IslandPath Analysis: Mycobacterium sp. KMS



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 68.56   STD DEV: 3.23
Mycobacterium sp. KMS, complete genome - 1..5737227
5460 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
745	 67.34	0	787702..788586	+	294	119866802	-	Mkms_0748	-	hypothetical protein
746	 69.74	0	788595..789506	-	303	119866803	-	Mkms_0749	-	naphthoate synthase
747	 68.63	0	789518..789976	-	152	119866804	-	Mkms_0750	-	hypothetical protein
748	 70.42	0	789984..790676	-	230	119866805	-	Mkms_0751	-	HAD family hydrolase
749	 71.30	0	790686..791936	-	416	119866806	-	Mkms_0752	-	RNA polymerase ECF-subfamily sigma factor
750	 68.23	0	792018..793616	-	532	119866807	-	Mkms_0753	-	acyl-CoA synthetase
751	 72.73	+1	793853..794116	+	87	119866808	-	Mkms_0754	-	hypothetical protein
752	 64.30	-1	794110..794616	-	168	119866809	-	Mkms_0755	-	DGPFAETKE family protein
753	 69.09	0	794733..796343	+	536	119866810	-	Mkms_0756	-	amidohydrolase 3
754	 68.07	0	796375..797943	+	522	119866811	-	Mkms_0757	-	AMP-dependent synthetase and ligase
755	 71.75	0	797963..798925	+	320	119866812	-	Mkms_0758	-	O-succinylbenzoate synthase
756	 70.43	0	798979..799935	+	318	119866813	-	Mkms_0759	-	hypothetical protein
757	 69.93	0	799946..800527	+	193	119866814	-	Mkms_0760	-	TetR family transcriptional regulator
758	 72.67	+1	800607..801572	+	321	119866815	-	Mkms_0761	-	AraC family transcriptional regulator
759	 71.95	+1	801584..802321	+	245	119866816	-	Mkms_0762	-	ThiJ/PfpI domain-containing protein
760	 68.85	0	802332..802835	+	167	119866817	-	Mkms_0763	-	hypothetical protein
761	 68.32	0	802843..803688	+	281	119866818	-	Mkms_0764	-	alpha/beta hydrolase fold
762	 72.02	+1	803691..805334	+	547	119866819	-	Mkms_0765	-	2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylic acid synthase/2-oxoglutarate decarboxylase
763	 70.18	0	805331..805843	+	170	119866820	-	Mkms_0766	-	putative transmembrane protein
764	 68.05	0	805898..806404	+	168	119866821	-	Mkms_0767	-	hypothetical protein
765	 65.72	0	806417..807583	+	388	119866822	-	Mkms_0768	-	alcohol dehydrogenase
766	 67.72	0	807593..808255	-	220	119866823	-	Mkms_0769	-	hypothetical protein
767	 64.50	-1	808398..809642	+	414	119866824	-	Mkms_0770	-	peptidase M14, carboxypeptidase A
768	 69.14	0	809639..812668	+	1009	119866825	-	Mkms_0771	-	hypothetical protein
769	 72.40	+1	812665..815769	+	1034	119866826	-	Mkms_0772	-	hypothetical protein
770	 69.53	0	815766..820232	+	1488	119866827	-	Mkms_0773	-	hypothetical protein
771	 71.26	0	820229..821947	+	572	119866828	-	Mkms_0774	-	hypothetical protein
772	 71.53	0	822007..823137	+	376	119866829	-	Mkms_0775	-	glycosyl transferase, group 1
773	 68.61	0	823141..823965	-	274	119866830	-	Mkms_0776	-	short chain dehydrogenase
774	 71.57	0	824037..824729	+	230	119866831	ubiE	Mkms_0777	-	ubiquinone/menaquinone biosynthesis methyltransferase
775	 66.61	0	824829..826613	+	594	119866832	-	Mkms_0778	-	amine oxidase
