	MS53_0200	-	glyceraldehyde-3-P dehydrogenase
198	 34.44	+1	225402..227291	-	629	71894223	-	MS53_0201	-	putative phase-variable hemagglutinin
199	 33.33	+1	227337..227678	-	113	71894224	-	MS53_0202	-	putative phase-variable hemagglutinin
200	 34.64	+1	227833..228750	-	305	71894225	-	MS53_0203	-	putative phase-variable hemagglutinin
201	 34.64	+1	228905..229822	-	305	71894226	-	MS53_0204	-	putative phase-variable hemagglutinin
202	 35.50	+1	229977..231086	-	369	71894227	-	MS53_0205	-	putative phase-variable hemagglutinin
203	 35.60	+1	231410..232423	-	337	71894228	-	MS53_0206	-	putative phase-variable hemagglutinin
204	 34.07	+1	232474..233148	-	224	71894229	-	MS53_0207	-	putative phase-variable hemagglutinin
205	 29.75	0	233138..233500	-	120	71894230	-	MS53_0208	-	putative phase-variable hemagglutinin
206	 33.86	+1	233554..234501	-	315	71894231	-	MS53_0209	-	putative phase-variable hemagglutinin
207	 33.09	0	234552..235379	-	275	71894232	-	MS53_0210	-	putative phase-variable hemagglutinin
208	 31.06	0	235543..236643	-	366	71894233	-	MS53_0211	-	putative phase-variable hemagglutinin
209	 36.70	+1	236646..236912	-	88	71894234	-	MS53_0212	-	putative phase-variable hemagglutinin
210	 26.24	0	236909..237049	-	46	71894235	-	MS53_0213	-	putative phase-variable hemagglutinin
211	 34.27	+1	237030..237350	-	106	71894236	-	MS53_0214	-	putative phase-variable hemagglutinin
212	 29.48	0	237340..237702	-	120	71894237	-	MS53_0215	-	putative phase-variable hemagglutinin
213	 35.12	+1	237756..239714	-	652	71894238	-	MS53_0216	-	putative phase-variable hemagglutinin
214	 32.48	0	239715..240185	-	156	71894239	-	MS53_0217	-	putative phase-variable hemagglutinin
215	 37.62	+1	240212..240514	-	100	71894240	-	MS53_0218	-	putative phase-variable hemagglutinin
216	 33.87	+1	240538..241281	-	247	71894241	-	MS53_0219	-	putative phase-variable hemagglutinin
217	 34.78	+1	241311..242210	-	299	71894242	-	MS53_0220	-	putative phase-variable hemagglutinin
218	 34.43	+1	242419..243417	-	332	71894243	-	MS53_0221	-	putative phase-variable hemagglutinin
219	 34.45	+1	243447..245411	-	654	71894244	-	MS53_0222	-	putative phase-variable hemagglutinin
220	 32.26	0	245412..245876	-	154	71894245	-	MS53_0223	-	putative phase-variable hemagglutinin
221	 33.11	0	245956..246840	-	294	71894246	-	MS53_0224	-	putative phase-variable hemagglutinin
222	 33.64	+1	246877..247860	-	327	71894247	-	MS53_0225	-	putative phase-variable hemagglutinin
223	 33.51	+1	247911..249011	-	366	71894248	-	MS53_0226	-	putative phase-variable hemagglutinin
224	 31.36	0	249033..249740	-	235	71894249	-	MS53_0227	-	putative phase-variable hemagglutinin
225	 32.51	0	249721..249963	-	80	71894250	-	MS53_0228	-	putative phase-variable hemagglutinin
226	 35.98	+1	249993..251921	-	642	71894251	-	MS53_0229	-	putative phase-variable hemagglutinin
227	 34.58	+1	251977..252456	-	159	71894252	-	MS53_0230	-	putative phase-variable hemagglutinin
228	 35.14	+1	252510..252896	-	128	71894253	-	MS53_0231	-	putative phase-variable hemagglutinin
229	 36.59	+1	252877..254349	-	490	71894254	-	MS53_0232	-	putative phase-variable hemagglutinin
230	 35.81	+1	254497..255948	-	483	71894255	-	MS53_0233	-	putative phase-variable hemagglutinin
231	 30.18	0	255994..256500	-	168	71894256	-	MS53_0234	-	putative phase-variable hemagglutinin
232	 35.11	+1	256530..257597	-	355	71894257	-	MS53_0235	-	putative phase-variable hemagglutinin
233	 34.41	+1	257681..258976	-	431	71894258	-	MS53_0236	-	putative phase-variable hemagglutinin
234	 36.00	+1	259094..261046	-	650	71894259	-	MS53_0237	-	putative phase-variable hemagglutinin
235	 31.00	0	261101..261571	-	156	71894260	-	MS53_0238	-	putative phase-variable hemagglutinin
236	 33.93	+1	261641..262651	-	336	71894261	-	MS53_0239	-	putative phase-variable hemagglutinin
237	 32.42	0	262963..263619	-	218	71894262	-	MS53_0240	-	putative phase-variable hemagglutinin
238	 35.84	+1	263646..265562	-	638	71894263	-	MS53_0241	-	putative phase-variable hemagglutinin
239	 31.21	0	265608..266219	-	203	71894264	-	MS53_0242	-	putative phase-variable hemagglutinin
240	 33.04	0	266899..267573	-	224	71894265	-	MS53_0243	-	putative phase-variable hemagglutinin
241	 33.25	0	267625..268779	-	384	71894266	-	MS53_0244	-	putative phase-variable hemagglutinin
242	 32.77	0	269073..270146	-	357	71894267	-	MS53_0245	-	putative phase-variable hemagglutinin
243	 34.52	+1	270176..270679	-	167	71894268	-	MS53_0246	-	putative phase-variable hemagglutinin
244	 36.08	+1	270658..272115	-	485	71894269	-	MS53_0247	-	putative phase-variable hemagglutinin
245	 33.18	0	272142..272810	-	222	71894270	-	MS53_0248	-	putative phase-variable hemagglutinin
246	 36.00	+1	273122..275074	-	650	71894271	-	MS53_0249	-	putative phase-variable hemagglutinin
247	 31.49	0	275101..275589	-	162	71894272	-	MS53_0250	-	putative phase-variable hemagglutinin
248	 30.57	0	275640..276653	-	337	71894273	-	MS53_0251	-	putative phase-variable hemagglutinin
249	 33.42	+1	276683..277813	-	376	71894274	-	MS53_0252	-	putative phase-variable hemagglutinin
250	 35.12	+1	278137..279144	-	335	71894275	-	MS53_0253	-	putative phase-variable hemagglutinin
251	 31.98	0	279264..280298	-	344	71894276	-	MS53_0254	-	putative phase-variable hemagglutinin
252	 33.05	0	280328..281392	-	354	71894277	-	MS53_0255	-	putative phase-variable hemagglutinin
253	 35.06	+1	281422..282000	-	192	71894278	-	MS53_0256	-	putative phase-variable hemagglutinin
254	 37.56	+1	282000..283349	-	449	71894279	-	MS53_0257	-	putative phase-variable hemagglutinin
255	 32.54	0	283404..283907	-	167	71894280	-	MS53_0258	-	putative phase-variable hemagglutinin
256	 35.58	+1	283940..285007	-	355	71894281	-	MS53_0259	-	putative phase-variable hemagglutinin
257	 33.91	+1	285040..285561	-	173	71894282	-	MS53_0260	-	putative phase-variable hemagglutinin
258	 33.13	0	285637..286119	-	160	71894283	-	MS53_0261	-	putative phase-variable hemagglutinin
28.74	MEAN

4.56	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.