IslandPath Analysis: Mycoplasma synoviae 53



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 28.74   STD DEV: 4.56
Mycoplasma synoviae 53, complete genome - 1..799476
672 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
109	 28.35	0	114625..115326	-	233	71894134	-	MS53_0110	-	putative DNase/RNase endonuclease
110	 23.73	-1	115323..116624	-	433	71894135	-	MS53_0111	-	putative tRNA (Uracil-5-) -methyltransferase
111	 26.89	0	116626..117168	-	180	71894136	-	MS53_0112	-	putative methyltransferase
112	 24.76	0	117161..117778	-	205	71894137	trmB	MS53_0113	-	tRNA (guanine-N(7))-methyltransferase
113	 33.59	+1	117804..118994	-	396	71894138	pgk	MS53_0114	-	phosphoglycerate kinase
114	 31.69	0	119274..119822	+	182	71894139	-	MS53_0115	-	hypothetical protein
115	 28.19	0	119827..120273	+	148	71894140	-	MS53_0116	-	hypothetical protein
116	 26.48	0	120270..121364	+	364	71894141	-	MS53_0117	-	hypothetical protein
117	 27.62	0	121423..122262	-	279	71894142	-	MS53_0118	-	hypothetical protein
118	 25.15	0	122274..122945	-	223	71894143	rpe	MS53_0119	-	ribulose-phosphate 3-epimerase
119	 25.03	0	122932..123762	-	276	161611235	-	MS53_0120	-	putative ATP/GTP-binding protein
120	 26.81	0	123762..124742	-	326	71894145	pknB	MS53_0121	-	serine/threonine-protein kinase
121	 28.11	0	124762..125508	-	248	71894146	prpC	MS53_0122	-	protein phosphatase
122	 29.48	0	125501..126097	-	198	71894147	gmk	MS53_0123	-	guanylate kinase
123	 26.80	0	126182..126334	-	50	71894148	rpmG	MS53_0124	-	50S ribosomal protein L33
124	 29.86	0	126367..127200	-	277	71894149	nfo	MS53_0125	-	endonuclease IV
125	 27.28	0	127188..128261	-	357	71894150	-	MS53_0126	-	putative potassium channel protein
126	 26.56	0	128262..129236	-	324	71894151	-	MS53_0127	-	hypothetical protein
127	 30.90	0	129542..132823	+	1093	161611234	secA	MS53_0128	-	preprotein translocase subunit SecA
128	 24.85	0	132878..134728	+	616	71894153	-	MS53_0129	-	hypothetical protein
129	 26.50	0	134728..135429	+	233	71894154	bcrA	MS53_0130	-	ABC transporter ATP-binding protein
130	 25.80	0	135422..136483	+	353	71894155	-	MS53_0131	-	hypothetical protein
131	 25.70	0	136473..137402	+	309	71894156	-	MS53_0132	-	hypothetical protein
132	 24.50	0	137392..138297	+	301	71894157	-	MS53_0133	-	hypothetical protein
133	 22.95	-1	138287..139105	+	272	71894158	-	MS53_0134	-	hypothetical protein
134	 32.81	0	140798..142141	+	447	71894159	xylF	MS53_0136	-	ABC transporter xylose-binding lipoprotein
135	 28.37	0	142202..144013	+	603	71894160	mglA	MS53_0137	-	sugar ABC transporter ATP-binding protein
136	 28.73	0	144045..145607	+	520	71894161	-	MS53_0138	-	putative sugar ABC transporter permease protein
137	 31.87	0	145607..146560	+	317	71894162	-	MS53_0139	-	putative sugar ABC transporter permease protein
138	 23.24	-1	146563..147216	+	217	71894163	dgk	MS53_0140	-	deoxyguanosine kinase
139	 26.07	0	147207..147839	+	210	71894164	-	MS53_0141	-	hypothetical protein
140	 29.84	0	147872..149188	-	438	71894165	engA	MS53_0142	-	GTP-binding protein EngA
141	 29.11	0	149185..149847	-	220	71894166	cmk	MS53_0143	-	cytidylate kinase
