IslandPathversion 1.0

IslandPath Analysis: Mycobacterium sp. KMS



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 68.56 STD DEV: 3.23
Mycobacterium sp. KMS, complete genome - 1..5737227
5460 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
543	 70.25	0	596404..598326	-	640	119866600	-	Mkms_0546	-	hypothetical protein
544	 65.52	0	598352..599746	-	464	119866601	-	Mkms_0547	-	hypothetical protein
545	 72.45	+1	599739..601226	-	495	119866602	-	Mkms_0548	-	hypothetical protein
546	 68.23	0	601421..603535	+	704	119866603	-	Mkms_0549	-	phosphate acetyltransferase
547	 67.42	0	603532..604731	+	399	119866604	-	Mkms_0550	-	acetate kinase
548	 66.22	0	604838..605512	+	224	119866605	-	Mkms_0551	-	asparagine synthase (glutamine-hydrolyzing), putative
549	 67.85	0	605509..607788	-	759	119866606	-	Mkms_0552	-	serine/threonine protein kinase
550	 68.17	0	607788..608783	-	331	119866607	-	Mkms_0553	-	extracellular solute-binding protein
551	 69.77	0	608783..610102	-	439	119866608	-	Mkms_0554	-	hypothetical protein
552	 72.76	+1	610211..610735	+	174	119866609	-	Mkms_0555	-	NUDIX hydrolase
553	 73.27	+1	610725..611405	-	226	119866610	thiE	Mkms_0556	-	thiamine-phosphate pyrophosphorylase
554	 72.66	+1	611545..612561	+	338	119866611	-	Mkms_0557	-	glycine oxidase ThiO
555	 68.18	0	612572..612769	+	65	119866612	-	Mkms_0558	-	sulfur carrier protein ThiS
556	 70.73	0	612762..613523	+	253	119866613	thiG	Mkms_0559	-	thiazole synthase
557	 74.80	+1	613532..614281	+	249	119866614	-	Mkms_0560	-	hypothetical protein
558	 68.88	0	614274..615176	+	300	119866615	-	Mkms_0561	-	ABC transporter related
559	 68.83	0	615176..615916	+	246	119866616	-	Mkms_0562	-	putative ABC transporter membrane protein
560	 64.84	-1	616691..618442	-	583	119866617	-	Mkms_0563	-	hypothetical protein
561	 65.87	0	618488..619486	+	332	119866618	-	Mkms_0564	-	HTTM domain-containing protein
562	 67.13	0	619523..621028	+	501	119866619	-	Mkms_0565	-	aminopeptidase Y
563	 69.24	0	621028..622467	+	479	119866620	-	Mkms_0566	-	aminopeptidase Y
564	 67.89	0	622957..624261	+	434	119866621	-	Mkms_0567	-	hypothetical protein
565	 69.05	0	624279..625580	-	433	119866622	-	Mkms_0568	-	uracil-xanthine permease
566	 74.52	+1	625587..626834	-	415	119866623	-	Mkms_0569	-	amino acid permease-associated region
567	 68.44	0	626844..627182	-	112	119866624	-	Mkms_0570	-	hypothetical protein
568	 68.38	0	627278..628564	+	428	119866625	-	Mkms_0571	-	TetR family transcriptional regulator
569	 67.42	0	628531..628797	-	88	119866626	-	Mkms_0572	-	hypothetical protein
570	 64.52	-1	628811..630301	-	496	119866627	-	Mkms_0573	-	FAD-dependent pyridine nucleotide-disulphide oxidoreductase
571	 70.39	0	630357..630974	-	205	119866628	-	Mkms_0574	-	hypothetical protein
572	 73.72	+1	630985..631608	-	207	119866629	-	Mkms_0575	-	hypothetical protein
573	 70.55	0	631595..632443	-	282	119866630	-	Mkms_0576	-	phosphomethylpyrimidine kinase
574	 67.97	0	632619..634382	+	587	119866631	-	Mkms_0577	-	major facilitator superfamily transporter
575	 71.41	0	634427..637186	+	919	119866632	-	Mkms_0578	-	regulatory protein, LuxR
