IslandPath Analysis: Mycobacterium sp. KMS



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 68.56   STD DEV: 3.23
Mycobacterium sp. KMS, complete genome - 1..5737227
5460 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
410	 69.63	0	455951..456826	+	291	119866467	-	Mkms_0412	-	alpha/beta hydrolase fold
411	 70.05	0	456916..457773	+	285	119866468	-	Mkms_0413	-	endoglucanase family protein
412	 69.89	0	457770..459011	+	413	119866469	-	Mkms_0414	-	putative GAF sensor protein
413	 66.67	0	459008..460984	+	658	119866470	-	Mkms_0415	-	cellulose synthase (UDP-forming)
414	 65.20	-1	460984..461325	+	113	119866471	-	Mkms_0416	-	anti-sigma-factor antagonist
415	 68.60	0	461312..461725	+	137	119866472	-	Mkms_0417	-	putative anti-sigma regulatory factor, serine/threonine protein kinase
416	 65.46	0	461763..462341	+	192	119866473	-	Mkms_0418	-	TetR family transcriptional regulator
417	 65.46	0	462393..462641	-	82	119866474	-	Mkms_0419	-	hypothetical protein
418	 65.86	0	462981..465086	+	701	119866475	-	Mkms_0420	-	hypothetical protein
419	 73.17	+1	465118..465594	+	158	119866476	-	Mkms_0421	-	hypothetical protein
420	 74.92	+1	465689..466972	+	427	119866477	-	Mkms_0422	-	hypothetical protein
421	 70.46	0	467343..467948	+	201	119866478	-	Mkms_0423	-	hypothetical protein
422	 60.58	-2	468089..468943	+	284	119866479	-	Mkms_0424	-	hypothetical protein
423	 67.14	0	469026..469877	+	283	119866480	-	Mkms_0425	-	glycoside hydrolase family protein
424	 69.11	0	470192..470314	-	40	119866481	-	Mkms_0426	-	hypothetical protein
425	 65.96	0	470381..470806	-	141	119866482	-	Mkms_0427	-	hypothetical protein
426	 65.69	0	470885..471910	-	341	119866483	-	Mkms_0428	-	hypothetical protein
427	 62.10	-2	471947..472384	-	145	119866484	-	Mkms_0429	-	hypothetical protein
428	 66.43	0	473086..474333	-	415	119866485	-	Mkms_0431	-	transposase, mutator type
429	 70.45	0	474632..476032	+	466	119866486	-	Mkms_0432	-	NAD-dependent epimerase/dehydratase
430	 67.81	0	476042..476917	+	291	119866487	-	Mkms_0433	-	short-chain dehydrogenase/reductase SDR
431	 66.22	0	476929..478272	-	447	119866488	-	Mkms_0434	-	triacylglycerol lipase
432	 65.87	0	478389..479642	-	417	119866489	-	Mkms_0435	-	hypothetical protein
433	 69.61	0	479962..481254	-	430	119866490	-	Mkms_0436	-	hypothetical protein
434	 70.40	0	481399..483033	+	544	119866491	-	Mkms_0437	-	LuxR family transcriptional regulator
435	 66.67	0	483270..484106	+	278	119866492	-	Mkms_0438	-	methyltransferase type 11
436	 68.49	0	484153..484809	+	218	119866493	-	Mkms_0439	-	hypothetical protein
437	 65.97	0	484953..485525	+	190	119866494	dcd	Mkms_0440	-	deoxycytidine triphosphate deaminase
438	 72.85	+1	485801..487612	+	603	119866495	-	Mkms_0441	-	hypothetical protein
439	 65.55	0	487605..487961	+	118	119866496	-	Mkms_0442	-	hypothetical protein
440	 70.09	0	487961..489304	+	447	119866497	-	Mkms_0443	-	cytochrome P450
441	 71.73	0	489306..490055	+	249	119866498	-	Mkms_0444	-	hypothetical protein