142	 23.01	-1	149844..150308	-	154	71894167	-	MS53_0144	-	hypothetical protein
143	 28.96	0	150348..151400	+	350	71894168	ftsY	MS53_0145	-	cell division protein FtsY
144	 22.22	-1	151393..151626	+	77	71894169	-	MS53_0146	-	hypothetical protein
145	 36.62	+1	151667..154249	-	860	71894170	ptsG	MS53_0147	-	PTS system, glucose-specific IIABC component
146	 31.32	0	154803..155348	+	181	71894171	ppa	MS53_0148	-	inorganic pyrophosphatase
147	 33.05	0	155351..156421	+	356	71894172	pepP	MS53_0149	-	XAA-Pro aminopeptidase
148	 31.33	0	156485..157480	+	331	71894173	prsA	MS53_0150	-	ribose-phosphate pyrophosphokinase
149	 27.40	0	157518..158141	+	207	71894174	gidB	MS53_0151	-	glucose-inhibited division protein B
150	 29.93	0	158157..159536	-	459	71894175	-	MS53_0152	-	putative mercuric reductase
151	 34.18	+1	159673..161088	-	471	71894176	pepA-1	MS53_0153	-	leucyl aminopeptidase
152	 32.32	0	161157..162539	-	460	71894177	pepA	MS53_0154	-	leucyl aminopeptidase
153	 28.76	0	162891..164354	+	487	71894178	-	MS53_0155	-	hypothetical protein
154	 23.66	-1	164364..164921	+	185	71894179	-	MS53_0156	-	hypothetical protein
155	 27.89	0	164911..165810	+	299	71894180	-	MS53_0157	-	hypothetical protein
156	 31.79	0	166274..168481	+	735	71894181	-	MS53_0158	-	hypothetical protein
157	 31.91	0	168481..170025	+	514	71894182	atpA-2	MS53_0159	-	F0F1 ATP synthase subunit alpha
158	 31.78	0	170025..171437	+	470	71894183	atpD-2	MS53_0160	-	F0F1 ATP synthase subunit beta
159	 26.85	0	171548..172858	-	436	71894184	-	MS53_0161	-	putative type III restriction-modification system: methylase
160	 26.19	0	173238..174161	-	307	71894185	-	MS53_0162	-	hypothetical protein
161	 34.33	+1	174257..174457	+	66	71894186	rpmF	MS53_0163	-	50S ribosomal protein L32
162	 29.15	0	174530..175126	+	198	71894187	ruvA	MS53_0164	-	Holliday junction DNA helicase motor protein
163	 28.96	0	175140..176054	+	304	71894188	ruvB	MS53_0165	-	Holliday junction DNA helicase B
164	 29.67	0	178202..180796	+	864	71894189	secD	MS53_0167	-	bifunctional preprotein translocase subunit SecD/SecF
165	 31.37	0	180846..182120	+	424	71894190	obgE	MS53_0168	-	GTPase ObgE
166	 29.71	0	182120..183112	+	330	71894191	trpS	MS53_0169	-	tryptophanyl-tRNA synthetase
167	 30.58	0	183112..184857	+	581	71894192	thrS	MS53_0170	-	threonyl-tRNA synthetase
168	 22.97	-1	184850..185341	+	163	71894193	-	MS53_0171	-	hypothetical protein
169	 25.80	0	185407..186906	+	499	71894194	-	MS53_0172	-	hypothetical protein
170	 31.46	0	186953..187273	-	106	71894195	hit	MS53_0173	-	HIT-like protein
171	 30.16	0	187273..188469	-	398	71894196	-	MS53_0174	-	putative P60-like lipoprotein
172	 31.44	0	188469..190583	-	704	71894197	-	MS53_0175	-	putative membrane protein P80
173	 22.87	-1	190716..191279	+	187	71894198	-	MS53_0176	-	hypothetical protein
174	 26.16	0	191607..192164	-	185	71894199	-	MS53_0177	-	putative transposase ISMHp1-like
175	 24.42	0	192128..193159	-	343	71894200	-	MS53_0178	-	putative transposase ISMHp1-like
176	 28.28	0	193410..194042	-	210	71894201	-	MS53_0179	-	putative chromate transport protein