576	 68.16	0	637196..637999	-	267	119866633	-	Mkms_0579	-	exodeoxyribonuclease III
577	 72.73	+1	638003..638893	-	296	119866634	-	Mkms_0580	-	GCN5-related N-acetyltransferase
578	 70.20	0	638902..639495	-	197	119866635	def	Mkms_0581	-	peptide deformylase
579	 64.40	-1	639633..639941	+	102	119866636	-	Mkms_0582	-	Fis family transcriptional regulator
580	 67.75	0	639967..640428	+	153	119866637	-	Mkms_0583	-	putative tuberculin related peptide
581	 69.72	0	640478..641164	+	228	119866638	-	Mkms_0584	-	superoxide dismutase, copper/zinc binding
582	 65.87	0	641142..642272	+	376	119866639	-	Mkms_0585	-	carboxylate-amine ligase
583	 68.73	0	642369..642707	+	112	119866640	-	Mkms_0586	-	hypothetical protein
584	 66.83	0	642726..643337	+	203	119866641	-	Mkms_0587	-	peptidase S16, lon domain-containing protein
585	 63.08	-1	643391..644395	-	334	119866642	-	Mkms_0588	-	hypothetical protein
586	 65.25	-1	644392..645735	-	447	119866643	-	Mkms_0589	-	Dyp-type peroxidase family protein
587	 62.22	-1	645732..646136	-	134	119866644	-	Mkms_0590	-	hypothetical protein
588	 59.18	-2	646142..646702	-	186	119866645	-	Mkms_0591	-	hypothetical protein
589	 66.40	0	647000..647749	-	249	119866646	-	Mkms_0592	-	putative methyltransferase
590	 64.74	-1	647736..648098	-	120	119866647	-	Mkms_0593	-	putative monovalent cation/H+ antiporter subunit G
591	 67.01	0	648095..648382	-	95	119866648	-	Mkms_0594	-	putative monovalent cation/H+ antiporter subunit F
592	 66.84	0	648414..648983	-	189	119866649	-	Mkms_0595	-	putative monovalent cation/H+ antiporter subunit E
593	 68.47	0	648980..650587	-	535	119866650	-	Mkms_0596	-	putative monovalent cation/H+ antiporter subunit D
594	 67.09	0	650584..651057	-	157	119866651	-	Mkms_0597	-	putative monovalent cation/H+ antiporter subunit C
595	 69.84	0	651054..653954	-	966	119866652	-	Mkms_0598	-	putative monovalent cation/H+ antiporter subunit A
596	 66.67	0	654065..655378	-	437	119866653	-	Mkms_0599	-	citrate transporter
597	 71.02	0	655397..655855	-	152	119866654	-	Mkms_0600	-	signal transduction protein
598	 68.86	0	655903..656175	-	90	119866655	-	Mkms_0601	-	hypothetical protein
599	 69.52	0	656305..657285	+	326	119866656	-	Mkms_0602	-	integral membrane sensor signal transduction histidine kinase
600	 69.14	0	657285..657932	+	215	119866657	-	Mkms_0603	-	two component LuxR family transcriptional regulator
601	 73.72	+1	657892..658359	-	155	119866658	-	Mkms_0604	-	hypothetical protein
602	 72.55	+1	658453..660678	-	741	119866659	-	Mkms_0605	-	vesicle-fusing ATPase
603	 68.51	0	660680..661546	-	288	119866660	-	Mkms_0606	-	CDP-diacylglycerol--serine O-phosphatidyltransferase
604	 72.74	+1	661543..662250	-	235	119866661	-	Mkms_0607	-	phosphatidylserine decarboxylase
605	 72.18	+1	662286..663482	-	398	119866662	-	Mkms_0608	-	molybdopterin molybdochelatase
606	 69.16	0	663485..664405	-	306	119866663	-	Mkms_0609	-	short chain dehydrogenase
607	 72.69	+1	664460..664957	+	165	119866664	-	Mkms_0610	-	membrane-flanked domain-containing protein