776	 67.73	0	826616..827464	-	282	119866833	-	Mkms_0779	-	extradiol ring-cleavage dioxygenase III subunit B
777	 67.83	0	827499..828101	-	200	119866834	-	Mkms_0780	-	hypothetical protein
778	 69.64	0	828157..828795	-	212	119866835	-	Mkms_0781	-	hypothetical protein
779	 73.29	+1	828818..831082	-	754	119866836	-	Mkms_0782	-	phospholipase D/transphosphatidylase
780	 71.20	0	831114..831554	-	146	119866837	-	Mkms_0783	-	hypothetical protein
781	 71.83	+1	831817..833037	-	406	119866838	-	Mkms_0784	-	geranylgeranyl reductase
782	 69.58	0	833037..834065	+	342	119866839	-	Mkms_0785	-	trans-hexaprenyltranstransferase
783	 67.12	0	834132..835007	+	291	119866840	-	Mkms_0786	-	heat shock protein HtpX
784	 72.62	+1	835128..835715	+	195	119866841	-	Mkms_0787	-	hypothetical protein
785	 67.74	0	835719..836744	-	341	119866842	-	Mkms_0788	-	NAD(P)H-dependent glycerol-3-phosphate dehydrogenase
786	 71.05	0	836852..838699	+	615	119866843	-	Mkms_0789	-	hypothetical protein
787	 70.43	0	838677..839234	+	185	119866844	-	Mkms_0790	-	hypothetical protein
788	 62.78	-1	839221..839760	-	179	119866845	-	Mkms_0791	-	nucleotide-binding protein
789	 65.22	-1	840393..840599	+	68	119866846	-	Mkms_0792	-	hypothetical protein
790	 64.10	-1	840765..841193	-	142	119866847	-	Mkms_0793	-	hypothetical protein
791	 66.17	0	841620..844619	+	999	119866848	-	Mkms_0794	-	PKD domain-containing protein
792	 70.90	0	844638..847403	-	921	119866849	-	Mkms_0795	-	regulatory protein, LuxR
793	 69.40	0	847566..848150	-	194	119866850	-	Mkms_0796	-	MarR family transcriptional regulator
794	 70.47	0	848393..850207	+	604	119866851	-	Mkms_0797	-	protein kinase
795	 70.74	0	850300..851550	+	416	119866852	-	Mkms_0798	-	3-oxoacyl-(acyl carrier protein) synthase II
796	 70.87	0	851624..853882	+	752	119866853	-	Mkms_0799	-	hypothetical protein
797	 71.43	0	853887..855230	+	447	119866854	-	Mkms_0800	-	cytochrome P450
798	 64.04	-1	855223..856134	-	303	119866855	-	Mkms_0801	-	cyclopropane-fatty-acyl-phospholipid synthase
799	 61.41	-2	856199..857131	-	310	119866856	-	Mkms_0802	-	cyclopropane-fatty-acyl-phospholipid synthase
800	 68.29	0	857351..858523	-	390	119866857	-	Mkms_0803	-	NAD(P) transhydrogenase subunit alpha
801	 69.80	0	858871..860052	+	393	119866858	-	Mkms_0804	-	glycosyl transferase, group 1
802	 61.64	-2	860148..860306	+	52	119866859	-	Mkms_0805	-	hypothetical protein
803	 62.12	-1	860308..860505	+	65	119866860	-	Mkms_0806	-	hypothetical protein
804	 69.08	0	860507..860920	+	137	119866861	-	Mkms_0807	-	hypothetical protein
805	 70.65	0	861217..862671	+	484	119866862	-	Mkms_0808	-	diacylglycerol O-acyltransferase
806	 68.75	0	862737..864608	+	623	119866863	-	Mkms_0809	-	protein kinase
807	 70.30	0	864643..865992	+	449	119866864	-	Mkms_0810	-	putative adenylate/guanylate cyclase
808	 65.54	0	865993..866877	-	294	119866865	-	Mkms_0811	-	hypothetical protein
809	 66.67	0	866874..867356	-	160	119866866	-	Mkms_0812	-	hypothetical protein
810	 71.49	0	867358..868581	-	407	119866867	-	Mkms_0813	-	hypothetical protein