177	 27.33	0	194072..194671	-	199	71894202	-	MS53_0180	-	putative chromate transport protein
178	 34.21	+1	194710..196650	-	646	71894203	tktA	MS53_0181	-	transketolase
179	 26.72	0	196659..197384	-	241	71894204	hemK	MS53_0182	-	protoporphirogen oxidase HemK
180	 34.17	+1	197384..198463	-	359	71894205	prfA	MS53_0183	-	peptide chain release factor 1
181	 33.24	0	199080..200195	+	371	71894206	oppB	MS53_0184	-	putative oligopeptide transport system permease protein
182	 32.48	0	200246..201184	+	312	71894207	oppC	MS53_0185	-	oligopeptide transport system permease protein
183	 33.96	+1	201190..202947	+	585	71894208	-	MS53_0186	-	putative oligopeptide ABC transporter ATP-binding protein OppF
184	 32.72	0	202954..204255	+	433	71894209	oppD	MS53_0187	-	oligopeptide ABC transporter ATP-binding protein OppD
185	 33.57	+1	204266..210175	+	1969	71894210	-	MS53_0188	-	hypothetical protein
186	 34.38	+1	210264..210551	+	95	71894211	-	MS53_0189	-	hypothetical protein
187	 33.56	+1	210563..213247	+	894	71894212	-	MS53_0190	-	putative lipoprotein
188	 33.88	+1	213849..215687	-	612	71894213	-	MS53_0191	-	hypothetical protein
189	 31.85	0	215696..216166	-	156	71894214	-	MS53_0192	-	hypothetical protein
190	 30.34	0	216417..217118	+	233	71894215	nagB	MS53_0193	-	glucosamine-6-phosphate isomerase
191	 27.05	0	217168..218250	+	360	71894216	nagA	MS53_0194	-	N-acetylglucosamine 6-P deacetylase
192	 31.12	0	218237..219094	-	285	71894217	nagC	MS53_0195	-	N-acetylmannosamine kinase
193	 27.41	0	219162..219617	+	151	71894218	-	MS53_0196	-	hypothetical protein
194	 33.62	+1	219617..220312	+	231	71894219	-	MS53_0197	-	N-acetylmannosamine-6-phosphate 2-epimerase
195	 32.99	0	220332..221195	+	287	71894220	nanA	MS53_0198	-	N-acetylneuraminate lyase
196	 29.11	0	221259..224099	-	946	71894221	-	MS53_0199	-	hypothetical protein
197	 34.43	+1	224278..225282	-	334	71894222	gap	MS53_0200	-	glyceraldehyde-3-P dehydrogenase
198	 34.44	+1	225402..227291	-	629	71894223	-	MS53_0201	-	putative phase-variable hemagglutinin
199	 33.33	+1	227337..227678	-	113	71894224	-	MS53_0202	-	putative phase-variable hemagglutinin
200	 34.64	+1	227833..228750	-	305	71894225	-	MS53_0203	-	putative phase-variable hemagglutinin
201	 34.64	+1	228905..229822	-	305	71894226	-	MS53_0204	-	putative phase-variable hemagglutinin
202	 35.50	+1	229977..231086	-	369	71894227	-	MS53_0205	-	putative phase-variable hemagglutinin
203	 35.60	+1	231410..232423	-	337	71894228	-	MS53_0206	-	putative phase-variable hemagglutinin
204	 34.07	+1	232474..233148	-	224	71894229	-	MS53_0207	-	putative phase-variable hemagglutinin
205	 29.75	0	233138..233500	-	120	71894230	-	MS53_0208	-	putative phase-variable hemagglutinin
206	 33.86	+1	233554..234501	-	315	71894231	-	MS53_0209	-	putative phase-variable hemagglutinin
207	 33.09	0	234552..235379	-	275	71894232	-	MS53_0210	-	putative phase-variable hemagglutinin
208	 31.06	0	235543..236643	-	366	71894233	-	MS53_0211	-	putative phase-variable hemagglutinin
28.74	MEAN

4.56	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.