IslandPathversion 1.0

IslandPath Analysis: Mycobacterium sp. KMS



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 68.56 STD DEV: 3.23
Mycobacterium sp. KMS, complete genome - 1..5737227
5460 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
472	 70.65	0	525001..526179	+	392	119866529	-	Mkms_0475	-	chaperone protein DnaJ
473	 70.77	0	526182..526571	+	129	119866530	-	Mkms_0476	-	MerR family transcriptional regulator
474	 61.50	-2	527431..528747	+	438	119866531	pimE	Mkms_0477	-	mannosyltransferase
475	 64.72	-1	528744..530030	+	428	119866532	pimE	Mkms_0478	-	mannosyltransferase
476	 67.38	0	530023..531291	+	422	119866533	pimE	Mkms_0479	-	mannosyltransferase
477	 70.10	0	531288..532190	-	300	119866534	-	Mkms_0480	-	aldose 1-epimerase
478	 70.27	0	532238..533404	-	388	119866535	-	Mkms_0481	-	oxidoreductase FAD-binding subunit
479	 73.85	+1	533421..534422	-	333	119866536	-	Mkms_0482	-	hypothetical protein
480	 69.24	0	534576..535157	+	193	119866537	-	Mkms_0483	-	TetR family transcriptional regulator
481	 67.72	0	535145..535810	-	221	119866538	-	Mkms_0484	-	hypothetical protein
482	 66.36	0	535958..536287	-	109	119866539	-	Mkms_0485	-	hypothetical protein
483	 61.83	-2	536321..537064	-	247	119866540	-	Mkms_0486	-	hypothetical protein
484	 65.16	-1	537451..537981	+	176	119866541	-	Mkms_0487	-	hypothetical protein
485	 66.54	0	537978..538757	+	259	119866542	-	Mkms_0488	-	hypothetical protein
486	 68.71	0	538888..541434	+	848	119866543	-	Mkms_0489	-	ATPase
487	 70.93	0	541639..542505	+	288	119866544	-	Mkms_0490	-	hypothetical protein
488	 70.91	0	542521..543297	+	258	119866545	-	Mkms_0491	-	short-chain dehydrogenase/reductase SDR
489	 69.68	0	543304..544200	+	298	119866546	-	Mkms_0492	-	hypothetical protein
490	 68.99	0	544193..544837	+	214	119866547	-	Mkms_0493	-	tRNA/rRNA methyltransferase (SpoU)
491	 70.85	0	544730..546307	-	525	119866548	-	Mkms_0494	-	major facilitator superfamily transporter
492	 70.59	0	546304..546864	-	186	119866549	-	Mkms_0495	-	TetR family transcriptional regulator
493	 71.65	0	546938..548101	+	387	119866550	-	Mkms_0496	-	glycoside hydrolase family protein
494	 68.62	0	548098..549939	+	613	119866551	-	Mkms_0497	-	Na+/H+ antiporter NhaA
495	 69.28	0	549945..550901	-	318	119866552	-	Mkms_0498	-	LysR family transcriptional regulator
496	 71.66	0	550937..552097	+	386	119866553	-	Mkms_0499	-	hypothetical protein
497	 70.09	0	552155..553030	+	291	119866554	-	Mkms_0500	-	carbon monoxide dehydrogenase, medium subunit
498	 67.88	0	553033..553608	+	191	119866555	-	Mkms_0501	-	2Fe-2S iron-sulfur cluster binding domain-containing protein
499	 67.75	0	553605..555995	+	796	119866556	-	Mkms_0502	-	carbon monoxide dehydrogenase, large subunit apoprotein
500	 73.41	+1	555998..556768	+	256	119866557	-	Mkms_0503	-	hypothetical protein
501	 68.65	0	556941..557645	+	234	119866558	-	Mkms_0504	-	putative oxidoreductase
502	 69.21	0	557658..558326	+	222	119866559	-	Mkms_0505	-	carbon monoxide dehydrogenase subunit G