811	 70.40	0	868623..870767	-	714	119866868	-	Mkms_0814	-	hypothetical protein
812	 68.62	0	870761..871834	-	357	119866869	-	Mkms_0815	-	hypothetical protein
813	 73.12	+1	871904..872833	-	309	119866870	-	Mkms_0816	-	alpha/beta hydrolase fold
814	 72.09	+1	872944..873201	+	85	119866871	-	Mkms_0817	-	hypothetical protein
815	 64.52	-1	873671..880048	+	2125	119866872	-	Mkms_0818	-	putative DNA helicase
816	 55.09	-2	880068..880922	+	284	119866873	-	Mkms_0819	-	hypothetical protein
817	 62.16	-1	881141..884512	+	1123	119866874	-	Mkms_0820	-	hypothetical protein
818	 62.41	-1	884509..889140	+	1543	119866875	-	Mkms_0821	-	DEAD/DEAH box helicase domain-containing protein
819	 58.93	-2	889174..890310	+	378	119866876	-	Mkms_0822	-	hypothetical protein
820	 66.43	0	890330..891577	-	415	119866877	-	Mkms_0823	-	transposase, mutator type
821	 61.09	-2	891978..892712	-	244	119866878	-	Mkms_0824	-	hypothetical protein
822	 60.84	-2	892709..894973	-	754	119866879	-	Mkms_0825	-	hypothetical protein
823	 62.55	-1	894970..897081	-	703	119866880	-	Mkms_0826	-	UvrD/REP helicase
824	 63.26	-1	897485..901090	+	1201	119866881	-	Mkms_0827	-	helicase domain-containing protein
825	 60.75	-2	901087..905106	+	1339	119866882	-	Mkms_0828	-	hypothetical protein
826	 60.17	-2	905103..908765	+	1220	119866883	-	Mkms_0829	-	helicase domain-containing protein
827	 60.92	-2	908762..910831	+	689	119866884	-	Mkms_0830	-	hypothetical protein
828	 61.65	-2	910867..911544	+	225	119866885	-	Mkms_0831	-	hypothetical protein
829	 57.95	-2	911600..912448	-	282	119866886	-	Mkms_0832	-	hypothetical protein
830	 63.04	-1	912445..913602	-	385	119866887	-	Mkms_0833	-	DNA-cytosine methyltransferase
831	 61.44	-2	913716..914117	-	133	119866888	-	Mkms_0834	-	DNA mismatch endonuclease vsr
832	 59.56	-2	914218..914667	+	149	119866889	-	Mkms_0835	-	hypothetical protein
833	 63.38	-1	914843..916180	-	445	119866890	-	Mkms_0836	-	hypothetical protein
834	 62.12	-1	916563..916958	+	131	119866891	-	Mkms_0837	-	hypothetical protein
835	 58.83	-2	916991..917947	+	318	119866892	-	Mkms_0838	-	hypothetical protein
836	 65.15	-1	918454..920436	-	660	119866893	-	Mkms_0839	-	hypothetical protein
837	 64.86	-1	920576..920908	+	110	119866894	-	Mkms_0840	-	AbrB family transcriptional regulator
838	 68.51	0	920905..921339	+	144	119866895	-	Mkms_0841	-	PilT domain-containing protein
839	 68.45	0	921858..923036	-	392	119866896	-	Mkms_0843	-	hypothetical protein
840	 67.67	0	923141..924832	+	563	119866897	-	Mkms_0844	-	hypothetical protein
841	 60.87	-2	924869..925954	-	361	119866898	-	Mkms_0845	-	5-methylcytosine-specific restriction enzyme subunit McrC
842	 60.05	-2	925951..927780	-	609	119866899	-	Mkms_0846	-	ATPase
843	 69.33	0	927774..928148	-	124	119866900	-	Mkms_0847	-	hypothetical protein
844	 67.32	0	928157..928768	-	203	119866901	-	Mkms_0848	-	hypothetical protein
68.56	MEAN

3.23	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.