608	 73.17	+1	664954..666414	+	486	119866665	-	Mkms_0611	-	membrane-flanked domain-containing protein
609	 67.52	0	666460..667275	+	271	119866666	-	Mkms_0612	-	HAD family hydrolase
610	 71.01	0	667389..668771	+	460	119866667	-	Mkms_0613	-	hypothetical protein
611	 68.50	0	668752..669840	-	362	119866668	-	Mkms_0614	-	LuxR family transcriptional regulator
612	 69.99	0	669973..671655	-	560	119866669	-	Mkms_0615	-	type III restriction enzyme, res subunit
613	 70.32	0	671845..674391	+	848	119866670	-	Mkms_0616	-	ABC transporter related
614	 68.27	0	674376..674873	-	165	119866671	-	Mkms_0617	-	cupin 2 domain-containing protein
615	 70.43	0	674885..675787	-	300	119866672	-	Mkms_0618	-	short chain dehydrogenase
616	 72.82	+1	675885..676469	+	194	119866673	-	Mkms_0619	-	TetR family transcriptional regulator
617	 66.97	0	676649..678274	+	541	119866674	groEL	Mkms_0620	-	chaperonin GroEL
618	 67.58	0	678464..679336	+	290	119866675	-	Mkms_0621	-	hypothetical protein
619	 69.98	0	679407..681128	-	573	119866676	-	Mkms_0622	-	amidohydrolase 3
620	 65.90	0	681151..681540	+	129	119866677	-	Mkms_0623	-	glyoxalase/bleomycin resistance protein/dioxygenase
621	 68.21	0	681564..682082	+	172	119866678	-	Mkms_0624	-	hypothetical protein
622	 72.41	+1	682083..682622	+	179	119866679	-	Mkms_0625	-	phosphoesterase, PA-phosphatase related
623	 68.31	0	682676..684193	+	505	119866680	-	Mkms_0626	-	aldehyde dehydrogenase
624	 70.11	0	684211..685080	+	289	119866681	-	Mkms_0627	-	hypothetical protein
625	 68.88	0	685060..685962	-	300	119866682	-	Mkms_0628	-	enoyl-CoA hydratase
626	 70.83	0	686005..687228	+	407	119866683	-	Mkms_0629	-	cytochrome P450
627	 64.09	-1	687176..688030	-	284	119866684	-	Mkms_0630	-	short-chain dehydrogenase/reductase SDR
628	 68.12	0	688020..688226	-	68	119866685	-	Mkms_0631	-	4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
629	 68.08	0	688223..689494	-	423	119866686	-	Mkms_0632	-	cytochrome P450
630	 70.96	0	689607..690188	+	193	119866687	-	Mkms_0633	-	TetR family transcriptional regulator
631	 69.38	0	690196..691671	-	491	119866688	-	Mkms_0634	-	hypothetical protein
632	 66.20	0	691767..693047	-	426	119866689	-	Mkms_0635	-	integrase catalytic subunit
633	 68.67	0	693178..695169	-	663	119866690	-	Mkms_0636	-	prolyl oligopeptidase
634	 67.77	0	695194..697095	-	633	119866691	-	Mkms_0637	-	hypothetical protein
635	 67.72	0	697104..697961	+	285	119866692	-	Mkms_0638	-	acetoin reductases
636	 71.84	+1	698005..699318	+	437	119866693	-	Mkms_0639	-	putative GAF sensor protein
637	 65.29	-1	699315..700838	+	507	119866694	-	Mkms_0640	-	aldehyde dehydrogenase
638	 72.12	+1	700839..701333	+	164	119866695	-	Mkms_0641	-	hypothetical protein
639	 69.87	0	701330..701641	+	103	119866696	-	Mkms_0642	-	hypothetical protein
640	 70.17	0	701634..702176	+	180	119866697	-	Mkms_0643	-	hypothetical protein
641	 64.60	-1	702208..703608	+	466	119866698	-	Mkms_0644	-	dihydrolipoamide dehydrogenase
642	 64.07	-1	703605..703874	+	89	119866699	-	Mkms_0645	-	hypothetical protein
68.56	MEAN

3.23	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.