503	 72.97	+1	558323..559591	+	422	119866560	-	Mkms_0506	-	VWA containing CoxE family protein
504	 71.23	0	559585..560439	+	284	119866561	-	Mkms_0507	-	alpha/beta hydrolase fold
505	 71.60	0	560469..561380	+	303	119866562	-	Mkms_0508	-	hypothetical protein
506	 67.38	0	561457..562866	+	469	119866563	-	Mkms_0509	-	selenium-binding protein
507	 65.79	0	562857..563543	-	228	119866564	-	Mkms_0510	-	short chain dehydrogenase
508	 74.10	+1	563630..564652	+	340	119866565	-	Mkms_0511	-	2-nitropropane dioxygenase, NPD
509	 67.39	0	564649..565344	-	231	119866566	-	Mkms_0512	-	hypothetical protein
510	 71.79	+1	565432..566445	+	337	119866567	-	Mkms_0513	-	alcohol dehydrogenase
511	 65.22	-1	566476..567513	+	345	119866568	-	Mkms_0514	-	fructose-bisphosphate aldolase
512	 71.34	0	567510..568343	-	277	119866569	-	Mkms_0515	-	hypothetical protein
513	 72.59	+1	568403..568858	+	151	119866570	-	Mkms_0516	-	hypothetical protein
514	 70.23	0	568884..569780	-	298	119866571	-	Mkms_0517	-	cation diffusion facilitator family transporter
515	 69.49	0	569837..570616	-	259	119866572	-	Mkms_0518	-	peptidase M50
516	 73.80	+1	570648..571376	-	242	119866573	-	Mkms_0519	-	GntR family transcriptional regulator
517	 70.50	0	571432..572109	+	225	119866574	-	Mkms_0520	-	peptidase C26
518	 71.39	0	572150..573355	+	401	119866575	-	Mkms_0521	-	iron-containing alcohol dehydrogenase
519	 68.00	0	573363..575009	+	548	119866576	-	Mkms_0522	-	cyclohexanone monooxygenase
520	 68.81	0	575006..576406	+	466	119866577	-	Mkms_0523	-	glutamate--ammonia ligase
521	 67.28	0	576431..577909	+	492	119866578	-	Mkms_0524	-	amino acid permease-associated region
522	 74.96	+1	577902..578528	-	208	119866579	-	Mkms_0525	-	hypothetical protein
523	 67.67	0	578600..579895	+	431	119866580	-	Mkms_0526	-	adenylosuccinate synthetase
524	 69.91	0	579892..580539	+	215	119866581	-	Mkms_0527	-	thioesterase superfamily protein
525	 67.75	0	580648..581292	+	214	119866582	-	Mkms_0528	-	hypothetical protein
526	 68.72	0	581249..581443	-	64	119866583	-	Mkms_0529	-	putative ferredoxin
527	 70.43	0	581448..582668	-	406	119866584	-	Mkms_0530	-	cytochrome P450
528	 71.51	0	582705..584729	-	674	119866585	-	Mkms_0531	-	MMPL domain-containing protein
529	 70.89	0	584788..585261	+	157	119866586	-	Mkms_0532	-	MarR family transcriptional regulator
530	 72.85	+1	585273..586874	-	533	119866587	-	Mkms_0533	-	Na+/H+ antiporter
531	 71.52	0	586940..587269	+	109	119866588	-	Mkms_0534	-	zinc finger, UBP-type protein
532	 72.96	+1	587292..588578	+	428	119866589	-	Mkms_0535	-	phosphoribosylglycinamide formyltransferase 2
533	 64.92	-1	588582..589040	+	152	119866590	-	Mkms_0536	-	hypothetical protein
534	 68.36	0	589060..589473	+	137	119866591	-	Mkms_0537	-	rhodanese domain-containing protein
535	 67.72	0	589470..590708	+	412	119866592	-	Mkms_0538	-	O-succinylhomoserine sulfhydrylase
536	 67.88	0	590709..591119	+	136	119866593	-	Mkms_0539	-	hypothetical protein
537	 67.71	0	591207..592070	-	287	119866594	-	Mkms_0540	-	short chain dehydrogenase