442	 66.12	0	490076..490444	+	122	119866499	-	Mkms_0445	-	hypothetical protein
443	 66.32	0	490444..491307	+	287	119866500	-	Mkms_0446	-	glucose-1-phosphate thymidylyltransferase
444	 69.63	0	491308..493398	-	696	119866501	-	Mkms_0447	-	xanthine dehydrogenase, molybdenum binding subunit apoprotein
445	 69.99	0	493395..494387	-	330	119866502	-	Mkms_0448	-	molybdopterin dehydrogenase, FAD-binding
446	 67.24	0	494398..494919	-	173	119866503	-	Mkms_0449	-	2Fe-2S iron-sulfur cluster binding domain-containing protein
447	 71.22	0	494916..496190	-	424	119866504	-	Mkms_0450	-	YibE/F family protein
448	 66.43	0	496194..497480	-	428	119866505	-	Mkms_0451	-	aminotransferase AlaT
449	 68.23	0	497563..500703	-	1046	119866506	-	Mkms_0452	-	hypothetical protein
450	 74.19	+1	500840..503377	-	845	119866507	-	Mkms_0453	-	LuxR family transcriptional regulator
451	 74.20	+1	503387..505192	-	601	119866508	-	Mkms_0454	-	hypothetical protein
452	 70.10	0	505440..505964	+	174	119866509	-	Mkms_0455	-	hypothetical protein
453	 68.55	0	506080..507300	+	406	119866510	-	Mkms_0456	-	hypothetical protein
454	 68.71	0	507396..509255	+	619	119866511	-	Mkms_0457	-	hypothetical protein
455	 70.91	0	509342..510850	+	502	119866512	-	Mkms_0458	-	isoniazid inductible gene protein IniC
456	 75.00	+1	510881..512716	+	611	119866513	-	Mkms_0459	-	hypothetical protein
457	 68.98	0	512825..513343	-	172	119866514	-	Mkms_0460	-	hypothetical protein
458	 69.25	0	513370..513834	-	154	119866515	-	Mkms_0461	-	hypothetical protein
459	 70.18	0	513875..514813	-	312	119866516	-	Mkms_0462	-	luciferase family protein
460	 71.68	0	514815..515432	-	205	119866517	-	Mkms_0463	-	hypothetical protein
461	 67.11	0	515707..516615	+	302	119866518	-	Mkms_0464	-	hypothetical protein
462	 61.46	-2	516666..516857	+	63	119866519	-	Mkms_0465	-	ferredoxin (3Fe-4S)
463	 71.16	0	516861..518063	+	400	119866520	-	Mkms_0466	-	FAD-dependent pyridine nucleotide-disulphide oxidoreductase
464	 68.68	0	518073..518420	-	115	119866521	-	Mkms_0467	-	hypothetical protein
465	 68.80	0	518518..518985	+	155	119866522	-	Mkms_0468	-	hypothetical protein
466	 71.91	+1	518979..519455	+	158	119866523	-	Mkms_0469	-	hypothetical protein
467	 68.29	0	519463..520878	-	471	119866524	-	Mkms_0470	-	glucose-6-phosphate 1-dehydrogenase
468	 71.48	0	520931..521491	-	186	119866525	-	Mkms_0471	-	putative lipoprotein LpqJ
469	 66.26	0	521501..522244	-	247	119866526	-	Mkms_0472	-	hypothetical protein
470	 66.13	0	522460..524328	+	622	119866527	-	Mkms_0473	-	molecular chaperone DnaK
471	 72.38	+1	524325..524972	+	215	119866528	-	Mkms_0474	-	GrpE protein
472	 70.65	0	525001..526179	+	392	119866529	-	Mkms_0475	-	chaperone protein DnaJ
473	 70.77	0	526182..526571	+	129	119866530	-	Mkms_0476	-	MerR family transcriptional regulator
474	 61.50	-2	527431..528747	+	438	119866531	pimE	Mkms_0477	-	mannosyltransferase
475	 64.72	-1	528744..530030	+	428	119866532	pimE	Mkms_0478	-	mannosyltransferase
476	 67.38	0	530023..531291	+	422	119866533	pimE	Mkms_0479	-	mannosyltransferase