538	 70.51	0	592129..592623	+	164	119866595	-	Mkms_0541	-	GCN5-related N-acetyltransferase
539	 69.90	0	592644..592952	+	102	119866596	-	Mkms_0542	-	hypothetical protein
540	 71.74	0	592949..593677	-	242	119866597	-	Mkms_0543	-	beta-lactamase domain-containing protein
541	 65.97	0	593741..594751	+	336	119866598	-	Mkms_0544	-	luciferase family protein
542	 69.93	0	594755..596407	-	550	119866599	-	Mkms_0545	-	hypothetical protein
543	 70.25	0	596404..598326	-	640	119866600	-	Mkms_0546	-	hypothetical protein
544	 65.52	0	598352..599746	-	464	119866601	-	Mkms_0547	-	hypothetical protein
545	 72.45	+1	599739..601226	-	495	119866602	-	Mkms_0548	-	hypothetical protein
546	 68.23	0	601421..603535	+	704	119866603	-	Mkms_0549	-	phosphate acetyltransferase
547	 67.42	0	603532..604731	+	399	119866604	-	Mkms_0550	-	acetate kinase
548	 66.22	0	604838..605512	+	224	119866605	-	Mkms_0551	-	asparagine synthase (glutamine-hydrolyzing), putative
549	 67.85	0	605509..607788	-	759	119866606	-	Mkms_0552	-	serine/threonine protein kinase
550	 68.17	0	607788..608783	-	331	119866607	-	Mkms_0553	-	extracellular solute-binding protein
551	 69.77	0	608783..610102	-	439	119866608	-	Mkms_0554	-	hypothetical protein
552	 72.76	+1	610211..610735	+	174	119866609	-	Mkms_0555	-	NUDIX hydrolase
553	 73.27	+1	610725..611405	-	226	119866610	thiE	Mkms_0556	-	thiamine-phosphate pyrophosphorylase
554	 72.66	+1	611545..612561	+	338	119866611	-	Mkms_0557	-	glycine oxidase ThiO
555	 68.18	0	612572..612769	+	65	119866612	-	Mkms_0558	-	sulfur carrier protein ThiS
556	 70.73	0	612762..613523	+	253	119866613	thiG	Mkms_0559	-	thiazole synthase
557	 74.80	+1	613532..614281	+	249	119866614	-	Mkms_0560	-	hypothetical protein
558	 68.88	0	614274..615176	+	300	119866615	-	Mkms_0561	-	ABC transporter related
559	 68.83	0	615176..615916	+	246	119866616	-	Mkms_0562	-	putative ABC transporter membrane protein
560	 64.84	-1	616691..618442	-	583	119866617	-	Mkms_0563	-	hypothetical protein
561	 65.87	0	618488..619486	+	332	119866618	-	Mkms_0564	-	HTTM domain-containing protein
562	 67.13	0	619523..621028	+	501	119866619	-	Mkms_0565	-	aminopeptidase Y
563	 69.24	0	621028..622467	+	479	119866620	-	Mkms_0566	-	aminopeptidase Y
564	 67.89	0	622957..624261	+	434	119866621	-	Mkms_0567	-	hypothetical protein
565	 69.05	0	624279..625580	-	433	119866622	-	Mkms_0568	-	uracil-xanthine permease
566	 74.52	+1	625587..626834	-	415	119866623	-	Mkms_0569	-	amino acid permease-associated region
567	 68.44	0	626844..627182	-	112	119866624	-	Mkms_0570	-	hypothetical protein
568	 68.38	0	627278..628564	+	428	119866625	-	Mkms_0571	-	TetR family transcriptional regulator
569	 67.42	0	628531..628797	-	88	119866626	-	Mkms_0572	-	hypothetical protein
570	 64.52	-1	628811..630301	-	496	119866627	-	Mkms_0573	-	FAD-dependent pyridine nucleotide-disulphide oxidoreductase
571	 70.39	0	630357..630974	-	205	119866628	-	Mkms_0574	-	hypothetical protein
68.56	MEAN

3.23	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.