477	 70.10	0	531288..532190	-	300	119866534	-	Mkms_0480	-	aldose 1-epimerase
478	 70.27	0	532238..533404	-	388	119866535	-	Mkms_0481	-	oxidoreductase FAD-binding subunit
479	 73.85	+1	533421..534422	-	333	119866536	-	Mkms_0482	-	hypothetical protein
480	 69.24	0	534576..535157	+	193	119866537	-	Mkms_0483	-	TetR family transcriptional regulator
481	 67.72	0	535145..535810	-	221	119866538	-	Mkms_0484	-	hypothetical protein
482	 66.36	0	535958..536287	-	109	119866539	-	Mkms_0485	-	hypothetical protein
483	 61.83	-2	536321..537064	-	247	119866540	-	Mkms_0486	-	hypothetical protein
484	 65.16	-1	537451..537981	+	176	119866541	-	Mkms_0487	-	hypothetical protein
485	 66.54	0	537978..538757	+	259	119866542	-	Mkms_0488	-	hypothetical protein
486	 68.71	0	538888..541434	+	848	119866543	-	Mkms_0489	-	ATPase
487	 70.93	0	541639..542505	+	288	119866544	-	Mkms_0490	-	hypothetical protein
488	 70.91	0	542521..543297	+	258	119866545	-	Mkms_0491	-	short-chain dehydrogenase/reductase SDR
489	 69.68	0	543304..544200	+	298	119866546	-	Mkms_0492	-	hypothetical protein
490	 68.99	0	544193..544837	+	214	119866547	-	Mkms_0493	-	tRNA/rRNA methyltransferase (SpoU)
491	 70.85	0	544730..546307	-	525	119866548	-	Mkms_0494	-	major facilitator superfamily transporter
492	 70.59	0	546304..546864	-	186	119866549	-	Mkms_0495	-	TetR family transcriptional regulator
493	 71.65	0	546938..548101	+	387	119866550	-	Mkms_0496	-	glycoside hydrolase family protein
494	 68.62	0	548098..549939	+	613	119866551	-	Mkms_0497	-	Na+/H+ antiporter NhaA
495	 69.28	0	549945..550901	-	318	119866552	-	Mkms_0498	-	LysR family transcriptional regulator
496	 71.66	0	550937..552097	+	386	119866553	-	Mkms_0499	-	hypothetical protein
497	 70.09	0	552155..553030	+	291	119866554	-	Mkms_0500	-	carbon monoxide dehydrogenase, medium subunit
498	 67.88	0	553033..553608	+	191	119866555	-	Mkms_0501	-	2Fe-2S iron-sulfur cluster binding domain-containing protein
499	 67.75	0	553605..555995	+	796	119866556	-	Mkms_0502	-	carbon monoxide dehydrogenase, large subunit apoprotein
500	 73.41	+1	555998..556768	+	256	119866557	-	Mkms_0503	-	hypothetical protein
501	 68.65	0	556941..557645	+	234	119866558	-	Mkms_0504	-	putative oxidoreductase
502	 69.21	0	557658..558326	+	222	119866559	-	Mkms_0505	-	carbon monoxide dehydrogenase subunit G
503	 72.97	+1	558323..559591	+	422	119866560	-	Mkms_0506	-	VWA containing CoxE family protein
504	 71.23	0	559585..560439	+	284	119866561	-	Mkms_0507	-	alpha/beta hydrolase fold
505	 71.60	0	560469..561380	+	303	119866562	-	Mkms_0508	-	hypothetical protein
506	 67.38	0	561457..562866	+	469	119866563	-	Mkms_0509	-	selenium-binding protein
507	 65.79	0	562857..563543	-	228	119866564	-	Mkms_0510	-	short chain dehydrogenase
508	 74.10	+1	563630..564652	+	340	119866565	-	Mkms_0511	-	2-nitropropane dioxygenase, NPD
509	 67.39	0	564649..565344	-	231	119866566	-	Mkms_0512	-	hypothetical protein
68.56	MEAN

3.23	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.